PVX_117215 | ATP-dependent zinc metalloprotease FTSH, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_117215mTP0.3745260.0000850.625389CS pos: 36-37. RCF-SL. Pr: 0.5174
No Results

  • Fasta :-

    >PVX_117215 MLLLRNAVVVHLKRSHMLYVGNLANVKCILNNKRCFSLLKNERLDRLKREIRYKPNDNFL ILQFYKEANVHNPNEVIKHYESNNNIKNESITKEYIKALVYTNKLKYTNLDNIKYDSDPM LYRRLMDDSSHSNDVHNDRSGGYDTGNLHSDSGYANMAQSAHRMEYGDKKKGVHSEIYSL QIDPKKPLKVSVVDGSKKGMWGLLKSTIGFLILVAAASVYLEGVSQNVQKGIGVVNKKII PVENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIA RAIAGEANVPFLQASGSEFEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSN RDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDIK GRYEILKMYSSKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKAVDMNSI EQAFDRVVVGLQRKSPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLGVT WKIPISDKYSQKIRDVQSEIDILMGGLVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVMN YGVGINEENISMFLQDKKNISEEMKIKIDKSIQRILLDSYNRAKKVLNQHIDELHRVASA LVEYETLTSDEIKLAMQGKHDQIRKNRELKQKEFNLKDSRIS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_117215.fa Sequence name : PVX_117215 Sequence length : 702 VALUES OF COMPUTED PARAMETERS Coef20 : 4.577 CoefTot : -0.132 ChDiff : 15 ZoneTo : 41 KR : 7 DE : 0 CleavSite : 44 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.600 2.047 0.269 0.751 MesoH : -0.572 0.501 -0.397 0.245 MuHd_075 : 27.073 21.871 8.645 6.836 MuHd_095 : 21.578 16.216 5.484 5.541 MuHd_100 : 19.021 15.795 6.940 4.831 MuHd_105 : 26.771 16.158 8.738 6.291 Hmax_075 : 8.750 17.800 4.555 4.640 Hmax_095 : 9.887 15.313 1.060 5.232 Hmax_100 : 4.000 15.700 1.657 5.360 Hmax_105 : 4.000 9.683 1.657 3.780 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0582 0.9418 DFMC : 0.1216 0.8784 This protein is probably imported in mitochondria. f(Ser) = 0.0488 f(Arg) = 0.0732 CMi = 0.28289 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 702 PVX_117215 MLLLRNAVVVHLKRSHMLYVGNLANVKCILNNKRCFSLLKNERLDRLKREIRYKPNDNFLILQFYKEANVHNPNEVIKHY 80 ESNNNIKNESITKEYIKALVYTNKLKYTNLDNIKYDSDPMLYRRLMDDSSHSNDVHNDRSGGYDTGNLHSDSGYANMAQS 160 AHRMEYGDKKKGVHSEIYSLQIDPKKPLKVSVVDGSKKGMWGLLKSTIGFLILVAAASVYLEGVSQNVQKGIGVVNKKII 240 PVENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAIAGEANVPFLQASGSEFE 320 EMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSNRDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDK 400 ALVRPGRLDKTIVVPLPDIKGRYEILKMYSSKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKAVDMNSI 480 EQAFDRVVVGLQRKSPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLGVTWKIPISDKYSQKIRDVQSEI 560 DILMGGLVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVMNYGVGINEENISMFLQDKKNISEEMKIKIDKSIQRILLDSY 640 NRAKKVLNQHIDELHRVASALVEYETLTSDEIKLAMQGKHDQIRKNRELKQKEFNLKDSRIS 720 ................................................P............................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................P....................................... 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .............................................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ PVX_117215 5 --MLLLR|NA 0.072 . PVX_117215 13 AVVVHLK|RS 0.058 . PVX_117215 14 VVVHLKR|SH 0.188 . PVX_117215 27 GNLANVK|CI 0.057 . PVX_117215 33 KCILNNK|RC 0.058 . PVX_117215 34 CILNNKR|CF 0.120 . PVX_117215 40 RCFSLLK|NE 0.053 . PVX_117215 43 SLLKNER|LD 0.072 . PVX_117215 46 KNERLDR|LK 0.183 . PVX_117215 48 ERLDRLK|RE 0.057 . PVX_117215 49 RLDRLKR|EI 0.516 *ProP* PVX_117215 52 RLKREIR|YK 0.176 . PVX_117215 54 KREIRYK|PN 0.074 . PVX_117215 66 LILQFYK|EA 0.069 . PVX_117215 78 NPNEVIK|HY 0.082 . PVX_117215 87 ESNNNIK|NE 0.069 . PVX_117215 93 KNESITK|EY 0.066 . PVX_117215 97 ITKEYIK|AL 0.059 . PVX_117215 104 ALVYTNK|LK 0.070 . PVX_117215 106 VYTNKLK|YT 0.060 . PVX_117215 114 TNLDNIK|YD 0.064 . PVX_117215 123 SDPMLYR|RL 0.082 . PVX_117215 124 DPMLYRR|LM 0.162 . PVX_117215 139 NDVHNDR|SG 0.125 . PVX_117215 163 MAQSAHR|ME 0.080 . PVX_117215 169 RMEYGDK|KK 0.062 . PVX_117215 170 MEYGDKK|KG 0.090 . PVX_117215 171 EYGDKKK|GV 0.191 . PVX_117215 185 SLQIDPK|KP 0.061 . PVX_117215 186 LQIDPKK|PL 0.097 . PVX_117215 189 DPKKPLK|VS 0.057 . PVX_117215 197 SVVDGSK|KG 0.057 . PVX_117215 198 VVDGSKK|GM 0.101 . PVX_117215 205 GMWGLLK|ST 0.078 . PVX_117215 230 VSQNVQK|GI 0.101 . PVX_117215 237 GIGVVNK|KI 0.093 . PVX_117215 238 IGVVNKK|II 0.091 . PVX_117215 246 IPVENVK|VT 0.064 . PVX_117215 253 VTFADVK|GC 0.065 . PVX_117215 259 KGCDEVK|QE 0.058 . PVX_117215 270 EIIDYLK|NS 0.056 . PVX_117215 274 YLKNSDK|FT 0.072 . PVX_117215 277 NSDKFTK|IG 0.065 . PVX_117215 281 FTKIGAK|LP 0.060 . PVX_117215 284 IGAKLPK|GI 0.075 . PVX_117215 296 GEPGTGK|TL 0.058 . PVX_117215 301 GKTLIAR|AI 0.097 . PVX_117215 329 FVGVGAR|RI 0.096 . PVX_117215 330 VGVGARR|IR 0.094 . PVX_117215 332 VGARRIR|EL 0.288 . PVX_117215 339 ELFQAAK|KH 