PVX_091434 | rhoptry neck protein 4

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      

  • Computed_GO_Functions:  catalytic activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

No Results
No Results

  • Fasta :-

    >PVX_091434 MSRKRVFLLCIFLAISAVVDEAESFRKPDAAANVSFLEFTADGNAEEGQAQPSEPIVNTQ PLQENVSEAAPHSEESTGGSAEKGSGGHEETPHAGEHDKGSGGSNGSSESNGSVLADGHA EEAPNEQVSSEKNDGHSESSTTGSHSDKEELDLYTSSPSDKEENSAPAMGGMHNTVGLRG GSASESAAPSEEKASEENVPHEVADKNGEDTSQEGSHAGALSPAHVGGESGESGGEHGEH GEHAEHGEHGEHGEHGEHAEHGEHGEHGEHAEHGEHGEHGEHGEHGEHAEQEEHQIYGTI HPEAEASILPALKEKGIHVSSPERVILEIIESAKEGIKGLLKLRKSKDTGKLLEEALEKL NINQRDLHANNNFITLEMYDRILSEMFKILTEMSFYKDGHFYETLGLNKSILNQSLKEIK IKMLRTIGVPYTKLPPIVKNKEKESTCAANNLIISITSKELAQRMAIMFAKWLAPEEYGS VVDLDKSIELNVLCAGAPILVQQWKYYQNMLGFETGNEHAFLNLIDELLVIDKRHSNNEA YSKVIRKIKKSKAFNYCTKVMRIAGNISSIPFNHENNKTPSYSIIGSLGNLVKAHMGNYY VAIANRINSYFAYAEKRNKKNSPLKVVSVCTLLHLTDMLHNCSDEHLKNILDLNTLKLNI LNMQGRRVLQPLVKMSFLGAAQNPALKEICEPSNHLVDETLSKLLNLLSTGSHELLAAEV EKRGFDEDYIQEEIKNINESDNNVRDKGEDEVENLIFEDL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_091434.fa Sequence name : PVX_091434 Sequence length : 760 VALUES OF COMPUTED PARAMETERS Coef20 : 5.108 CoefTot : 1.029 ChDiff : -54 ZoneTo : 19 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.165 2.276 0.269 0.714 MesoH : -0.639 0.314 -0.424 0.251 MuHd_075 : 20.035 5.642 4.738 3.478 MuHd_095 : 6.399 8.242 4.224 2.274 MuHd_100 : 0.993 4.665 2.407 1.814 MuHd_105 : 4.363 5.955 1.039 2.480 Hmax_075 : 16.887 15.750 2.575 5.160 Hmax_095 : 14.525 18.637 4.295 5.031 Hmax_100 : 13.000 17.800 3.802 5.800 Hmax_105 : 15.283 17.150 1.685 5.215 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9601 0.0399 DFMC : 0.9538 0.0462
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 760 PVX_091434 MSRKRVFLLCIFLAISAVVDEAESFRKPDAAANVSFLEFTADGNAEEGQAQPSEPIVNTQPLQENVSEAAPHSEESTGGS 80 AEKGSGGHEETPHAGEHDKGSGGSNGSSESNGSVLADGHAEEAPNEQVSSEKNDGHSESSTTGSHSDKEELDLYTSSPSD 160 KEENSAPAMGGMHNTVGLRGGSASESAAPSEEKASEENVPHEVADKNGEDTSQEGSHAGALSPAHVGGESGESGGEHGEH 240 GEHAEHGEHGEHGEHGEHAEHGEHGEHGEHAEHGEHGEHGEHGEHGEHAEQEEHQIYGTIHPEAEASILPALKEKGIHVS 320 SPERVILEIIESAKEGIKGLLKLRKSKDTGKLLEEALEKLNINQRDLHANNNFITLEMYDRILSEMFKILTEMSFYKDGH 400 FYETLGLNKSILNQSLKEIKIKMLRTIGVPYTKLPPIVKNKEKESTCAANNLIISITSKELAQRMAIMFAKWLAPEEYGS 480 VVDLDKSIELNVLCAGAPILVQQWKYYQNMLGFETGNEHAFLNLIDELLVIDKRHSNNEAYSKVIRKIKKSKAFNYCTKV 560 MRIAGNISSIPFNHENNKTPSYSIIGSLGNLVKAHMGNYYVAIANRINSYFAYAEKRNKKNSPLKVVSVCTLLHLTDMLH 640 NCSDEHLKNILDLNTLKLNILNMQGRRVLQPLVKMSFLGAAQNPALKEICEPSNHLVDETLSKLLNLLSTGSHELLAAEV 720 EKRGFDEDYIQEEIKNINESDNNVRDKGEDEVENLIFEDL 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ........................................ 