PVX_113585 | proteasome subunit alpha type-2, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_113585OTHER0.9993470.0000790.000574
No Results

  • Fasta :-

    >PVX_113585 MADGEYSFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGVIIATEKKSPNELIEEN SIYKIQQISEHIGIVYAGMPGDFRVLLKRARKEAIRYSLQYGNEILVKELVKEIASIVQE FTQTGGVRPFGLSLLICGIDAYGYHLYQIDPSGCYFNWLATCIGKDYQNNISFLEKRYSS DIEVEDAIHTAILTLKESYEGVMNEKNIEIGVACNDKPFKILTPNEIKDYLIEIE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_113585.fa Sequence name : PVX_113585 Sequence length : 235 VALUES OF COMPUTED PARAMETERS Coef20 : 3.733 CoefTot : 0.141 ChDiff : -7 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.865 1.176 0.129 0.576 MesoH : -0.443 0.331 -0.296 0.265 MuHd_075 : 12.456 2.667 3.042 1.246 MuHd_095 : 16.939 8.441 3.504 3.249 MuHd_100 : 11.572 6.693 2.679 2.488 MuHd_105 : 2.805 4.253 2.625 1.413 Hmax_075 : 8.313 2.000 -0.167 2.370 Hmax_095 : 11.500 3.762 0.023 2.958 Hmax_100 : 10.200 5.200 0.889 3.430 Hmax_105 : 8.867 2.100 0.027 2.438 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9191 0.0809 DFMC : 0.9300 0.0700
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 235 PVX_113585 MADGEYSFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGVIIATEKKSPNELIEENSIYKIQQISEHIGIVYAGMP 80 GDFRVLLKRARKEAIRYSLQYGNEILVKELVKEIASIVQEFTQTGGVRPFGLSLLICGIDAYGYHLYQIDPSGCYFNWLA 160 TCIGKDYQNNISFLEKRYSSDIEVEDAIHTAILTLKESYEGVMNEKNIEIGVACNDKPFKILTPNEIKDYLIEIE 240 ................................................................................ 80 ................................................................................ 160 ........................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_113585 18 TFSPTGK|LV 0.080 . PVX_113585 28 IEYALNR|VS 0.082 . PVX_113585 39 SPALGIR|AK 0.114 . PVX_113585 41 ALGIRAK|NG 0.062 . PVX_113585 50 VIIATEK|KS 0.058 . PVX_113585 51 IIATEKK|SP 0.119 . PVX_113585 64 EENSIYK|IQ 0.066 . PVX_113585 84 GMPGDFR|VL 0.065 . PVX_113585 88 DFRVLLK|RA 0.064 . PVX_113585 89 FRVLLKR|AR 0.182 . PVX_113585 91 VLLKRAR|KE 0.069 . PVX_113585 92 LLKRARK|EA 0.204 . PVX_113585 96 ARKEAIR|YS 0.106 . PVX_113585 108 GNEILVK|EL 0.068 . PVX_113585 112 LVKELVK|EI 0.064 . PVX_113585 128 TQTGGVR|PF 0.098 . PVX_113585 165 LATCIGK|DY 0.066 . PVX_113585 176 NISFLEK|RY 0.072 . PVX_113585 177 ISFLEKR|YS 0.338 . PVX_113585 196 TAILTLK|ES 0.071 . PVX_113585 206 EGVMNEK|NI 0.069 . PVX_113585 217 GVACNDK|PF 0.062 . PVX_113585 220 CNDKPFK|IL 0.067 . PVX_113585 228 LTPNEIK|DY 0.062 . ____________________________^_________________

  • Fasta :-

    >PVX_113585 ATGGCCGATGGGGAGTACAGCTTTTCCCTGACAACCTTCAGCCCCACGGGGAAGTTAGTT CAGATTGAATATGCCCTGAACAGGGTCTCCAGCAGTTCCCCCGCCTTAGGCATCCGAGCC AAGAACGGAGTCATCATCGCAACGGAGAAGAAGAGCCCAAATGAACTGATCGAAGAAAAC AGCATATACAAAATCCAGCAGATCAGCGAGCACATAGGAATTGTCTACGCGGGAATGCCT GGAGACTTCCGGGTGCTTCTGAAGCGTGCCCGTAAGGAAGCGATCAGGTACTCCCTACAG TATGGCAATGAAATTTTGGTGAAAGAACTTGTAAAAGAGATAGCTTCCATAGTACAGGAG TTCACCCAGACGGGTGGGGTGAGACCTTTTGGCTTGTCCCTCCTAATTTGCGGCATAGAT GCTTATGGGTACCACTTGTATCAAATTGATCCCTCTGGGTGTTACTTTAATTGGCTAGCT ACGTGCATAGGAAAGGACTACCAGAATAATATTTCCTTTTTGGAGAAGAGGTACAGCAGC GACATTGAGGTGGAGGACGCCATACACACAGCCATCCTCACCCTCAAGGAGAGCTACGAG GGGGTCATGAACGAAAAGAACATCGAAATTGGCGTGGCCTGCAACGACAAGCCCTTTAAA ATTCTCACCCCCAACGAGATTAAGGACTACCTCATCGAGATAGAGTGA
  • Download Fasta

  • Fasta :-

    MADGEYSFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGVIIATEKKSPNELIEEN SIYKIQQISEHIGIVYAGMPGDFRVLLKRARKEAIRYSLQYGNEILVKELVKEIASIVQE FTQTGGVRPFGLSLLICGIDAYGYHLYQIDPSGCYFNWLATCIGKDYQNNISFLEKRYSS DIEVEDAIHTAILTLKESYEGVMNEKNIEIGVACNDKPFKILTPNEIKDYLIEIE

  • title: active site
  • coordinates: S33,E49,K51,K64,K165
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_11358552 STEKKSPNEL0.994unspPVX_113585180 SKRYSSDIEV0.996unsp
PVX_113585      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India