PVX_084702 | ATP-dependent Clp protease proteolytic subunit, putative

  • Computed_GO_Component_IDs:  GO:0020011      

  • Computed_GO_Components:  apicoplast      

  • Computed_GO_Function_IDs:  GO:0008462      

  • Computed_GO_Functions:  obsolete endopeptidase Clp activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PVX_084702mTP0.0141610.0000010.985838CS pos: 34-35. RKL-SS. Pr: 0.4543
No Results

  • Fasta :-

    >PVX_084702 MLAKRLLLNARGLPNLARHNSIRRRGTIAWARKLSSSHERATNFGKKKAKNGSKEIGKGD TKSIDHPADEKPSNFQEHNGGSKGILTQMGSKNGNKQMAGELPNLVLAILKEKSSQQSEK KKTLIDQYKQIVSARLEGGSQNGEGKKDAPNFADIFSTLYLCYAEKIFDLDFVTKVSAAL EGLLGGQSGGHGGRGEGGRDALNEATINHCMMMFHYLSALNVKNVTLCNQVRDYIVSHEV PPLVIYHYLECLSLLADSSDRSGKSNLRDYVIPVVDVFLESFYIFNNYLLLRILHFLHKL GFMDTELFLLLTRKINKNVYRENANRFELCLLARTYALYKKENITFSNYLCEDLLRSLTK YEDNFQGDQDGPVSQPDSQPGSIQVSHPDSHPDSHPDSHPDSHPDSHPDNQPDSHPDNQP DSHPDNQPDSQPENAPYVLEIENVNRQNYPLFGHPLYNDGLNFYAFFVDAKTTNREKCFE RKNNLHVTFINGDVSEKERQGTPPRMSEWHKLFLYDEYKEKDIKNEPFVKLEDTQKKGRQ MVQSYNQFLAENLHFQFSHKKIAQLFEQVSELMDKVKVDFSTDAEAHTEMDDQAVHQYKK KILYVENYYIGHIFHIVDSLLSLKAHHNCATFKKMESKILNAIKNNELYIIDNFDSDEIK SLLIFLSHTNRNYKEAFIYGLTHRMVDLYINNLCRPNTLSTFFYFLLNFTKQRVVRKNRF NHTIRNVIYNSYSWLNDNKSVLNLTAAIDAANSEEKQNSDARRVIKAKNYSLLQVLSMHV CKNVYFMSLSTLASLLRSLSYLFFTDANFFNVFIPLFMKHMADLSNVDILNITQAYNKQK IQNKYFYYLLAKQYQSNRSEETKNADPKIRLVG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_084702.fa Sequence name : PVX_084702 Sequence length : 873 VALUES OF COMPUTED PARAMETERS Coef20 : 4.318 CoefTot : 0.056 ChDiff : 6 ZoneTo : 54 KR : 15 DE : 1 CleavSite : 42 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.218 1.412 0.069 0.634 MesoH : 0.028 0.691 -0.294 0.303 MuHd_075 : 40.138 28.043 11.662 8.395 MuHd_095 : 44.446 20.742 12.999 9.509 MuHd_100 : 47.259 24.996 11.968 10.186 MuHd_105 : 45.410 26.519 11.517 10.473 Hmax_075 : -0.350 12.163 2.946 3.168 Hmax_095 : 7.100 5.100 -1.449 3.180 Hmax_100 : 8.600 15.300 -1.537 3.630 Hmax_105 : 15.400 19.600 -0.519 6.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0139 0.9861 DFMC : 0.0053 0.9947 This protein is probably imported in mitochondria. f(Ser) = 0.0926 f(Arg) = 0.1481 CMi = 0.33378 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 873 PVX_084702 MLAKRLLLNARGLPNLARHNSIRRRGTIAWARKLSSSHERATNFGKKKAKNGSKEIGKGDTKSIDHPADEKPSNFQEHNG 80 