PVX_099335 | eukaryotic translation initiation factor 3 subunit 5, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PVX_099335OTHER0.9965660.0003200.003114
No Results

  • Fasta :-

    >PVX_099335 MSVNRYNFKALSSLLKDKTPQHFDILPHTSIKCIVHPSVIFTILDAYLRRDEDQTHVIGT LMGSVIDANLIEISDCFVDKHSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGS ELSELSCAVHGWFKEHNSISKFYPHSPLNEPIHLLVDAALESGFLNIKAYVQLPITLVKE YFVHFHEIQTELLPSNVERAEVLQYQEKGLPGKDKDSHMHGNKNSVPPNDMNEMSLKKLL IMLKQCKSYVQDVIDKKKKGNLDVGRYLHKVFSNDSFSTLEKFDSINESILQDNLMISYL SNLAHLQFLIAEKLNASSLQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_099335.fa Sequence name : PVX_099335 Sequence length : 320 VALUES OF COMPUTED PARAMETERS Coef20 : 4.088 CoefTot : 0.327 ChDiff : -6 ZoneTo : 16 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.465 0.063 0.563 MesoH : -0.415 0.308 -0.418 0.259 MuHd_075 : 10.977 7.357 3.432 2.094 MuHd_095 : 25.068 18.413 6.549 6.697 MuHd_100 : 18.044 15.134 4.284 5.656 MuHd_105 : 11.265 10.979 2.368 4.328 Hmax_075 : -2.800 6.417 -1.734 1.423 Hmax_095 : 2.900 10.000 -1.701 2.760 Hmax_100 : -0.300 4.700 -1.316 1.820 Hmax_105 : -2.538 4.550 -3.185 1.820 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7832 0.2168 DFMC : 0.7680 0.2320
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 320 PVX_099335 MSVNRYNFKALSSLLKDKTPQHFDILPHTSIKCIVHPSVIFTILDAYLRRDEDQTHVIGTLMGSVIDANLIEISDCFVDK 80 HSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGSELSELSCAVHGWFKEHNSISKFYPHSPLNEPIHLLVDAAL 160 ESGFLNIKAYVQLPITLVKEYFVHFHEIQTELLPSNVERAEVLQYQEKGLPGKDKDSHMHGNKNSVPPNDMNEMSLKKLL 240 IMLKQCKSYVQDVIDKKKKGNLDVGRYLHKVFSNDSFSTLEKFDSINESILQDNLMISYLSNLAHLQFLIAEKLNASSLQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_099335 5 --MSVNR|YN 0.127 . PVX_099335 9 VNRYNFK|AL 0.078 . PVX_099335 16 ALSSLLK|DK 0.084 . PVX_099335 18 SSLLKDK|TP 0.059 . PVX_099335 32 LPHTSIK|CI 0.066 . PVX_099335 49 ILDAYLR|RD 0.082 . PVX_099335 50 LDAYLRR|DE 0.192 . PVX_099335 80 SDCFVDK|HS 0.070 . PVX_099335 93 GFLQIIK|DH 0.063 . PVX_099335 103 ETMYELK|QK 0.065 . PVX_099335 105 MYELKQK|IR 0.060 . PVX_099335 107 ELKQKIR|PR 0.119 . PVX_099335 109 KQKIRPR|DQ 0.125 . PVX_099335 134 AVHGWFK|EH 0.057 . PVX_099335 141 EHNSISK|FY 0.068 . PVX_099335 168 SGFLNIK|AY 0.059 . PVX_099335 179 LPITLVK|EY 0.069 . PVX_099335 199 LPSNVER|AE 0.107 . PVX_099335 208 VLQYQEK|GL 0.070 . PVX_099335 213 EKGLPGK|DK 0.083 . PVX_099335 215 GLPGKDK|DS 0.089 . PVX_099335 223 SHMHGNK|NS 0.060 . PVX_099335 237 MNEMSLK|KL 0.071 . PVX_099335 238 NEMSLKK|LL 0.076 . PVX_099335 244 KLLIMLK|QC 0.058 . PVX_099335 247 IMLKQCK|SY 0.076 . PVX_099335 256 VQDVIDK|KK 0.058 . PVX_099335 257 QDVIDKK|KK 0.087 . PVX_099335 258 DVIDKKK|KG 0.075 . PVX_099335 259 VIDKKKK|GN 0.124 . PVX_099335 266 GNLDVGR|YL 0.140 . PVX_099335 270 VGRYLHK|VF 0.061 . PVX_099335 282 SFSTLEK|FD 0.083 . PVX_099335 313 QFLIAEK|LN 0.058 . ____________________________^_________________

  • Fasta :-

    >PVX_099335 ATGAGCGTCAACCGTTACAACTTCAAAGCGCTGAGCTCCCTTTTGAAGGACAAAACGCCA CAGCACTTTGACATCCTGCCGCATACGAGCATCAAGTGCATAGTGCATCCCTCTGTGATA TTCACAATTCTGGATGCCTACCTGAGAAGGGATGAAGACCAAACGCATGTCATTGGAACC CTCATGGGGTCCGTCATCGACGCGAACCTCATCGAAATTTCGGACTGCTTCGTCGATAAG CATTCGCTTAATGAAGGAGGATTCCTCCAAATCATTAAGGACCACCACGAAACGATGTAC GAGCTGAAGCAGAAGATTCGCCCCAGAGACCAGGTAGTCGGTTGGTTCTGCTCCGGTTCC GAGTTATCCGAGCTCTCCTGCGCTGTTCATGGCTGGTTTAAAGAGCACAACTCCATTTCG AAGTTTTACCCTCACTCTCCTCTAAACGAACCGATACACCTGCTAGTGGACGCCGCACTA GAAAGTGGCTTCCTTAACATCAAGGCCTACGTACAACTACCCATCACGCTGGTAAAGGAA TACTTTGTTCACTTTCACGAAATTCAAACGGAGTTACTCCCCAGCAATGTGGAAAGAGCA GAGGTGTTACAGTACCAGGAGAAAGGCCTACCAGGCAAGGACAAAGACAGTCATATGCAT GGCAACAAAAATAGTGTCCCTCCAAATGATATGAATGAAATGTCTTTAAAAAAATTACTA ATTATGTTAAAGCAGTGCAAATCGTATGTACAGGATGTTATTGACAAAAAGAAGAAGGGG AACCTGGACGTTGGCAGATACCTACATAAGGTCTTCTCCAATGATTCCTTTTCAACTTTG GAAAAATTTGACTCCATTAATGAGAGCATCTTGCAAGACAACTTGATGATTTCGTACCTG TCGAATCTCGCTCATTTGCAGTTCCTCATAGCTGAGAAGTTAAACGCGTCGTCACTGCAG TGA
  • Download Fasta

  • Fasta :-

    MSVNRYNFKALSSLLKDKTPQHFDILPHTSIKCIVHPSVIFTILDAYLRRDEDQTHVIGT LMGSVIDANLIEISDCFVDKHSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGS ELSELSCAVHGWFKEHNSISKFYPHSPLNEPIHLLVDAALESGFLNIKAYVQLPITLVKE YFVHFHEIQTELLPSNVERAEVLQYQEKGLPGKDKDSHMHGNKNSVPPNDMNEMSLKKLL IMLKQCKSYVQDVIDKKKKGNLDVGRYLHKVFSNDSFSTLEKFDSINESILQDNLMISYL SNLAHLQFLIAEKLNASSLQ

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PVX_099335      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India