PVX_111195 | tRNA N6-adenosine threonylcarbamoyltransferase, putative

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_IDPredictionOTHERSPmTPCS_Position
PVX_111195OTHER0.9993010.0005460.000153
No Results

  • Fasta :-

    >PVX_111195 MVSDCISGGGTTLAQPPKYILGLEGSANKLGVSIINSNFEILVNMRRTYISEIGCGFIPR QINAHHKYYIIEMIKDCLTKLKIKITDVHLICYTKGPGIGSALYIAYNISKFFSLLFNIP VIGVNHCIAHIEMGIFITKLYHPIILYVSGSNTQIIYFNDHKKRYEIIGETLDIAIGNVI DRSARILRISNSPSPGYNVEILARKKYLLNLEKKKKKKNAPIGGSFAGGEPHGGSAANEP NTPRTHDKPVRADPCDYTELLFFPYTIKGMDISFSGYDYYVSKYFSRYLTKRGKKGKGGE NAPKRKKRHEGGEANGGGRSDADSVNGEEDDHADDAANRGNPIAGAANDGSTQQFPQPNL SIRAGVQGSSYYEENVVCSSGGKRNYGEGEHYAEEDDCAIETESDFFDSSEEQPSSGSSE EQPRSRSSEEKARSRSTEEQPRNESSEEKPPSGGSLTDEEKRKIQICYSLQHHIFSMLIE ITERAIAFTNSKEVIIVGGVGCNVFLQNMMKKMAKQKNIKIGFMDHSYCVDNGAMIAYTG YLEFANTKNREIYGFDNISIHQRYRTDDVLVTWR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_111195.fa Sequence name : PVX_111195 Sequence length : 574 VALUES OF COMPUTED PARAMETERS Coef20 : 3.308 CoefTot : -2.087 ChDiff : 0 ZoneTo : 39 KR : 2 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.294 1.612 0.156 0.644 MesoH : 0.479 0.901 -0.103 0.450 MuHd_075 : 28.514 17.424 9.050 5.648 MuHd_095 : 23.508 21.932 8.406 6.327 MuHd_100 : 28.002 22.639 9.231 7.122 MuHd_105 : 26.447 23.610 8.441 6.948 Hmax_075 : 11.100 19.900 4.200 6.700 Hmax_095 : 13.650 14.613 4.255 5.574 Hmax_100 : 14.200 16.400 3.997 6.220 Hmax_105 : 11.200 12.250 1.884 4.900 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9753 0.0247 DFMC : 0.9740 0.0260
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 574 PVX_111195 MVSDCISGGGTTLAQPPKYILGLEGSANKLGVSIINSNFEILVNMRRTYISEIGCGFIPRQINAHHKYYIIEMIKDCLTK 80 LKIKITDVHLICYTKGPGIGSALYIAYNISKFFSLLFNIPVIGVNHCIAHIEMGIFITKLYHPIILYVSGSNTQIIYFND 160 HKKRYEIIGETLDIAIGNVIDRSARILRISNSPSPGYNVEILARKKYLLNLEKKKKKKNAPIGGSFAGGEPHGGSAANEP 240 NTPRTHDKPVRADPCDYTELLFFPYTIKGMDISFSGYDYYVSKYFSRYLTKRGKKGKGGENAPKRKKRHEGGEANGGGRS 320 DADSVNGEEDDHADDAANRGNPIAGAANDGSTQQFPQPNLSIRAGVQGSSYYEENVVCSSGGKRNYGEGEHYAEEDDCAI 400 ETESDFFDSSEEQPSSGSSEEQPRSRSSEEKARSRSTEEQPRNESSEEKPPSGGSLTDEEKRKIQICYSLQHHIFSMLIE 480 ITERAIAFTNSKEVIIVGGVGCNVFLQNMMKKMAKQKNIKIGFMDHSYCVDNGAMIAYTGYLEFANTKNREIYGFDNISI 560 HQRYRTDDVLVTWR 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...................................................................P............ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .............. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PVX_111195 18 TLAQPPK|YI 0.089 . PVX_111195 29 LEGSANK|LG 0.054 . PVX_111195 46 EILVNMR|RT 0.085 . PVX_111195 47 ILVNMRR|TY 0.114 . PVX_111195 60 GCGFIPR|QI 0.111 . PVX_111195 67 QINAHHK|YY 0.078 . PVX_111195 75 YIIEMIK|DC 0.065 . PVX_111195 80 IKDCLTK|LK 0.066 . PVX_111195 82 DCLTKLK|IK 0.062 . PVX_111195 84 LTKLKIK|IT 0.069 . PVX_111195 95 HLICYTK|GP 0.066 . PVX_111195 111 IAYNISK|FF 0.069 . PVX_111195 139 MGIFITK|LY 0.066 . PVX_111195 162 IYFNDHK|KR 0.059 . PVX_111195 163 YFNDHKK|RY 0.149 . PVX_111195 164 FNDHKKR|YE 0.292 . PVX_111195 182 IGNVIDR|SA 0.187 . PVX_111195 185 VIDRSAR|IL 0.258 . PVX_111195 188 RSARILR|IS 0.188 . PVX_111195 204 NVEILAR|KK 0.068 . PVX_111195 205 VEILARK|KY 0.063 . PVX_111195 206 EILARKK|YL 0.082 . PVX_111195 213 YLLNLEK|KK 0.054 . PVX_111195 214 LLNLEKK|KK 0.098 . PVX_111195 215 LNLEKKK|KK 0.089 . PVX_111195 216 NLEKKKK|KK 0.105 . PVX_111195 217 LEKKKKK|KN 0.137 . PVX_111195 218 EKKKKKK|NA 0.175 . PVX_111195 244 NEPNTPR|TH 0.080 . PVX_111195 248 TPRTHDK|PV 0.113 . PVX_111195 251 THDKPVR|AD 0.082 . PVX_111195 268 FFPYTIK|GM 0.063 . PVX_111195 283 YDYYVSK|YF 0.078 . PVX_111195 287 VSKYFSR|YL 0.109 . PVX_111195 291 FSRYLTK|RG 0.066 . PVX_111195 292 SRYLTKR|GK 0.289 . PVX_111195 294 YLTKRGK|KG 0.065 . PVX_111195 295 LTKRGKK|GK 0.363 . PVX_111195 297 KRGKKGK|GG 0.095 . PVX_111195 304 GGENAPK|RK 0.067 . PVX_111195 305 GENAPKR|KK 0.237 . PVX_111195 306 ENAPKRK|KR 0.116 . PVX_111195 307 NAPKRKK|RH 0.113 . PVX_111195 308 APKRKKR|HE 0.791 *ProP* PVX_111195 319 EANGGGR|SD 0.137 . PVX_111195 339 ADDAANR|GN 0.085 . PVX_111195 363 QPNLSIR|AG 0.105 . PVX_111195 383 VCSSGGK|RN 0.064 . PVX_111195 384 CSSGGKR|NY 0.397 . PVX_111195 424 SSEEQPR|SR 0.181 . PVX_111195 426 EEQPRSR|SS 0.153 . PVX_111195 431 SRSSEEK|AR 0.091 . PVX_111195 433 SSEEKAR|SR 0.209 . PVX_111195 435 EEKARSR|ST 0.164 . PVX_111195 442 STEEQPR|NE 0.092 . PVX_111195 449 NESSEEK|PP 0.071 . PVX_111195 461 SLTDEEK|RK 0.059 . PVX_111195 462 LTDEEKR|KI 0.126 . PVX_111195 463 TDEEKRK|IQ 0.083 . PVX_111195 484 LIEITER|AI 0.074 . PVX_111195 492 IAFTNSK|EV 0.077 . PVX_111195 511 FLQNMMK|KM 0.064 . PVX_111195 512 LQNMMKK|MA 0.154 . PVX_111195 515 MMKKMAK|QK 0.079 . PVX_111195 517 KKMAKQK|NI 0.096 . PVX_111195 520 AKQKNIK|IG 0.059 . PVX_111195 548 LEFANTK|NR 0.061 . PVX_111195 550 FANTKNR|EI 0.100 . PVX_111195 563 NISIHQR|YR 0.109 . PVX_111195 565 SIHQRYR|TD 0.100 . PVX_111195 574 DVLVTWR|-- 0.080 . ____________________________^_________________