GSKGILTQMGSKNGNKQMAGELPNLVLAILKEKSSQQSEKKKTLIDQYKQIVSARLEGGSQNGEGKKDAPNFADIFSTLY 160 LCYAEKIFDLDFVTKVSAALEGLLGGQSGGHGGRGEGGRDALNEATINHCMMMFHYLSALNVKNVTLCNQVRDYIVSHEV 240 PPLVIYHYLECLSLLADSSDRSGKSNLRDYVIPVVDVFLESFYIFNNYLLLRILHFLHKLGFMDTELFLLLTRKINKNVY 320 RENANRFELCLLARTYALYKKENITFSNYLCEDLLRSLTKYEDNFQGDQDGPVSQPDSQPGSIQVSHPDSHPDSHPDSHP 400 DSHPDSHPDNQPDSHPDNQPDSHPDNQPDSQPENAPYVLEIENVNRQNYPLFGHPLYNDGLNFYAFFVDAKTTNREKCFE 480 RKNNLHVTFINGDVSEKERQGTPPRMSEWHKLFLYDEYKEKDIKNEPFVKLEDTQKKGRQMVQSYNQFLAENLHFQFSHK 560 KIAQLFEQVSELMDKVKVDFSTDAEAHTEMDDQAVHQYKKKILYVENYYIGHIFHIVDSLLSLKAHHNCATFKKMESKIL 640 NAIKNNELYIIDNFDSDEIKSLLIFLSHTNRNYKEAFIYGLTHRMVDLYINNLCRPNTLSTFFYFLLNFTKQRVVRKNRF 720 NHTIRNVIYNSYSWLNDNKSVLNLTAAIDAANSEEKQNSDARRVIKAKNYSLLQVLSMHVCKNVYFMSLSTLASLLRSLS 800 YLFFTDANFFNVFIPLFMKHMADLSNVDILNITQAYNKQKIQNKYFYYLLAKQYQSNRSEETKNADPKIRLVG 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ......................................................................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_084702 4 ---MLAK|RL 0.057 . PVX_084702 5 --MLAKR|LL 0.138 . PVX_084702 11 RLLLNAR|GL 0.084 . PVX_084702 18 GLPNLAR|HN 0.114 . PVX_084702 23 ARHNSIR|RR 0.133 . PVX_084702 24 RHNSIRR|RG 0.103 . PVX_084702 25 HNSIRRR|GT 0.256 . PVX_084702 32 GTIAWAR|KL 0.097 . PVX_084702 33 TIAWARK|LS 0.106 . PVX_084702 40 LSSSHER|AT 0.135 . PVX_084702 46 RATNFGK|KK 0.064 . PVX_084702 47 ATNFGKK|KA 0.116 . PVX_084702 48 TNFGKKK|AK 0.127 . PVX_084702 50 FGKKKAK|NG 0.082 . PVX_084702 54 KAKNGSK|EI 0.081 . PVX_084702 58 GSKEIGK|GD 0.076 . PVX_084702 62 IGKGDTK|SI 0.075 . PVX_084702 71 DHPADEK|PS 0.060 . PVX_084702 83 EHNGGSK|GI 0.070 . PVX_084702 92 LTQMGSK|NG 0.060 . PVX_084702 96 GSKNGNK|QM 0.070 . PVX_084702 111 LVLAILK|EK 0.058 . PVX_084702 113 LAILKEK|SS 0.089 . PVX_084702 120 SSQQSEK|KK 0.069 . PVX_084702 121 SQQSEKK|KT 0.092 . PVX_084702 122 QQSEKKK|TL 0.196 . PVX_084702 129 TLIDQYK|QI 0.074 . PVX_084702 135 KQIVSAR|LE 0.149 . PVX_084702 146 SQNGEGK|KD 0.070 . PVX_084702 147 QNGEGKK|DA 0.120 . PVX_084702 166 YLCYAEK|IF 0.060 . PVX_084702 175 DLDFVTK|VS 0.062 . PVX_084702 194 SGGHGGR|GE 0.093 . PVX_084702 199 GRGEGGR|DA 0.143 . PVX_084702 223 LSALNVK|NV 0.070 . PVX_084702 232 TLCNQVR|DY 0.120 . PVX_084702 261 LADSSDR|SG 0.098 . PVX_084702 264 SSDRSGK|SN 0.187 . PVX_084702 268 SGKSNLR|DY 0.081 . PVX_084702 292 NNYLLLR|IL 0.076 . PVX_084702 299 ILHFLHK|LG 