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_091434 3 ----MSR|KR 0.069 . PVX_091434 4 ---MSRK|RV 0.084 . PVX_091434 5 --MSRKR|VF 0.115 . PVX_091434 26 DEAESFR|KP 0.099 . PVX_091434 27 EAESFRK|PD 0.083 . PVX_091434 83 TGGSAEK|GS 0.096 . PVX_091434 99 HAGEHDK|GS 0.094 . PVX_091434 132 EQVSSEK|ND 0.075 . PVX_091434 148 TGSHSDK|EE 0.071 . PVX_091434 161 TSSPSDK|EE 0.079 . PVX_091434 179 HNTVGLR|GG 0.108 . PVX_091434 193 AAPSEEK|AS 0.069 . PVX_091434 206 PHEVADK|NG 0.057 . PVX_091434 313 SILPALK|EK 0.064 . PVX_091434 315 LPALKEK|GI 0.087 . PVX_091434 324 HVSSPER|VI 0.093 . PVX_091434 334 EIIESAK|EG 0.067 . PVX_091434 338 SAKEGIK|GL 0.061 . PVX_091434 342 GIKGLLK|LR 0.054 . PVX_091434 344 KGLLKLR|KS 0.075 . PVX_091434 345 GLLKLRK|SK 0.143 . PVX_091434 347 LKLRKSK|DT 0.265 . PVX_091434 351 KSKDTGK|LL 0.074 . PVX_091434 359 LEEALEK|LN 0.059 . PVX_091434 365 KLNINQR|DL 0.135 . PVX_091434 381 TLEMYDR|IL 0.108 . PVX_091434 388 ILSEMFK|IL 0.069 . PVX_091434 397 TEMSFYK|DG 0.083 . PVX_091434 409 ETLGLNK|SI 0.061 . PVX_091434 417 ILNQSLK|EI 0.068 . PVX_091434 420 QSLKEIK|IK 0.056 . PVX_091434 422 LKEIKIK|ML 0.083 . PVX_091434 425 IKIKMLR|TI 0.088 . PVX_091434 433 IGVPYTK|LP 0.056 . PVX_091434 439 KLPPIVK|NK 0.059 . PVX_091434 441 PPIVKNK|EK 0.069 . PVX_091434 443 IVKNKEK|ES 0.067 . PVX_091434 459 IISITSK|EL 0.071 . PVX_091434 464 SKELAQR|MA 0.100 . PVX_091434 471 MAIMFAK|WL 0.089 . PVX_091434 486 SVVDLDK|SI 0.077 . PVX_091434 505 ILVQQWK|YY 0.080 . PVX_091434 533 ELLVIDK|RH 0.058 . PVX_091434 534 LLVIDKR|HS 0.128 . PVX_091434 543 NNEAYSK|VI 0.067 . PVX_091434 546 AYSKVIR|KI 0.114 . PVX_091434 547 YSKVIRK|IK 0.080 . PVX_091434 549 KVIRKIK|KS 0.119 . PVX_091434 550 VIRKIKK|SK 0.142 . PVX_091434 552 RKIKKSK|AF 0.079 . PVX_091434 559 AFNYCTK|VM 0.069 . PVX_091434 562 YCTKVMR|IA 0.117 . PVX_091434 578 FNHENNK|TP 0.066 . PVX_091434 593 SLGNLVK|AH 0.061 . PVX_091434 606 YVAIANR|IN 0.081 . PVX_091434 616 YFAYAEK|RN 0.056 . PVX_091434 617 FAYAEKR|NK 0.136 . PVX_091434 619 YAEKRNK|KN 0.063 . PVX_091434 620 AEKRNKK|NS 0.211 . PVX_091434 625 KKNSPLK|VV 0.084 . PVX_091434 648 CSDEHLK|NI 0.061 . PVX_091434 657 LDLNTLK|LN 0.056 . PVX_091434 666 ILNMQGR|RV 0.131 . PVX_091434 667 LNMQGRR|VL 0.123 . PVX_091434 674 VLQPLVK|MS 0.062 . PVX_091434 687 AQNPALK|EI 0.060 . PVX_091434 703 VDETLSK|LL 0.057 . PVX_091434 722 LAAEVEK|RG 0.066 . PVX_091434 723 AAEVEKR|GF 0.192 . PVX_091434 735 YIQEEIK|NI 0.068 . PVX_091434 745 ESDNNVR|DK 0.112 . PVX_091434 747 DNNVRDK|GE 0.097 . ____________________________^_________________

