PVX_097905 | rhomboid protease ROM4, putative

UniProt_ID: A5KAZ7

Computed_GO_Component_IDs: GO:0016021
Computed_GO_Components: integral component of membrane
Computed_GO_Function_IDs: GO:0004252
Computed_GO_Functions: serine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0006508
Computed_GO_Processes: proteolysis
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	PVX_097905	OTHER	0.999996	0.000003	0.000001

No Results

Fasta :-
>PVX_097905 MLSDYRVNKGALPPSEKLAKNADSSDRGEGPSGNNEDSDEESDLSVSVGRGGGTRPRGDK AGPAAAATGGTAATSGTATTRGTAAISATALSAAPRGSAASHGRKGPNDVKILVTSDEPL HTLPSGAVGRRAPLNPFSSPMLGKYRRKNRNAKMKVKDPRLNNNPLVGRLIVCISSTAIL FWVFFAEMIFNYNTFNGRCISKVLYPIYTETVVKKREPFFVFLGYGACEYNLEESAFDRH FIGTSASDKGWPTNKVEENPDGRGESSWDSVNTRVYNQLGGLNTNYIRNYGELYRLFWSV YLHGGFMHIIFNVICQIQILWMIEPDWGFLRTMMLFFTSGVTGNLLSAVCDPCGVTIGSS GALYGLIGALFTYYIEYWKTIPRPCCVLIFMVIVIIFGIFIGMFGYTDNYAHMGGCLGGI LYGFATITTVSAADKCTLGERMLTSPPFSWFLSSETKELINAKAREKKIRGENYRKKQIA NKVHKEDAFHVVMSLMKNRINEDGRPPCKMKLREWVVRITAASALIILWIVLFVYLLNET AYKSYTPMGQIKFTGVHTCFCCEVAKEKFPFISVANFYWCFTNEEATKYYCGK
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_097905.fa Sequence name : PVX_097905 Sequence length : 593 VALUES OF COMPUTED PARAMETERS Coef20 : 3.486 CoefTot : 0.234 ChDiff : 16 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.953 3.429 0.812 1.102 MesoH : 1.180 1.349 0.194 0.572 MuHd_075 : 6.664 12.914 2.711 1.874 MuHd_095 : 22.371 13.043 7.612 3.778 MuHd_100 : 21.763 11.934 6.108 4.461 MuHd_105 : 22.205 12.814 4.961 5.018 Hmax_075 : -1.925 5.400 -2.594 1.803 Hmax_095 : 9.000 6.200 1.082 3.060 Hmax_100 : -0.400 3.900 -1.102 2.340 Hmax_105 : -2.800 3.100 -2.725 1.900 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9906 0.0094 DFMC : 0.9950 0.0050