0.060 . PVX_084702 313 LFLLLTR|KI 0.069 . PVX_084702 314 FLLLTRK|IN 0.069 . PVX_084702 317 LTRKINK|NV 0.075 . PVX_084702 321 INKNVYR|EN 0.094 . PVX_084702 326 YRENANR|FE 0.084 . PVX_084702 334 ELCLLAR|TY 0.073 . PVX_084702 340 RTYALYK|KE 0.057 . PVX_084702 341 TYALYKK|EN 0.086 . PVX_084702 356 LCEDLLR|SL 0.145 . PVX_084702 360 LLRSLTK|YE 0.080 . PVX_084702 446 EIENVNR|QN 0.096 . PVX_084702 471 AFFVDAK|TT 0.063 . PVX_084702 475 DAKTTNR|EK 0.077 . PVX_084702 477 KTTNREK|CF 0.061 . PVX_084702 481 REKCFER|KN 0.082 . PVX_084702 482 EKCFERK|NN 0.081 . PVX_084702 497 NGDVSEK|ER 0.056 . PVX_084702 499 DVSEKER|QG 0.098 . PVX_084702 505 RQGTPPR|MS 0.102 . PVX_084702 511 RMSEWHK|LF 0.066 . PVX_084702 519 FLYDEYK|EK 0.063 . PVX_084702 521 YDEYKEK|DI 0.075 . PVX_084702 524 YKEKDIK|NE 0.053 . PVX_084702 530 KNEPFVK|LE 0.064 . PVX_084702 536 KLEDTQK|KG 0.062 . PVX_084702 537 LEDTQKK|GR 0.100 . PVX_084702 539 DTQKKGR|QM 0.113 . PVX_084702 560 HFQFSHK|KI 0.079 . PVX_084702 561 FQFSHKK|IA 0.100 . PVX_084702 575 VSELMDK|VK 0.055 . PVX_084702 577 ELMDKVK|VD 0.062 . PVX_084702 599 QAVHQYK|KK 0.065 . PVX_084702 600 AVHQYKK|KI 0.106 . PVX_084702 601 VHQYKKK|IL 0.113 . PVX_084702 624 DSLLSLK|AH 0.056 . PVX_084702 633 HNCATFK|KM 0.071 . PVX_084702 634 NCATFKK|ME 0.174 . PVX_084702 638 FKKMESK|IL 0.077 . PVX_084702 644 KILNAIK|NN 0.064 . PVX_084702 660 FDSDEIK|SL 0.087 . PVX_084702 671 FLSHTNR|NY 0.095 . PVX_084702 674 HTNRNYK|EA 0.200 . PVX_084702 684 IYGLTHR|MV 0.129 . PVX_084702 695 YINNLCR|PN 0.083 . PVX_084702 711 FLLNFTK|QR 0.055 . PVX_084702 713 LNFTKQR|VV 0.145 . PVX_084702 716 TKQRVVR|KN 0.279 . PVX_084702 717 KQRVVRK|NR 0.083 . PVX_084702 719 RVVRKNR|FN 0.454 . PVX_084702 725 RFNHTIR|NV 0.113 . PVX_084702 739 SWLNDNK|SV 0.087 . PVX_084702 756 AANSEEK|QN 0.087 . PVX_084702 762 KQNSDAR|RV 0.143 . PVX_084702 763 QNSDARR|VI 0.250 . PVX_084702 766 DARRVIK|AK 0.167 . PVX_084702 768 RRVIKAK|NY 0.079 . PVX_084702 782 LSMHVCK|NV 0.078 . PVX_084702 797 TLASLLR|SL 0.158 . PVX_084702 819 FIPLFMK|HM 0.056 . PVX_084702 838 ITQAYNK|QK 0.060 . PVX_084702 840 QAYNKQK|IQ 0.074 . PVX_084702 844 KQKIQNK|YF 0.069 . PVX_084702 852 FYYLLAK|QY 0.060 . PVX_084702 858 KQYQSNR|SE 0.140 . PVX_084702 863 NRSEETK|NA 0.110 . PVX_084702 868 TKNADPK|IR 0.072 . PVX_084702 870 NADPKIR|LV 0.167 . ____________________________^_________________