0.060 . PVX_117215 340 LFQAAKK|HA 0.098 . PVX_117215 357 IDAVGSK|RS 0.057 . PVX_117215 358 DAVGSKR|SN 0.253 . PVX_117215 361 GSKRSNR|DN 0.663 *ProP* PVX_117215 367 RDNSAVR|MT 0.105 . PVX_117215 400 FPQSLDK|AL 0.061 . PVX_117215 404 LDKALVR|PG 0.073 . PVX_117215 407 ALVRPGR|LD 0.195 . PVX_117215 410 RPGRLDK|TI 0.134 . PVX_117215 420 VPLPDIK|GR 0.066 . PVX_117215 422 LPDIKGR|YE 0.105 . PVX_117215 427 GRYEILK|MY 0.081 . PVX_117215 432 LKMYSSK|IV 0.084 . PVX_117215 437 SKIVLSK|DV 0.103 . PVX_117215 446 DLHVLSR|RT 0.078 . PVX_117215 447 LHVLSRR|TV 0.256 . PVX_117215 466 LNIAAIK|CS 0.062 . PVX_117215 472 KCSVEGK|KA 0.083 . PVX_117215 473 CSVEGKK|AV 0.124 . PVX_117215 486 IEQAFDR|VV 0.121 . PVX_117215 493 VVVGLQR|KS 0.065 . PVX_117215 494 VVGLQRK|SP 0.087 . PVX_117215 502 PLNEEEK|NI 0.069 . PVX_117215 520 LVNFYTK|GS 0.085 . PVX_117215 527 GSDPVHK|AT 0.077 . PVX_117215 533 KATIMPR|GM 0.113 . PVX_117215 542 SLGVTWK|IP 0.062 . PVX_117215 548 KIPISDK|YS 0.074 . PVX_117215 552 SDKYSQK|IR 0.066 . PVX_117215 554 KYSQKIR|DV 0.237 . PVX_117215 576 EEIIFGK|NN 0.063 . PVX_117215 589 CSSDLQR|AT 0.147 . PVX_117215 617 SMFLQDK|KN 0.065 . PVX_117215 618 MFLQDKK|NI 0.107 . PVX_117215 625 NISEEMK|IK 0.069 . PVX_117215 627 SEEMKIK|ID 0.069 . PVX_117215 630 MKIKIDK|SI 0.104 . PVX_117215 634 IDKSIQR|IL 0.086 . PVX_117215 642 LLDSYNR|AK 0.070 . PVX_117215 644 DSYNRAK|KV 0.077 . PVX_117215 645 SYNRAKK|VL 0.349 . PVX_117215 656 HIDELHR|VA 0.089 . PVX_117215 673 LTSDEIK|LA 0.096 . PVX_117215 679 KLAMQGK|HD 0.069 . PVX_117215 684 GKHDQIR|KN 0.098 . PVX_117215 685 KHDQIRK|NR 0.077 . PVX_117215 687 DQIRKNR|EL 0.421 . PVX_117215 690 RKNRELK|QK 0.191 . PVX_117215 692 NRELKQK|EF 0.067 . PVX_117215 697 QKEFNLK|DS 0.074 . PVX_117215 700 FNLKDSR|IS 0.075 . ____________________________^_________________

  • Fasta :-

    >PVX_117215 ATGCTGCTGCTGCGGAACGCCGTGGTGGTGCACCTGAAGAGGAGCCACATGCTCTATGTG GGAAACCTAGCAAACGTGAAATGCATCCTGAACAACAAAAGGTGCTTTTCCCTCTTGAAA AACGAAAGGCTGGATAGACTAAAGAGGGAAATCCGGTACAAGCCAAATGATAATTTCCTC ATATTACAGTTTTATAAGGAGGCAAATGTGCACAACCCTAATGAAGTCATCAAACATTAC GAGAGCAACAATAACATCAAAAATGAAAGCATCACAAAGGAGTATATAAAAGCGCTAGTG TATACCAATAAATTGAAATACACAAACTTGGATAACATAAAATATGATAGCGACCCTATG CTGTATAGACGATTGATGGATGACTCGAGTCATTCAAATGATGTCCATAACGACCGTTCG GGTGGGTATGATACGGGGAATTTACACTCAGATTCTGGCTATGCGAACATGGCTCAGTCA GCCCACAGAATGGAATATGGAGATAAAAAAAAAGGGGTGCATAGTGAAATTTATAGTTTA