  • Fasta :-

    >PVX_091434 ATGTCTCGTAAAAGGGTTTTTCTTCTGTGCATTTTTCTGGCCATTTCCGCCGTTGTTGAC GAAGCCGAGTCGTTCAGGAAGCCAGACGCGGCAGCGAACGTCTCCTTCCTGGAGTTCACA GCAGATGGCAACGCTGAAGAGGGGCAGGCGCAGCCAAGTGAACCCATCGTTAACACCCAG CCGCTGCAGGAAAATGTAAGTGAAGCCGCTCCCCACTCGGAGGAGTCCACTGGGGGAAGC GCGGAGAAGGGAAGTGGCGGCCACGAGGAAACCCCCCACGCAGGAGAACATGACAAAGGT AGTGGCGGAAGCAACGGGAGCAGCGAAAGCAACGGAAGCGTCTTGGCTGATGGCCACGCC GAAGAAGCGCCGAACGAGCAGGTGAGTAGCGAGAAGAACGACGGACACAGTGAAAGCAGC ACCACGGGCTCACACTCAGATAAGGAGGAGCTGGACTTGTATACGTCCTCCCCCTCCGAT AAAGAAGAAAACAGCGCCCCTGCCATGGGTGGTATGCACAACACGGTAGGCCTGAGGGGG GGAAGCGCCTCTGAATCGGCGGCCCCAAGTGAAGAGAAAGCATCCGAAGAGAATGTCCCC CATGAAGTGGCAGATAAAAATGGGGAGGACACCTCACAGGAGGGTTCCCACGCGGGAGCG CTGTCACCTGCGCATGTGGGTGGCGAGAGTGGCGAGAGTGGCGGCGAGCACGGAGAGCAC GGTGAACACGCTGAACATGGGGAGCACGGAGAGCACGGAGAGCACGGTGAACACGCTGAA CATGGGGAGCACGGAGAGCACGGTGAACACGCTGAACATGGGGAGCACGGAGAGCACGGT GAACATGGCGAGCACGGTGAACATGCTGAACAGGAGGAGCACCAAATCTATGGGACGATT CACCCCGAGGCGGAAGCCTCCATTTTGCCCGCGCTGAAGGAAAAGGGCATCCACGTGTCC AGCCCAGAAAGGGTAATCCTCGAGATCATCGAAAGCGCCAAGGAGGGAATAAAAGGATTG CTGAAGCTCCGGAAGAGCAAAGACACAGGCAAGCTGCTGGAGGAGGCACTAGAAAAGCTA AACATAAACCAAAGGGATCTGCATGCAAACAATAATTTCATTACCCTAGAAATGTATGAC CGGATCCTCTCCGAAATGTTTAAAATATTAACAGAAATGTCATTCTATAAGGATGGCCAT TTTTACGAAACGTTAGGTTTGAATAAATCTATACTAAATCAATCGCTGAAAGAAATTAAA ATAAAAATGTTGAGGACCATTGGAGTGCCATACACGAAGCTACCGCCAATCGTTAAGAAC AAAGAGAAGGAAAGCACATGTGCTGCGAACAATCTCATCATTAGCATTACATCAAAAGAG CTAGCTCAACGAATGGCTATCATGTTCGCAAAATGGCTAGCTCCAGAAGAATACGGGTCT GTCGTCGATTTAGATAAAAGCATAGAATTAAATGTCCTCTGCGCAGGGGCACCTATCCTA GTACAGCAATGGAAATATTACCAAAACATGTTAGGGTTCGAAACGGGAAATGAACATGCC TTCTTAAACCTCATCGATGAGTTGCTAGTCATCGACAAGAGACACAGTAACAATGAAGCG TATTCAAAAGTGATAAGGAAAATAAAAAAATCGAAAGCCTTTAATTATTGTACTAAAGTT ATGAGGATTGCAGGGAATATTTCTTCCATTCCATTTAATCATGAAAATAATAAAACGCCT AGCTACTCCATCATCGGGTCGTTAGGTAACCTGGTGAAGGCTCACATGGGGAACTACTAC GTTGCCATTGCTAATAGGATTAACTCCTATTTTGCCTATGCCGAGAAGAGGAACAAAAAA AACAGCCCCTTAAAAGTTGTCTCCGTCTGTACTCTCCTTCATTTGACCGACATGCTCCAC AATTGCTCTGATGAACATTTAAAGAATATTTTGGACCTCAACACTTTGAAGCTTAACATT CTGAACATGCAGGGCAGGCGCGTGCTGCAGCCCCTCGTCAAGATGAGCTTCCTCGGCGCC GCGCAGAACCCCGCCCTCAAGGAGATCTGCGAGCCGAGCAACCACCTAGTGGACGAGACC CTCTCCAAGCTGCTCAACCTGCTCTCGACCGGTTCGCACGAACTCCTCGCGGCCGAGGTG GAAAAGCGCGGCTTCGACGAGGACTACATCCAGGAGGAAATCAAAAACATAAACGAAAGC GACAACAACGTTCGGGACAAGGGCGAAGACGAAGTGGAAAATCTCATTTTTGAAGACTTG TGA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_091434137 SNDGHSESST0.994unspPVX_091434137 SNDGHSESST0.994unspPVX_091434137 SNDGHSESST0.994unspPVX_091434144 SSTTGSHSDK0.994unspPVX_091434146 STGSHSDKEE0.998unspPVX_091434159 STSSPSDKEE0.995unspPVX_091434182 SLRGGSASES0.993unspPVX_091434195 SEEKASEENV0.991unspPVX_091434233 SESGESGGEH0.994unspPVX_091434415 SILNQSLKEI0.991unspPVX_091434480 SEEYGSVVDL0.993unspPVX_091434536 SDKRHSNNEA0.997unspPVX_09143473 SAAPHSEEST0.993unspPVX_091434129 SNEQVSSEKN0.994unsp
PVX_091434      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India