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 593 PVX_097905 MLSDYRVNKGALPPSEKLAKNADSSDRGEGPSGNNEDSDEESDLSVSVGRGGGTRPRGDKAGPAAAATGGTAATSGTATT 80 RGTAAISATALSAAPRGSAASHGRKGPNDVKILVTSDEPLHTLPSGAVGRRAPLNPFSSPMLGKYRRKNRNAKMKVKDPR 160 LNNNPLVGRLIVCISSTAILFWVFFAEMIFNYNTFNGRCISKVLYPIYTETVVKKREPFFVFLGYGACEYNLEESAFDRH 240 FIGTSASDKGWPTNKVEENPDGRGESSWDSVNTRVYNQLGGLNTNYIRNYGELYRLFWSVYLHGGFMHIIFNVICQIQIL 320 WMIEPDWGFLRTMMLFFTSGVTGNLLSAVCDPCGVTIGSSGALYGLIGALFTYYIEYWKTIPRPCCVLIFMVIVIIFGIF 400 IGMFGYTDNYAHMGGCLGGILYGFATITTVSAADKCTLGERMLTSPPFSWFLSSETKELINAKAREKKIRGENYRKKQIA 480 NKVHKEDAFHVVMSLMKNRINEDGRPPCKMKLREWVVRITAASALIILWIVLFVYLLNETAYKSYTPMGQIKFTGVHTCF 560 CCEVAKEKFPFISVANFYWCFTNEEATKYYCGK 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_097905 6 -MLSDYR|VN 0.070 . PVX_097905 9 SDYRVNK|GA 0.134 . PVX_097905 17 ALPPSEK|LA 0.061 . PVX_097905 20 PSEKLAK|NA 0.080 . PVX_097905 27 NADSSDR|GE 0.120 . PVX_097905 50 LSVSVGR|GG 0.115 . PVX_097905 55 GRGGGTR|PR 0.101 . PVX_097905 57 GGGTRPR|GD 0.115 . PVX_097905 60 TRPRGDK|AG 0.134 . PVX_097905 81 SGTATTR|GT 0.104 . PVX_097905 96 ALSAAPR|GS 0.121 . PVX_097905 104 SAASHGR|KG 0.084 . PVX_097905 105 AASHGRK|GP 0.096 . PVX_097905 111 KGPNDVK|IL 0.057 . PVX_097905 130 PSGAVGR|RA 0.094 . PVX_097905 131 SGAVGRR|AP 0.115 . PVX_097905 144 SSPMLGK|YR 0.075 . PVX_097905 146 PMLGKYR|RK 0.078 . PVX_097905 147 MLGKYRR|KN 0.138 . PVX_097905 148 LGKYRRK|NR 0.082 . PVX_097905 150 KYRRKNR|NA 0.436 . PVX_097905 153 RKNRNAK|MK 0.161 . PVX_097905 155 NRNAKMK|VK 0.095 . PVX_097905 157 NAKMKVK|DP 0.068 . PVX_097905 160 MKVKDPR|LN 0.100 . PVX_097905 169 NNPLVGR|LI 0.076 . PVX_097905 198 YNTFNGR|CI 0.110 . PVX_097905 202 NGRCISK|VL 0.066 . PVX_097905 214 YTETVVK|KR 0.059 . PVX_097905 215 TETVVKK|RE 0.079 . PVX_097905 216 ETVVKKR|EP 0.158 . PVX_097905 239 EESAFDR|HF 0.100 . PVX_097905 249 GTSASDK|GW 0.077 . PVX_097905 255 KGWPTNK|VE 0.056 . PVX_097905 263 EENPDGR|GE 0.083 . PVX_097905 274 WDSVNTR|VY 0.106 . PVX_097905 288 LNTNYIR|NY 0.084 . PVX_097905 295 NYGELYR|LF 0.076 . PVX_097905 331 PDWGFLR|TM 0.074 . PVX_097905 379 YYIEYWK|TI 0.054 . PVX_097905 383 YWKTIPR|PC 0.088 . PVX_097905 435 TVSAADK|CT 0.076 . PVX_097905 441 KCTLGER|ML 0.071 . PVX_097905 457 FLSSETK|EL 0.068 . PVX_097905 463 KELINAK|AR 0.074 . PVX_097905 465 LINAKAR|EK 0.101 . PVX_097905 467 NAKAREK|KI 0.063 . PVX_097905 468 AKAREKK|IR 0.385 . PVX_097905 470 AREKKIR|GE 0.133 . PVX_097905 475 IRGENYR|KK 0.104 . PVX_097905 476 RGENYRK|KQ 0.072 . PVX_097905 477 GENYRKK|QI 0.159 . PVX_097905 482 KKQIANK|VH 0.059 . PVX_097905 485 IANKVHK|ED 0.070 . PVX_097905 497 VVMSLMK|NR 0.055 . PVX_097905 499 MSLMKNR|IN 0.139 . PVX_097905 505 RINEDGR|PP 0.088 . PVX_097905 509 DGRPPCK|MK 0.058 . PVX_097905 511 RPPCKMK|LR 0.077 . PVX_097905 513 PCKMKLR|EW 0.090 . PVX_097905 518 LREWVVR|IT 0.112 . PVX_097905 543 LNETAYK|SY 0.083 . PVX_097905 552 TPMGQIK|FT 0.098 . PVX_097905 566 FCCEVAK|EK 0.066 . PVX_097905 568 CEVAKEK|FP 0.070 . PVX_097905 588 TNEEATK|YY 0.074 . PVX_097905 593 TKYYCGK|-- 0.080 . ____________________________^_________________

