PVX_093540 | methionine aminopeptidase 1c, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_093540SP0.0060880.9926240.001288CS pos: 22-23. GGG-VA. Pr: 0.4366
No Results

  • Fasta :-

    >PVX_093540 MKGPTLVLLAWALLCLCRGGGGVAIVRSGSSVSSGRSGGSARSVSRVSRIQSVNRVHRAN RVRPRRGFVPGGGDSQGSCAKQRRPRRPKLRRNHLHSTSAGEGFSNTVHHDVKKNTKNYS EDGPPASFHRYSENMKTRKNVHPSIRITQFDRTFMKCKEGYNRRYSHLKDSELFGSFRFV GRQKKGITSPRYYLPKYVERPNYHRTGTPVYVPYGSGGQRSGGQMSGSQGSADQRSDFNE RGKSPHPYGNVKREEEIETIRSNCQFARELMDDVSYIICEGVTTNDLDIYILNKCINNGY YPSPLNYHLFPKSSCISINEILCHGIPDNNILYENDIVKVDISVFKDGFHADMCESFLVP KLTKNEKKKKKKFYDFIYLNDKLRTRHTKFILKYHFDLTTNKVVKTGKHCSIKRIRYDPP NSKDRPTEQHRSYDDNSNAVMSSGDLGGNAPFPGGDYHNAADGGALPGEDLDELEQFHRQ YDEQVIYDKQQSSRTYEDLQSYLYRQSRGPPSDHGNRSDHNRFAFFDKRKPGVDELKRLM REKNLDLIRTAHECTMEAIRVCKPGVPFSAIGEAIESHLERKNKGHLRYAVVPHLCGHNI GRNFHEEPFIMHTRNDDDRLLCENLVFTIEPIISERPCDFIMWPDNWTLSNARYFFSAQF EHTIVVRKDGAEVLTGKTDRSPKFVWECEKG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_093540.fa Sequence name : PVX_093540 Sequence length : 691 VALUES OF COMPUTED PARAMETERS Coef20 : 4.227 CoefTot : -1.103 ChDiff : 27 ZoneTo : 101 KR : 21 DE : 1 CleavSite : 76 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.476 1.765 0.336 0.589 MesoH : -0.885 0.138 -0.350 0.202 MuHd_075 : 32.355 17.893 8.068 8.020 MuHd_095 : 37.476 16.343 8.737 8.440 MuHd_100 : 36.068 15.392 7.964 8.365 MuHd_105 : 45.019 21.722 9.662 9.065 Hmax_075 : -13.212 -7.263 -4.949 -2.987 Hmax_095 : 2.188 4.988 0.887 2.310 Hmax_100 : 1.900 7.000 -2.599 3.020 Hmax_105 : 10.033 9.100 1.577 2.660 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0041 0.9959 DFMC : 0.0025 0.9975 This protein is probably imported in mitochondria. f(Ser) = 0.1485 f(Arg) = 0.1782 CMi = 0.46483 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 691 PVX_093540 MKGPTLVLLAWALLCLCRGGGGVAIVRSGSSVSSGRSGGSARSVSRVSRIQSVNRVHRANRVRPRRGFVPGGGDSQGSCA 80 KQRRPRRPKLRRNHLHSTSAGEGFSNTVHHDVKKNTKNYSEDGPPASFHRYSENMKTRKNVHPSIRITQFDRTFMKCKEG 160 YNRRYSHLKDSELFGSFRFVGRQKKGITSPRYYLPKYVERPNYHRTGTPVYVPYGSGGQRSGGQMSGSQGSADQRSDFNE 240 RGKSPHPYGNVKREEEIETIRSNCQFARELMDDVSYIICEGVTTNDLDIYILNKCINNGYYPSPLNYHLFPKSSCISINE 320 