PVX_084698 | ATP-dependent Clp protease proteolytic subunit, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_084698SP0.0076050.9907270.001668CS pos: 23-24. GEA-TA. Pr: 0.5998
No Results

  • Fasta :-

    >PVX_084698 MPSYLLLLAAIALSPLCAHKGEATAKYSYITRRSNVPVGRIKNLKKAKTKLRLSPGEHNQ HGISIPSMLLSKRIIFLSSPVYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKI INLNGMTDVISIIDVIDYISSDVYTYCLGKAYGISCILASSGKKGFRFSLKNSSFCLNQS YSVIPFNQATNIEIQNKEIMNTKRKVVEIIANNTGKEKSHIERILERDRYFSAPEAVQFN LVDHILERE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_084698.fa Sequence name : PVX_084698 Sequence length : 249 VALUES OF COMPUTED PARAMETERS Coef20 : 4.212 CoefTot : -1.924 ChDiff : 10 ZoneTo : 86 KR : 13 DE : 2 CleavSite : 83 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.776 1.824 0.356 0.643 MesoH : -0.349 0.381 -0.245 0.227 MuHd_075 : 23.663 16.859 7.097 6.297 MuHd_095 : 27.842 18.877 7.657 5.924 MuHd_100 : 32.898 19.228 8.127 6.733 MuHd_105 : 36.430 21.171 10.389 7.646 Hmax_075 : 15.700 14.350 5.192 6.340 Hmax_095 : 4.025 16.887 -3.234 2.494 Hmax_100 : 11.100 10.700 -0.280 5.200 Hmax_105 : 13.200 13.900 2.633 4.890 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6032 0.3968 DFMC : 0.4315 0.5685 This protein is probably imported in mitochondria. f(Ser) = 0.1279 f(Arg) = 0.0581 CMi = 0.84485 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 249 PVX_084698 MPSYLLLLAAIALSPLCAHKGEATAKYSYITRRSNVPVGRIKNLKKAKTKLRLSPGEHNQHGISIPSMLLSKRIIFLSSP 80 VYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIINLNGMTDVISIIDVIDYISSDVYTYCLGKAYGISCILAS 160 SGKKGFRFSLKNSSFCLNQSYSVIPFNQATNIEIQNKEIMNTKRKVVEIIANNTGKEKSHIERILERDRYFSAPEAVQFN 240 LVDHILERE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ......... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_084698 20 SPLCAHK|GE 0.066 . PVX_084698 26 KGEATAK|YS 0.075 . PVX_084698 32 KYSYITR|RS 0.078 . PVX_084698 33 YSYITRR|SN 0.301 . PVX_084698 40 SNVPVGR|IK 0.083 . PVX_084698 42 VPVGRIK|NL 0.064 . PVX_084698 45 GRIKNLK|KA 0.082 . PVX_084698 46 RIKNLKK|AK 0.110 . PVX_084698 48 KNLKKAK|TK 0.064 . PVX_084698 50 LKKAKTK|LR 0.061 . PVX_084698 52 KAKTKLR|LS 0.094 . PVX_084698 72 PSMLLSK|RI 0.054 . PVX_084698 73 SMLLSKR|II 0.144 . PVX_084698 101 YLEYESK|RK 0.057 . PVX_084698 102 LEYESKR|KP 0.119 . PVX_084698 103 EYESKRK|PI 0.085 . PVX_084698 119 GDLENNK|II 0.060 . PVX_084698 150 YTYCLGK|AY 0.062 . PVX_084698 163 ILASSGK|KG 0.057 . PVX_084698 164 LASSGKK|GF 0.112 . PVX_084698 167 SGKKGFR|FS 0.085 . PVX_084698 171 GFRFSLK|NS 0.086 . PVX_084698 197 NIEIQNK|EI 0.063 . PVX_084698 203 KEIMNTK|RK 0.057 . PVX_084698 204 EIMNTKR|KV 0.271 . PVX_084698 205 IMNTKRK|VV 0.150 . PVX_084698 216 IANNTGK|EK 0.097 . PVX_084698 218 NNTGKEK|SH 0.070 . PVX_084698 223 EKSHIER|IL 0.112 . PVX_084698 227 IERILER|DR 0.093 . PVX_084698 229 RILERDR|YF 0.093 . PVX_084698 248 VDHILER|E- 0.091 . ____________________________^_________________

  • Fasta :-

    >PVX_084698 ATGCCAAGTTACCTACTGCTGCTTGCCGCGATTGCCCTCTCCCCCCTATGTGCACATAAA GGGGAGGCAACCGCCAAGTACAGCTACATAACCCGCAGAAGCAACGTACCAGTGGGCAGA ATAAAAAATCTGAAAAAGGCAAAAACGAAGTTACGCCTATCCCCCGGTGAACACAACCAA CACGGGATCAGCATCCCGTCAATGTTACTCTCCAAGAGAATCATATTTCTCTCATCTCCA GTGTACCCCCACATATCCGAGCAGATAATCTCTCAGCTCCTCTACCTGGAATATGAGTCC AAGAGAAAGCCAATCCATTTATACATTAACAGTACAGGCGATTTGGAAAATAATAAAATT ATAAACCTTAACGGAATGACAGATGTGATATCCATCATCGATGTGATAGATTACATTTCG TCTGATGTGTACACGTACTGTTTGGGGAAGGCGTATGGCATTTCTTGCATTTTGGCTAGC AGTGGGAAAAAGGGGTTTCGTTTTTCCCTTAAAAACTCGTCGTTTTGCCTGAACCAGTCA TACTCGGTTATCCCCTTCAACCAAGCCACGAACATTGAAATACAGAACAAGGAAATTATG AACACCAAGAGGAAGGTCGTCGAGATTATTGCCAACAACACGGGGAAGGAGAAGAGCCAC ATCGAGCGTATTCTAGAGAGGGACCGCTACTTCAGTGCCCCCGAGGCTGTGCAGTTCAAC TTGGTGGACCACATCCTCGAGAGGGAGTAG
  • Download Fasta

  • Fasta :-

    MPSYLLLLAAIALSPLCAHKGEATAKYSYITRRSNVPVGRIKNLKKAKTKLRLSPGEHNQ HGISIPSMLLSKRIIFLSSPVYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKI INLNGMTDVISIIDVIDYISSDVYTYCLGKAYGISCILASSGKKGFRFSLKNSSFCLNQS YSVIPFNQATNIEIQNKEIMNTKRKVVEIIANNTGKEKSHIERILERDRYFSAPEAVQFN LVDHILERE

  • title: active site residues
  • coordinates: G153,N178,D228
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_084698232 SDRYFSAPEA0.996unspPVX_084698232 SDRYFSAPEA0.996unspPVX_084698232 SDRYFSAPEA0.996unspPVX_08469854 SKLRLSPGEH0.998unspPVX_084698169 SGFRFSLKNS0.996unsp
PVX_084698      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India