Fasta :-
>PVX_097905 ATGCTGAGTGATTACCGAGTGAACAAGGGGGCGCTCCCGCCAAGCGAGAAGCTGGCGAAG AATGCGGATTCGTCCGACCGGGGGGAGGGGCCCAGTGGGAACAACGAAGACAGCGACGAG GAGAGCGACCTGAGCGTGAGCGTGGGACGGGGCGGCGGCACTCGACCGAGAGGGGACAAA GCGGGGCCGGCGGCGGCGGCAACTGGAGGAACCGCCGCTACCAGTGGAACCGCCACTACC CGTGGAACCGCCGCTATAAGCGCAACCGCCTTAAGCGCCGCCCCCCGCGGGAGCGCCGCT TCGCATGGAAGGAAAGGCCCCAACGACGTAAAAATTTTAGTGACGAGCGATGAGCCCCTG CACACGCTGCCATCAGGTGCCGTGGGGAGGAGGGCTCCGCTGAACCCGTTTTCATCCCCC ATGCTTGGAAAGTACAGGAGAAAAAACAGAAACGCAAAAATGAAGGTGAAAGACCCAAGA CTTAACAATAACCCATTGGTAGGAAGGTTAATCGTGTGCATATCCTCCACGGCCATCCTC TTCTGGGTCTTCTTCGCCGAAATGATTTTCAATTACAATACATTTAATGGCAGATGTATA TCGAAGGTACTCTACCCAATCTACACAGAAACGGTGGTGAAGAAGAGAGAGCCTTTTTTT GTGTTCCTGGGTTATGGAGCATGCGAATATAACTTAGAAGAGTCTGCCTTCGATAGGCAC TTCATCGGAACGAGTGCATCCGACAAAGGATGGCCCACAAATAAAGTTGAAGAAAATCCA GATGGAAGAGGAGAGTCAAGTTGGGACAGTGTAAACACACGTGTGTATAATCAGTTAGGA GGACTTAACACAAATTACATACGAAATTATGGAGAGTTATATCGTCTTTTTTGGTCAGTC TATCTACATGGAGGGTTCATGCACATCATATTTAATGTAATCTGCCAGATACAAATCCTC TGGATGATTGAACCCGACTGGGGGTTTCTACGAACGATGATGCTGTTTTTTACATCTGGG GTGACAGGCAATTTGTTATCTGCCGTATGTGACCCATGTGGTGTAACTATCGGGTCGTCA GGTGCACTATATGGATTGATAGGAGCTCTCTTCACCTATTACATAGAATACTGGAAGACC ATTCCGAGACCCTGCTGCGTCTTGATCTTCATGGTTATTGTAATCATTTTTGGGATTTTC ATTGGTATGTTTGGATACACAGATAATTATGCCCACATGGGTGGTTGCTTGGGGGGCATC CTCTATGGCTTCGCCACCATTACGACTGTCTCCGCAGCGGATAAGTGCACCCTGGGGGAG CGCATGCTCACGTCTCCTCCCTTCTCCTGGTTCCTGTCTTCCGAAACGAAGGAACTCATT AACGCAAAAGCAAGGGAGAAAAAAATAAGAGGAGAAAATTATAGGAAAAAGCAAATTGCT AATAAGGTACATAAGGAGGACGCTTTCCACGTTGTGATGTCTCTCATGAAGAACAGAATC AATGAGGACGGAAGACCTCCATGTAAAATGAAACTGCGTGAGTGGGTCGTCCGGATCACT GCCGCGTCGGCGCTCATCATCCTTTGGATAGTGCTGTTCGTCTACCTGCTGAATGAAACC GCCTACAAATCCTACACCCCCATGGGCCAAATCAAGTTCACCGGCGTCCACACCTGCTTC TGCTGCGAGGTCGCCAAGGAGAAGTTCCCCTTCATCAGCGTCGCCAACTTTTACTGGTGC TTCACCAACGAGGAGGCCACCAAGTACTACTGCGGGAAGTGA
Download Fasta

Fasta :-

MLSDYRVNKGALPPSEKLAKNADSSDRGEGPSGNNEDSDEESDLSVSVGRGGGTRPRGDK AGPAAAATGGTAATSGTATTRGTAAISATALSAAPRGSAASHGRKGPNDVKILVTSDEPL HTLPSGAVGRRAPLNPFSSPMLGKYRRKNRNAKMKVKDPRLNNNPLVGRLIVCISSTAIL FWVFFAEMIFNYNTFNGRCISKVLYPIYTETVVKKREPFFVFLGYGACEYNLEESAFDRH FIGTSASDKGWPTNKVEENPDGRGESSWDSVNTRVYNQLGGLNTNYIRNYGELYRLFWSV YLHGGFMHIIFNVICQIQILWMIEPDWGFLRTMMLFFTSGVTGNLLSAVCDPCGVTIGSS GALYGLIGALFTYYIEYWKTIPRPCCVLIFMVIVIIFGIFIGMFGYTDNYAHMGGCLGGI LYGFATITTVSAADKCTLGERMLTSPPFSWFLSSETKELINAKAREKKIRGENYRKKQIA NKVHKEDAFHVVMSLMKNRINEDGRPPCKMKLREWVVRITAASALIILWIVLFVYLLNET AYKSYTPMGQIKFTGVHTCFCCEVAKEKFPFISVANFYWCFTNEEATKYYCGK

Rhomboid-like

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	PVX_097905	T	80	0.592	0.279	PVX_097905	T	77	0.588	0.030	PVX_097905	T	71	0.579	0.038	PVX_097905	T	68	0.578	0.215	PVX_097905	T	83	0.569	0.050	PVX_097905	T	74	0.566	0.306	PVX_097905	T	79	0.562	0.035	PVX_097905	T	89	0.539	0.143

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	PVX_097905	T	80	0.592	0.279	PVX_097905	T	77	0.588	0.030	PVX_097905	T	71	0.579	0.038	PVX_097905	T	68	0.578	0.215	PVX_097905	T	83	0.569	0.050	PVX_097905	T	74	0.566	0.306	PVX_097905	T	79	0.562	0.035	PVX_097905	T	89	0.539	0.143

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	PVX_097905	38 S	NNEDSDEES	0.997	unsp	PVX_097905	266 S	GRGESSWDS	0.994	unsp

PVX_097905

PVX_097905 | rhomboid protease ROM4, putative

ID's

UniProt_ID: A5KAZ7

GEO Functions

Computed_GO_Component_IDs: GO:0016021

Computed_GO_Components: integral component of membrane

Computed_GO_Function_IDs: GO:0004252

Computed_GO_Functions: serine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0006508

Computed_GO_Processes: proteolysis

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Rhomboid-like

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India