ILCHGIPDNNILYENDIVKVDISVFKDGFHADMCESFLVPKLTKNEKKKKKKFYDFIYLNDKLRTRHTKFILKYHFDLTT 400 NKVVKTGKHCSIKRIRYDPPNSKDRPTEQHRSYDDNSNAVMSSGDLGGNAPFPGGDYHNAADGGALPGEDLDELEQFHRQ 480 YDEQVIYDKQQSSRTYEDLQSYLYRQSRGPPSDHGNRSDHNRFAFFDKRKPGVDELKRLMREKNLDLIRTAHECTMEAIR 560 VCKPGVPFSAIGEAIESHLERKNKGHLRYAVVPHLCGHNIGRNFHEEPFIMHTRNDDDRLLCENLVFTIEPIISERPCDF 640 IMWPDNWTLSNARYFFSAQFEHTIVVRKDGAEVLTGKTDRSPKFVWECEKG 720 .................................................................P.............. 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PVX_093540 2 -----MK|GP 0.066 . PVX_093540 18 ALLCLCR|GG 0.086 . PVX_093540 27 GGVAIVR|SG 0.100 . PVX_093540 36 SSVSSGR|SG 0.171 . PVX_093540 42 RSGGSAR|SV 0.403 . PVX_093540 46 SARSVSR|VS 0.090 . PVX_093540 49 SVSRVSR|IQ 0.350 . PVX_093540 55 RIQSVNR|VH 0.087 . PVX_093540 58 SVNRVHR|AN 0.265 . PVX_093540 61 RVHRANR|VR 0.173 . PVX_093540 63 HRANRVR|PR 0.110 . PVX_093540 65 ANRVRPR|RG 0.095 . PVX_093540 66 NRVRPRR|GF 0.671 *ProP* PVX_093540 81 SQGSCAK|QR 0.065 . PVX_093540 83 GSCAKQR|RP 0.077 . PVX_093540 84 SCAKQRR|PR 0.197 . PVX_093540 86 AKQRRPR|RP 0.184 . PVX_093540 87 KQRRPRR|PK 0.345 . PVX_093540 89 RRPRRPK|LR 0.153 . PVX_093540 91 PRRPKLR|RN 0.100 . PVX_093540 92 RRPKLRR|NH 0.149 . PVX_093540 113 TVHHDVK|KN 0.066 . PVX_093540 114 VHHDVKK|NT 0.101 . PVX_093540 117 DVKKNTK|NY 0.066 . PVX_093540 130 PPASFHR|YS 0.123 . PVX_093540 136 RYSENMK|TR 0.065 . PVX_093540 138 SENMKTR|KN 0.087 . PVX_093540 139 ENMKTRK|NV 0.186 . PVX_093540 146 NVHPSIR|IT 0.093 . PVX_093540 152 RITQFDR|TF 0.083 . PVX_093540 156 FDRTFMK|CK 0.072 . PVX_093540 158 RTFMKCK|EG 0.064 . PVX_093540 163 CKEGYNR|RY 0.089 . PVX_093540 164 KEGYNRR|YS 0.144 . PVX_093540 169 RRYSHLK|DS 0.085 . PVX_093540 178 ELFGSFR|FV 0.190 . PVX_093540 182 SFRFVGR|QK 0.099 . PVX_093540 184 RFVGRQK|KG 0.060 . PVX_093540 185 FVGRQKK|GI 0.295 . PVX_093540 191 KGITSPR|YY 0.101 . PVX_093540 196 PRYYLPK|YV 0.099 . PVX_093540 200 LPKYVER|PN 0.098 . PVX_093540 205 ERPNYHR|TG 0.079 . PVX_093540 220 YGSGGQR|SG 0.155 . PVX_093540 235 QGSADQR|SD 0.135 . PVX_093540 241 RSDFNER|GK 0.101 . PVX_093540 243 DFNERGK|SP 0.089 . PVX_093540 252 HPYGNVK|RE 