  • Fasta :-

    >PVX_084702 ATGCTCGCAAAAAGGCTGCTTCTAAACGCGCGCGGATTGCCGAACCTTGCCAGGCACAAC TCGATCAGGAGAAGAGGGACAATCGCCTGGGCCAGGAAACTCTCCTCCTCGCACGAACGG GCCACCAATTTTGGCAAAAAGAAGGCGAAAAATGGGAGTAAAGAAATCGGGAAGGGAGAC ACCAAGTCGATTGACCACCCCGCAGACGAAAAACCGTCTAACTTTCAAGAGCACAATGGA GGGTCAAAAGGAATACTCACCCAGATGGGTAGCAAAAATGGGAACAAACAAATGGCAGGG GAGCTGCCCAATTTAGTGCTGGCAATTTTGAAGGAAAAATCATCCCAACAGTCAGAAAAA AAAAAAACGCTAATAGATCAGTACAAACAAATTGTGTCTGCACGATTGGAGGGGGGATCC CAGAATGGTGAAGGCAAAAAAGACGCCCCCAATTTTGCGGACATTTTTTCCACCCTCTAT TTGTGTTACGCGGAAAAGATATTCGACTTGGACTTCGTGACCAAAGTGAGTGCCGCGCTG GAGGGGCTGCTCGGCGGGCAAAGCGGTGGACACGGTGGACGCGGTGAAGGGGGGAGAGAC GCGCTGAACGAGGCCACAATCAACCACTGCATGATGATGTTCCACTACCTATCCGCGTTA AATGTCAAAAATGTAACCTTGTGCAACCAGGTGAGAGACTACATCGTAAGCCACGAGGTA CCCCCCCTGGTCATCTACCATTACTTGGAGTGTCTCAGTCTGCTAGCCGACTCGTCCGAC AGAAGCGGCAAGAGCAATCTGCGCGATTACGTCATTCCCGTCGTAGATGTCTTTCTGGAA AGCTTTTACATCTTCAACAACTACCTCCTGCTGCGCATTCTGCACTTCCTACACAAACTG GGCTTCATGGACACAGAACTGTTTCTCCTGCTGACGAGGAAGATAAATAAAAATGTCTAT CGGGAGAATGCAAACCGGTTTGAGTTGTGCTTGCTGGCGCGTACGTACGCCCTGTACAAG AAGGAAAACATCACCTTCAGTAACTACCTGTGCGAAGATTTGCTGCGCAGCTTGACCAAG TACGAGGACAACTTTCAGGGCGACCAGGATGGCCCGGTTAGCCAACCGGATAGCCAACCA GGTAGCATCCAAGTTAGCCACCCAGATAGCCACCCAGATAGCCACCCAGATAGCCACCCA GATAGCCACCCAGATAGCCACCCGGATAACCAACCAGATAGCCACCCGGATAACCAACCA GATAGCCACCCGGATAACCAACCAGATAGCCAACCCGAGAACGCCCCCTACGTGCTCGAA ATCGAAAACGTCAACCGGCAGAACTACCCCCTCTTTGGGCACCCCCTGTACAACGACGGG CTGAACTTCTACGCCTTCTTCGTCGACGCGAAGACAACCAACAGGGAAAAGTGCTTCGAA CGGAAAAACAATTTGCACGTTACTTTCATAAACGGCGATGTTAGCGAGAAAGAGCGACAG GGGACCCCTCCACGCATGTCCGAGTGGCACAAGCTATTCCTTTACGATGAGTACAAAGAG AAGGATATAAAAAACGAACCATTCGTTAAATTGGAGGACACACAAAAAAAGGGTCGACAA ATGGTTCAATCGTACAATCAATTTTTAGCGGAAAATCTGCACTTCCAATTTAGCCATAAG AAAATTGCACAGCTGTTTGAACAGGTGAGCGAACTTATGGATAAGGTCAAAGTGGACTTC TCAACCGATGCGGAGGCACACACAGAAATGGATGACCAAGCTGTTCACCAGTACAAGAAA AAAATTCTTTATGTTGAAAATTATTACATTGGTCATATATTTCACATAGTAGACTCTTTG CTATCTTTGAAGGCACACCACAATTGTGCTACATTCAAAAAAATGGAAAGTAAAATTCTG AACGCTATAAAAAATAATGAGCTGTACATAATTGACAATTTTGACAGCGACGAAATTAAA AGCCTCTTAATTTTTTTATCTCACACGAATAGGAATTACAAAGAGGCATTTATTTACGGC CTGACGCATCGAATGGTGGATCTGTACATTAATAACTTGTGTCGGCCCAACACACTGTCC ACATTTTTTTATTTCCTGTTGAATTTTACAAAACAAAGAGTTGTTAGGAAGAACAGATTT AACCACACCATAAGGAATGTCATATATAATAGCTATTCCTGGTTGAATGACAATAAAAGC GTTTTAAATCTGACCGCTGCCATCGATGCCGCAAACTCAGAGGAAAAACAAAACAGTGAC GCACGTCGCGTTATCAAAGCGAAAAATTACTCCCTGCTCCAAGTCCTCTCCATGCATGTG TGCAAAAATGTCTATTTCATGAGCCTCTCAACGCTAGCCTCCCTACTCAGATCACTGTCC TACTTGTTCTTCACCGATGCCAATTTTTTTAATGTGTTCATACCGTTGTTTATGAAGCAC ATGGCGGATCTCAGCAACGTGGACATTTTGAACATAACTCAGGCCTACAACAAGCAAAAG ATCCAAAACAAATATTTCTACTACTTGCTGGCAAAGCAGTACCAGAGCAACCGTTCCGAG GAAACGAAAAATGCAGACCCGAAAATTAGGCTAGTTGGCTAG
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  • Fasta :-