  • Fasta :-

    >PVX_111195 ACAAATACTTCACAAATACTTCACAAATACTTCACAAATACTTCACAAATACTTCACAAA TATTTCACAAATACTTCACAAACATTTCGCGCACATTTTCACATTTGCTATGTGCCTGTA CATTTTGGTTGCATGTGGGAGCGCGAAAAAAGGGGCGACCTCTTCGCCGAGGGACTTTAC CCCTTCTATGCGCATCACCGGAACGGCTAGAACTTTCTCCCTTTCGCTCGCCTAAACCGG CGGGGCGCTTCCCGAGCAAATGGACCCCTTCCTTTGGAGAGTCCCTCCGCTGGGCAGCAA CAAAACAGCGGTTCGTGCGTAGGAATGGCTTTCTTTTTTGCAAGGGGCAAAACGGTTGCT AGCCACCCCGGTTTTTCACCTCCCCCTCTCTATGACCAAAGGGGGGGGCACCTCTCTATT TCGATACACCTGAGTTGGGTACCTTCACATCTTTTTTTTTTTTTGAGAAGAACGAATTTG TTAATTTGTGTAGGGTGACCTTCGGAAGAGAAGCGGGTATATCTACCCGCCGCTCACTCC GTTGTTGGCGCCGCCCCTCCACCATTTTTTCCCCCCCTTTTGCAACATGGTAAGTGACTG CATCTCAGGGGGGGGCACCACCCTGGCGCAACCACCCAAGTACATCCTCGGGCTGGAGGG AAGTGCAAACAAATTAGGGGTCAGCATAATAAACAGCAACTTTGAAATTCTGGTGAACAT GAGGAGAACGTATATCTCCGAAATAGGCTGCGGATTTATCCCCAGACAAATTAACGCTCA CCATAAATACTACATCATCGAAATGATTAAGGACTGTCTCACCAAGCTGAAGATAAAGAT AACGGATGTACATTTAATATGCTATACGAAAGGGCCAGGCATTGGCTCCGCCCTCTACAT TGCCTACAACATAAGCAAATTCTTTTCCCTCCTCTTTAACATCCCCGTGATTGGAGTCAA CCACTGCATAGCCCACATCGAAATGGGCATCTTCATAACAAAGCTTTATCACCCCATCAT TTTATACGTCAGCGGAAGCAACACACAAATTATTTATTTTAATGATCACAAGAAGAGGTA CGAAATTATAGGAGAGACTTTGGACATTGCCATTGGGAATGTCATCGATCGGTCCGCCAG GATTCTCCGAATTTCAAATTCGCCTTCTCCGGGGTATAACGTGGAAATATTGGCCAGGAA GAAGTATCTGCTAAATTTGGAGAAAAAAAAAAAAAAAAAAAACGCCCCAATAGGTGGGTC ATTTGCGGGGGGGGAACCGCATGGTGGCAGCGCTGCAAATGAGCCCAACACGCCCAGAAC GCACGACAAACCAGTGAGGGCGGACCCCTGTGACTACACCGAGTTGCTCTTCTTCCCCTA CACCATAAAGGGGATGGACATCTCCTTCAGCGGCTACGACTACTACGTGAGCAAATATTT CTCCAGGTATTTAACCAAGCGGGGCAAAAAGGGCAAGGGCGGAGAGAACGCCCCAAAGAG GAAGAAGCGGCACGAGGGGGGAGAAGCAAACGGGGGGGGCAGAAGCGATGCGGACAGCGT CAACGGTGAGGAAGATGACCATGCAGATGACGCCGCAAACAGGGGAAACCCTATCGCAGG CGCCGCAAATGATGGCTCCACGCAGCAATTTCCGCAGCCCAACTTGAGCATTCGCGCGGG CGTGCAGGGCAGCTCCTACTACGAGGAGAACGTCGTGTGCAGCAGCGGGGGGAAGAGGAA CTACGGGGAGGGCGAGCACTACGCGGAGGAGGACGACTGCGCCATCGAGACGGAGAGCGA TTTTTTTGACTCCAGCGAGGAGCAGCCCAGCAGTGGGAGCAGCGAGGAGCAGCCGCGCAG TAGAAGCAGCGAGGAGAAGGCGCGCAGTAGAAGCACCGAAGAGCAACCACGCAATGAAAG CAGCGAGGAGAAACCGCCCAGCGGCGGCAGCCTGACGGACGAGGAAAAGCGGAAAATACA AATCTGCTACAGCCTGCAGCACCACATCTTCAGCATGCTCATCGAAATCACCGAACGAGC GATCGCCTTCACGAACAGCAAGGAGGTGATCATCGTGGGGGGAGTCGGCTGCAACGTCTT CCTCCAAAACATGATGAAGAAAATGGCAAAGCAGAAAAACATCAAAATTGGATTCATGGA CCACAGCTACTGCGTAGACAACGGCGCCATGATTGCCTACACGGGGTACCTGGAATTTGC GAACACCAAAAATAGGGAAATCTACGGCTTTGATAATATAAGTATCCACCAGAGGTACCG CACGGACGACGTGCTCGTGACGTGGAGGTAG
  • Download Fasta