0.071 . PVX_093540 253 PYGNVKR|EE 0.185 . PVX_093540 261 EEIETIR|SN 0.102 . PVX_093540 268 SNCQFAR|EL 0.122 . PVX_093540 294 DIYILNK|CI 0.060 . PVX_093540 312 NYHLFPK|SS 0.107 . PVX_093540 339 YENDIVK|VD 0.061 . PVX_093540 346 VDISVFK|DG 0.079 . PVX_093540 361 ESFLVPK|LT 0.061 . PVX_093540 364 LVPKLTK|NE 0.056 . PVX_093540 367 KLTKNEK|KK 0.060 . PVX_093540 368 LTKNEKK|KK 0.102 . PVX_093540 369 TKNEKKK|KK 0.125 . PVX_093540 370 KNEKKKK|KK 0.103 . PVX_093540 371 NEKKKKK|KF 0.118 . PVX_093540 372 EKKKKKK|FY 0.161 . PVX_093540 382 FIYLNDK|LR 0.054 . PVX_093540 384 YLNDKLR|TR 0.093 . PVX_093540 386 NDKLRTR|HT 0.091 . PVX_093540 389 LRTRHTK|FI 0.242 . PVX_093540 393 HTKFILK|YH 0.064 . PVX_093540 402 FDLTTNK|VV 0.068 . PVX_093540 405 TTNKVVK|TG 0.061 . PVX_093540 408 KVVKTGK|HC 0.070 . PVX_093540 413 GKHCSIK|RI 0.072 . PVX_093540 414 KHCSIKR|IR 0.141 . PVX_093540 416 CSIKRIR|YD 0.086 . PVX_093540 423 YDPPNSK|DR 0.062 . PVX_093540 425 PPNSKDR|PT 0.150 . PVX_093540 431 RPTEQHR|SY 0.156 . PVX_093540 479 ELEQFHR|QY 0.091 . PVX_093540 489 EQVIYDK|QQ 0.057 . PVX_093540 494 DKQQSSR|TY 0.115 . PVX_093540 505 LQSYLYR|QS 0.113 . PVX_093540 508 YLYRQSR|GP 0.162 . PVX_093540 517 PSDHGNR|SD 0.110 . PVX_093540 522 NRSDHNR|FA 0.176 . PVX_093540 528 RFAFFDK|RK 0.063 . PVX_093540 529 FAFFDKR|KP 0.133 . PVX_093540 530 AFFDKRK|PG 0.083 . PVX_093540 537 PGVDELK|RL 0.059 . PVX_093540 538 GVDELKR|LM 0.113 . PVX_093540 541 ELKRLMR|EK 0.159 . PVX_093540 543 KRLMREK|NL 0.079 . PVX_093540 549 KNLDLIR|TA 0.091 . PVX_093540 560 CTMEAIR|VC 0.086 . PVX_093540 563 EAIRVCK|PG 0.097 . PVX_093540 581 IESHLER|KN 0.120 . PVX_093540 582 ESHLERK|NK 0.103 . PVX_093540 584 HLERKNK|GH 0.139 . PVX_093540 588 KNKGHLR|YA 0.104 . PVX_093540 602 CGHNIGR|NF 0.109 . PVX_093540 614 PFIMHTR|ND 0.097 . PVX_093540 619 TRNDDDR|LL 0.118 . PVX_093540 636 EPIISER|PC 0.088 . PVX_093540 653 WTLSNAR|YF 0.095 . PVX_093540 667 EHTIVVR|KD 0.102 . PVX_093540 668 HTIVVRK|DG 0.110 . PVX_093540 677 AEVLTGK|TD 0.055 . PVX_093540 680 LTGKTDR|SP 0.120 . PVX_093540 683 KTDRSPK|FV 0.333 . PVX_093540 690 FVWECEK|G- 0.063 . ____________________________^_________________

