PVX_092275 | apical membrane antigen 1

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  • Fasta :-

    >PVX_092275 MNKIYYIIFLSAQCLVHIGKCGRNQKPSRLTRSANNVLLEKGPTVERSTRMSNPWKAFME KYDIERTHSSGVRVDLGEDAEVENAKYRIPAGRCPVFGKGIVIENSDVSFLRPVATGDQK LKDGGFAFPNANDHISPMTLANLKERYKDNVEMMKLNDIALCRTHAASFVMAGDQNSSYR HPAVYDEKEKTCHMLYLSAQENMGPRYCSPDAQNRDAVFCFKPDKNESFENLVYLSKNVR NDWDKKCPRKNLGNAKFGLWVDGNCEEIPYVKEVEAEDLRECNRIVFGASASDQPTQYEE EMTDYQKIQQGFRQNNREMIKSAFLPVGAFNSDNFKSKGRGFNWANFDSVKKKCYIFNTK PTCLINDKNFIATTALSHPQEVDLEFPCSIYKDEIEREIKKQSRNMNLYSVDGERIVLPR IFISNDKESIKCPCEPERISNSTCNFYVCNCVEKRAEIKENNQVVIKEEFRDYYENGEEK SNKQMLLIIIGITGGVCVVALASMAYFRKKANNDKYDKMDQAEGYGKPTTRKDEMLDPEA SFWGEDKRASHTTPVLMEKPYY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_092275.fa Sequence name : PVX_092275 Sequence length : 562 VALUES OF COMPUTED PARAMETERS Coef20 : 3.909 CoefTot : -0.858 ChDiff : 1 ZoneTo : 39 KR : 6 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.341 2.724 0.627 0.891 MesoH : -1.249 -0.074 -0.574 0.063 MuHd_075 : 18.224 11.205 7.539 3.456 MuHd_095 : 23.684 20.043 9.781 5.526 MuHd_100 : 29.918 23.837 11.539 6.563 MuHd_105 : 35.585 21.386 11.402 7.797 Hmax_075 : 16.333 19.600 4.572 6.130 Hmax_095 : 15.400 22.500 6.218 -0.580 Hmax_100 : 15.700 23.500 6.218 6.080 Hmax_105 : 6.000 23.500 7.029 3.210 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9001 0.0999 DFMC : 0.8788 0.1212
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 562 PVX_092275 MNKIYYIIFLSAQCLVHIGKCGRNQKPSRLTRSANNVLLEKGPTVERSTRMSNPWKAFMEKYDIERTHSSGVRVDLGEDA 80 EVENAKYRIPAGRCPVFGKGIVIENSDVSFLRPVATGDQKLKDGGFAFPNANDHISPMTLANLKERYKDNVEMMKLNDIA 160 LCRTHAASFVMAGDQNSSYRHPAVYDEKEKTCHMLYLSAQENMGPRYCSPDAQNRDAVFCFKPDKNESFENLVYLSKNVR 240 NDWDKKCPRKNLGNAKFGLWVDGNCEEIPYVKEVEAEDLRECNRIVFGASASDQPTQYEEEMTDYQKIQQGFRQNNREMI 320 KSAFLPVGAFNSDNFKSKGRGFNWANFDSVKKKCYIFNTKPTCLINDKNFIATTALSHPQEVDLEFPCSIYKDEIEREIK 400 KQSRNMNLYSVDGERIVLPRIFISNDKESIKCPCEPERISNSTCNFYVCNCVEKRAEIKENNQVVIKEEFRDYYENGEEK 480 SNKQMLLIIIGITGGVCVVALASMAYFRKKANNDKYDKMDQAEGYGKPTTRKDEMLDPEASFWGEDKRASHTTPVLMEKP 560 YY 640 ...............................P................