  • Fasta :-

    MVSDCISGGGTTLAQPPKYILGLEGSANKLGVSIINSNFEILVNMRRTYISEIGCGFIPR QINAHHKYYIIEMIKDCLTKLKIKITDVHLICYTKGPGIGSALYIAYNISKFFSLLFNIP VIGVNHCIAHIEMGIFITKLYHPIILYVSGSNTQIIYFNDHKKRYEIIGETLDIAIGNVI DRSARILRISNSPSPGYNVEILARKKYLLNLEKKKKKKNAPIGGSFAGGEPHGGSAANEP NTPRTHDKPVRADPCDYTELLFFPYTIKGMDISFSGYDYYVSKYFSRYLTKRGKKGKGGE NAPKRKKRHEGGEANGGGRSDADSVNGEEDDHADDAANRGNPIAGAANDGSTQQFPQPNL SIRAGVQGSSYYEENVVCSSGGKRNYGEGEHYAEEDDCAIETESDFFDSSEEQPSSGSSE EQPRSRSSEEKARSRSTEEQPRNESSEEKPPSGGSLTDEEKRKIQICYSLQHHIFSMLIE ITERAIAFTNSKEVIIVGGVGCNVFLQNMMKKMAKQKNIKIGFMDHSYCVDNGAMIAYTG YLEFANTKNREIYGFDNISIHQRYRTDDVLVTWR

  • title: nucleotide binding site
  • coordinates: E24,G25,S26,A27,K29,G31,H126,V148,S149,G150,S151
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
PVX_111195T4370.6170.049PVX_111195S4270.5100.020PVX_111195S4250.5050.048
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
PVX_111195T4370.6170.049PVX_111195S4270.5100.020PVX_111195S4250.5050.048
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_111195419 SSSGSSEEQP0.995unspPVX_111195419 SSSGSSEEQP0.995unspPVX_111195419 SSSGSSEEQP0.995unspPVX_111195427 SPRSRSSEEK0.996unspPVX_111195428 SRSRSSEEKA0.998unspPVX_111195436 SARSRSTEEQ0.998unspPVX_111195445 SPRNESSEEK0.996unspPVX_111195455 SPSGGSLTDE0.991unspPVX_111195409 SDFFDSSEEQ0.995unspPVX_111195418 SPSSGSSEEQ0.995unsp
PVX_111195      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India