    MLAKRLLLNARGLPNLARHNSIRRRGTIAWARKLSSSHERATNFGKKKAKNGSKEIGKGD TKSIDHPADEKPSNFQEHNGGSKGILTQMGSKNGNKQMAGELPNLVLAILKEKSSQQSEK KKTLIDQYKQIVSARLEGGSQNGEGKKDAPNFADIFSTLYLCYAEKIFDLDFVTKVSAAL EGLLGGQSGGHGGRGEGGRDALNEATINHCMMMFHYLSALNVKNVTLCNQVRDYIVSHEV PPLVIYHYLECLSLLADSSDRSGKSNLRDYVIPVVDVFLESFYIFNNYLLLRILHFLHKL GFMDTELFLLLTRKINKNVYRENANRFELCLLARTYALYKKENITFSNYLCEDLLRSLTK YEDNFQGDQDGPVSQPDSQPGSIQVSHPDSHPDSHPDSHPDSHPDSHPDNQPDSHPDNQP DSHPDNQPDSQPENAPYVLEIENVNRQNYPLFGHPLYNDGLNFYAFFVDAKTTNREKCFE RKNNLHVTFINGDVSEKERQGTPPRMSEWHKLFLYDEYKEKDIKNEPFVKLEDTQKKGRQ MVQSYNQFLAENLHFQFSHKKIAQLFEQVSELMDKVKVDFSTDAEAHTEMDDQAVHQYKK KILYVENYYIGHIFHIVDSLLSLKAHHNCATFKKMESKILNAIKNNELYIIDNFDSDEIK SLLIFLSHTNRNYKEAFIYGLTHRMVDLYINNLCRPNTLSTFFYFLLNFTKQRVVRKNRF NHTIRNVIYNSYSWLNDNKSVLNLTAAIDAANSEEKQNSDARRVIKAKNYSLLQVLSMHV CKNVYFMSLSTLASLLRSLSYLFFTDANFFNVFIPLFMKHMADLSNVDILNITQAYNKQK IQNKYFYYLLAKQYQSNRSEETKNADPKIRLVG

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_084702262 SSSDRSGKSN0.996unspPVX_084702262 SSSDRSGKSN0.996unspPVX_084702262 SSSDRSGKSN0.996unspPVX_084702390 SSHPDSHPDS0.994unspPVX_084702394 SSHPDSHPDS0.997unspPVX_084702398 SSHPDSHPDS0.997unspPVX_084702402 SSHPDSHPDS0.997unspPVX_084702406 SSHPDSHPDN0.996unspPVX_084702414 SNQPDSHPDN0.994unspPVX_084702422 SNQPDSHPDN0.994unspPVX_084702430 SNQPDSQPEN0.992unspPVX_084702495 SNGDVSEKER0.997unspPVX_08470237 SKLSSSHERA0.997unspPVX_084702118 SSSQQSEKKK0.993unsp
PVX_084702      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India