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PVX_092275 3 ----MNK|IY 0.065 . PVX_092275 20 CLVHIGK|CG 0.063 . PVX_092275 23 HIGKCGR|NQ 0.092 . PVX_092275 26 KCGRNQK|PS 0.104 . PVX_092275 29 RNQKPSR|LT 0.102 . PVX_092275 32 KPSRLTR|SA 0.694 *ProP* PVX_092275 41 NNVLLEK|GP 0.060 . PVX_092275 47 KGPTVER|ST 0.121 . PVX_092275 50 TVERSTR|MS 0.254 . PVX_092275 56 RMSNPWK|AF 0.089 . PVX_092275 61 WKAFMEK|YD 0.074 . PVX_092275 66 EKYDIER|TH 0.084 . PVX_092275 73 THSSGVR|VD 0.082 . PVX_092275 86 AEVENAK|YR 0.077 . PVX_092275 88 VENAKYR|IP 0.090 . PVX_092275 93 YRIPAGR|CP 0.093 . PVX_092275 99 RCPVFGK|GI 0.076 . PVX_092275 112 SDVSFLR|PV 0.127 . PVX_092275 120 VATGDQK|LK 0.059 . PVX_092275 122 TGDQKLK|DG 0.090 . PVX_092275 144 MTLANLK|ER 0.054 . PVX_092275 146 LANLKER|YK 0.186 . PVX_092275 148 NLKERYK|DN 0.065 . PVX_092275 155 DNVEMMK|LN 0.068 . PVX_092275 163 NDIALCR|TH 0.085 . PVX_092275 180 DQNSSYR|HP 0.092 . PVX_092275 188 PAVYDEK|EK 0.058 . PVX_092275 190 VYDEKEK|TC 0.057 . PVX_092275 206 QENMGPR|YC 0.101 . PVX_092275 215 SPDAQNR|DA 0.117 . PVX_092275 222 DAVFCFK|PD 0.057 . PVX_092275 225 FCFKPDK|NE 0.059 . PVX_092275 237 NLVYLSK|NV 0.062 . PVX_092275 240 YLSKNVR|ND 0.085 . PVX_092275 245 VRNDWDK|KC 0.065 . PVX_092275 246 RNDWDKK|CP 0.097 . PVX_092275 249 WDKKCPR|KN 0.080 . PVX_092275 250 DKKCPRK|NL 0.109 . PVX_092275 256 KNLGNAK|FG 0.066 . PVX_092275 272 EEIPYVK|EV 0.071 . PVX_092275 280 VEAEDLR|EC 0.074 . PVX_092275 284 DLRECNR|IV 0.106 . PVX_092275 307 EMTDYQK|IQ 0.054 . PVX_092275 313 KIQQGFR|QN 0.080 . PVX_092275 317 GFRQNNR|EM 0.085 . PVX_092275 321 NNREMIK|SA 0.085 . PVX_092275 336 FNSDNFK|SK 0.127 . PVX_092275 338 SDNFKSK|GR 0.089 . PVX_092275 340 NFKSKGR|GF 0.112 . PVX_092275 351 ANFDSVK|KK 0.069 . PVX_092275 352 NFDSVKK|KC 0.072 . PVX_092275 353 FDSVKKK|CY 0.151 . PVX_092275 360 CYIFNTK|PT 0.061 . PVX_092275 368 TCLINDK|NF 0.057 . PVX_092275 392 FPCSIYK|DE 0.062 . PVX_092275 397 YKDEIER|EI 0.084 . PVX_092275 400 EIEREIK|KQ 0.100 . PVX_092275 401 IEREIKK|QS 0.087 . PVX_092275 404 EIKKQSR|NM 0.076 . PVX_092275 415 YSVDGER|IV 0.095 . PVX_092275 420 ERIVLPR|IF 0.095 . PVX_092275 427 IFISNDK|ES 0.057 . PVX_092275 431 NDKESIK|CP 0.063 . PVX_092275 438 CPCEPER|IS 0.079 . PVX_092275 454 VCNCVEK|RA 0.085 . PVX_092275 455 CNCVEKR|AE 0.202 . PVX_092275 459 EKRAEIK|EN 0.070 . PVX_092275 467 NNQVVIK|EE 0.061 . PVX_092275 471 VIKEEFR|DY 0.099 . PVX_092275 480 YENGEEK|SN 0.086 . PVX_092275 483 GEEKSNK|QM 0.073 . PVX_092275 508 ASMAYFR|KK 0.078 . PVX_092275 509 SMAYFRK|KA 0.096 . PVX_092275 510 MAYFRKK|AN 0.143 . PVX_092275 515 KKANNDK|YD 0.067 . PVX_092275 518 NNDKYDK|MD 0.062 . PVX_092275 527 QAEGYGK|PT 0.068 . PVX_092275 531 YGKPTTR|KD 0.088 . PVX_092275 532 GKPTTRK|DE 0.080 . PVX_092275 547 SFWGEDK|RA 0.071 . PVX_092275 548 FWGEDKR|AS 0.193 . PVX_092275 559 TPVLMEK|PY 0.069 . ____________________________^_________________