  • Fasta :-

    >PVX_093540 ATGAAGGGGCCTACGCTCGTGCTGCTGGCGTGGGCGCTCCTCTGCCTGTGCAGGGGGGGT GGCGGCGTTGCAATTGTGAGGAGTGGGAGCAGCGTCAGCAGTGGGAGAAGTGGGGGAAGC GCTCGAAGTGTCAGCCGCGTCAGCCGCATCCAAAGTGTCAACCGCGTCCACCGCGCCAAC CGCGTGCGGCCGCGGCGGGGGTTCGTCCCCGGGGGGGGGGACTCCCAAGGGAGCTGCGCA AAGCAGAGGCGCCCGCGCCGCCCCAAACTCAGAAGGAACCACCTACACAGCACCAGCGCA GGCGAAGGATTTTCCAACACAGTCCACCACGATGTGAAGAAGAACACAAAAAACTACTCG GAAGATGGCCCACCGGCGTCTTTCCACAGATACAGTGAAAATATGAAGACAAGGAAAAAC GTCCACCCGAGTATCCGCATAACCCAATTTGACAGAACGTTTATGAAGTGCAAGGAGGGG TACAACAGGAGGTACTCCCACCTGAAGGACAGCGAGCTGTTTGGCAGCTTCCGCTTTGTT GGGAGGCAAAAGAAGGGAATCACCTCTCCGAGGTATTATCTGCCCAAGTACGTGGAGCGG CCCAATTACCACCGCACGGGCACGCCTGTGTACGTGCCGTATGGGAGCGGCGGCCAGAGG AGCGGCGGCCAAATGAGTGGCAGCCAAGGGAGTGCCGACCAAAGGAGTGACTTCAATGAG AGGGGAAAATCCCCCCACCCGTATGGCAACGTCAAACGCGAGGAAGAAATCGAAACGATT AGGAGCAACTGCCAGTTCGCGCGAGAACTGATGGACGACGTGTCCTACATCATCTGCGAA GGAGTGACGACGAACGATTTAGATATTTACATCCTAAATAAGTGCATCAATAATGGCTAC TACCCCTCTCCTCTGAACTACCACCTCTTCCCAAAAAGCTCCTGCATCTCAATTAATGAA ATCCTTTGCCATGGAATCCCAGATAACAACATCCTCTACGAAAACGACATCGTCAAAGTA GACATCAGCGTCTTCAAAGATGGCTTCCACGCGGATATGTGTGAAAGTTTCCTTGTTCCT AAATTAACAAAAAATGAAAAAAAAAAAAAAAAAAAATTTTACGATTTTATATATTTGAAT GATAAGCTCCGGACGAGACACACCAAATTCATTTTGAAGTACCACTTTGACCTCACGACT AACAAAGTTGTGAAGACGGGAAAGCACTGCTCCATCAAACGGATCAGGTACGACCCCCCC AACTCGAAGGACCGCCCCACTGAGCAGCACCGCTCCTACGACGATAACAGCAATGCGGTG ATGAGCAGCGGCGACTTGGGGGGGAACGCACCCTTCCCCGGGGGGGATTACCACAACGCT GCTGATGGGGGGGCGCTCCCGGGGGAGGACCTCGACGAGCTCGAGCAGTTCCACAGGCAG TACGATGAGCAGGTCATCTACGATAAGCAGCAGAGCAGCAGAACGTATGAGGACCTCCAG AGCTACCTCTACAGGCAGAGTAGGGGCCCCCCAAGCGATCATGGCAACCGAAGCGATCAT AACCGGTTCGCCTTCTTCGACAAGAGGAAGCCGGGCGTGGACGAACTCAAACGCCTTATG CGTGAAAAAAACTTGGACCTCATAAGAACCGCCCACGAGTGCACCATGGAGGCCATCCGC GTCTGTAAGCCCGGTGTCCCCTTCAGTGCCATAGGGGAAGCAATAGAGAGCCACCTAGAA AGGAAGAATAAGGGCCACCTACGCTACGCAGTGGTCCCCCATCTGTGCGGACACAACATA GGGAGGAACTTCCACGAGGAGCCATTCATCATGCACACACGGAATGACGACGACAGACTG CTGTGCGAAAACCTCGTGTTTACCATTGAGCCAATTATTTCCGAGCGACCCTGCGACTTC ATTATGTGGCCGGACAACTGGACGTTAAGCAACGCCAGGTATTTCTTTTCCGCTCAGTTT GAGCATACCATCGTTGTGCGGAAGGACGGCGCGGAGGTGCTCACCGGGAAAACGGACCGC TCTCCCAAGTTCGTTTGGGAGTGCGAAAAGGGGTAG
  • Download Fasta

  • Fasta :-

    MKGPTLVLLAWALLCLCRGGGGVAIVRSGSSVSSGRSGGSARSVSRVSRIQSVNRVHRAN RVRPRRGFVPGGGDSQGSCAKQRRPRRPKLRRNHLHSTSAGEGFSNTVHHDVKKNTKNYS EDGPPASFHRYSENMKTRKNVHPSIRITQFDRTFMKCKEGYNRRYSHLKDSELFGSFRFV GRQKKGITSPRYYLPKYVERPNYHRTGTPVYVPYGSGGQRSGGQMSGSQGSADQRSDFNE RGKSPHPYGNVKREEEIETIRSNCQFARELMDDVSYIICEGVTTNDLDIYILNKCINNGY YPSPLNYHLFPKSSCISINEILCHGIPDNNILYENDIVKVDISVFKDGFHADMCESFLVP KLTKNEKKKKKKFYDFIYLNDKLRTRHTKFILKYHFDLTTNKVVKTGKHCSIKRIRYDPP NSKDRPTEQHRSYDDNSNAVMSSGDLGGNAPFPGGDYHNAADGGALPGEDLDELEQFHRQ YDEQVIYDKQQSSRTYEDLQSYLYRQSRGPPSDHGNRSDHNRFAFFDKRKPGVDELKRLM REKNLDLIRTAHECTMEAIRVCKPGVPFSAIGEAIESHLERKNKGHLRYAVVPHLCGHNI GRNFHEEPFIMHTRNDDDRLLCENLVFTIEPIISERPCDFIMWPDNWTLSNARYFFSAQF EHTIVVRKDGAEVLTGKTDRSPKFVWECEKG

  • title: active site
  • coordinates: H324,D341,D352,H598,E630,E661
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_093540166 SNRRYSHLKD0.993unspPVX_093540166 SNRRYSHLKD0.993unspPVX_093540166 SNRRYSHLKD0.993unspPVX_093540432 SEQHRSYDDN0.994unspPVX_09354048 SVSRVSRIQS0.996unspPVX_09354097 SNHLHSTSAG0.993unsp
PVX_093540      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India