  • Fasta :-

    >PVX_092275 ATGAATAAAATATACTACATAATCTTTTTAAGCGCCCAGTGCCTTGTGCACATTGGGAAG TGCGGGCGAAACCAGAAGCCGAGCAGGCTGACCCGTAGCGCCAACAACGTTCTACTGGAA AAGGGGCCTACCGTTGAGAGAAGCACACGAATGAGTAACCCCTGGAAAGCGTTCATGGAA AAATACGACATCGAAAGAACACACAGTTCTGGGGTTCGAGTGGATTTAGGGGAAGATGCA GAAGTGGAAAATGCAAAGTACAGAATTCCAGCTGGAAGATGTCCTGTTTTTGGAAAGGGT ATCGTTATAGAGAATTCTGACGTTAGCTTCTTAAGACCTGTGGCTACAGGAGATCAGAAG CTGAAGGATGGAGGTTTCGCCTTCCCCAATGCGAATGACCATATCTCCCCAATGACATTA GCGAACCTTAAGGAAAGGTATAAAGACAATGTAGAGATGATGAAGTTAAACGATATAGCT TTGTGCAGAACCCACGCAGCTAGCTTTGTCATGGCAGGGGATCAAAATTCGTCCTACAGA CACCCAGCTGTATACGACGAAAAGGAAAAAACATGCCACATGTTGTATTTATCAGCGCAG GAAAATATGGGTCCGAGGTACTGCAGCCCAGATGCACAAAATAGAGATGCCGTGTTCTGC TTCAAGCCAGATAAAAATGAAAGCTTTGAAAACCTGGTGTATTTGAGCAAAAATGTGCGT AATGATTGGGATAAAAAATGCCCCCGTAAAAATTTAGGAAACGCCAAGTTCGGATTATGG GTGGATGGGAACTGCGAAGAAATTCCATACGTTAAAGAAGTGGAGGCAGAGGATCTGCGC GAATGCAACCGAATCGTTTTCGGAGCGAGTGCCTCAGATCAACCAACTCAGTATGAAGAA GAAATGACGGATTATCAAAAAATACAACAAGGGTTTAGACAAAACAACCGAGAGATGATT AAAAGTGCCTTTCTTCCAGTGGGTGCATTCAACTCGGATAATTTCAAAAGTAAAGGAAGA GGATTTAACTGGGCAAATTTCGATTCTGTAAAAAAGAAGTGTTACATTTTTAATACCAAA CCGACTTGCCTCATTAATGACAAAAATTTTATTGCAACAACGGCGTTATCTCACCCACAA GAAGTAGACCTGGAGTTCCCCTGCAGCATATATAAAGACGAAATTGAAAGAGAAATTAAG AAACAATCGAGGAACATGAATCTGTACAGTGTTGATGGGGAACGCATTGTCCTGCCGAGG ATATTTATCTCCAACGATAAGGAGAGTATCAAATGTCCCTGCGAACCTGAGCGCATTTCC AACAGTACCTGCAACTTTTACGTTTGTAACTGTGTAGAGAAAAGGGCGGAAATTAAGGAA AATAACCAAGTTGTTATAAAGGAAGAATTTAGGGATTATTACGAAAATGGGGAGGAAAAA TCGAACAAGCAGATGCTACTAATCATTATCGGAATAACTGGTGGCGTGTGCGTCGTCGCG CTGGCCTCTATGGCCTACTTCAGGAAGAAGGCTAACAATGATAAGTATGACAAGATGGAC CAGGCAGAGGGGTACGGGAAGCCCACCACCAGGAAGGACGAGATGCTCGACCCCGAGGCC TCCTTCTGGGGCGAGGACAAGCGGGCCTCCCACACCACGCCCGTGCTGATGGAGAAGCCG TACTACTGA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_092275550 SDKRASHTTP0.991unspPVX_092275550 SDKRASHTTP0.991unspPVX_092275550 SDKRASHTTP0.991unspPVX_092275290 SVFGASASDQ0.994unspPVX_092275429 SNDKESIKCP0.995unsp
PVX_092275      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India