CAGATAGACCCCAAGAAGCCTTTAAAAGTGTCTGTAGTGGATGGAAGTAAAAAAGGCATG TGGGGTTTGCTCAAGTCAACCATCGGGTTTCTAATCCTCGTGGCGGCGGCAAGTGTATAC CTGGAGGGAGTATCCCAGAATGTCCAAAAAGGTATAGGAGTAGTAAATAAGAAAATAATT CCGGTGGAAAATGTGAAAGTGACCTTTGCAGATGTAAAAGGGTGTGATGAAGTGAAACAA GAACTTGAAGAAATAATTGATTATTTAAAAAATTCGGATAAATTTACAAAAATAGGTGCC AAGTTACCCAAGGGGATACTCCTGTCCGGCGAACCGGGCACAGGAAAAACCTTAATCGCT AGAGCCATAGCGGGGGAAGCGAATGTCCCCTTCCTCCAAGCATCAGGCTCCGAATTTGAA GAAATGTTCGTAGGAGTTGGTGCCAGAAGGATAAGAGAGCTCTTCCAAGCAGCCAAAAAA CATGCGCCATGTATCGTTTTTATCGACGAAATTGATGCAGTTGGATCGAAAAGAAGCAAC CGAGATAATAGTGCTGTCAGAATGACGCTAAACCAGTTGCTAGTCGAATTGGACGGGTTT GAACAGAACGAAGGGATAGTAGTCATCTGTGCAACAAACTTCCCACAAAGTTTGGACAAA GCGTTGGTAAGACCAGGAAGGTTAGACAAAACGATTGTAGTGCCTTTGCCAGATATAAAG GGTAGGTATGAAATTTTAAAAATGTATAGCAGCAAAATTGTGCTGTCCAAAGATGTCGAT TTGCATGTCTTATCGAGAAGAACCGTTGGGATGACAGGAGCAGATTTGAATAACATACTA AACATAGCCGCTATTAAATGCTCCGTGGAAGGAAAGAAAGCGGTTGATATGAATTCAATT GAACAGGCATTTGATAGAGTCGTTGTGGGATTGCAAAGAAAATCTCCCCTAAATGAGGAA GAGAAAAATATTACAGCTTATCACGAAGGTGGTCATACGTTAGTTAATTTTTACACAAAA GGTTCGGACCCTGTCCATAAGGCAACCATTATGCCTAGGGGCATGTCCCTGGGTGTTACT TGGAAAATCCCAATCAGTGATAAGTACAGCCAAAAAATAAGAGACGTACAAAGCGAAATA GATATCCTCATGGGAGGGTTAGTTTCTGAAGAAATTATTTTTGGCAAGAATAATGTGACC ACCGGGTGTTCTAGTGATTTGCAGAGGGCTACTCACATAGCGCAATCTCTTGTTATGAAT TATGGGGTAGGAATTAATGAAGAAAATATATCCATGTTTTTGCAGGATAAAAAAAACATT AGTGAAGAAATGAAAATAAAAATTGATAAATCCATTCAGAGAATTCTTCTAGATTCTTAT AACAGAGCTAAGAAGGTCCTGAATCAACACATTGATGAACTGCACAGGGTTGCTTCTGCC CTCGTAGAGTATGAAACGTTGACGAGTGATGAAATAAAACTAGCTATGCAGGGGAAGCAT GATCAGATAAGAAAAAATAGAGAACTGAAGCAGAAGGAGTTTAACTTGAAGGACAGCCGG ATTTCGTAA
  • Download Fasta

  • Fasta :-

    MLLLRNAVVVHLKRSHMLYVGNLANVKCILNNKRCFSLLKNERLDRLKREIRYKPNDNFL ILQFYKEANVHNPNEVIKHYESNNNIKNESITKEYIKALVYTNKLKYTNLDNIKYDSDPM LYRRLMDDSSHSNDVHNDRSGGYDTGNLHSDSGYANMAQSAHRMEYGDKKKGVHSEIYSL QIDPKKPLKVSVVDGSKKGMWGLLKSTIGFLILVAAASVYLEGVSQNVQKGIGVVNKKII PVENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIA RAIAGEANVPFLQASGSEFEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSN RDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDIK GRYEILKMYSSKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKAVDMNSI EQAFDRVVVGLQRKSPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLGVT WKIPISDKYSQKIRDVQSEIDILMGGLVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVMN YGVGINEENISMFLQDKKNISEEMKIKIDKSIQRILLDSYNRAKKVLNQHIDELHRVASA LVEYETLTSDEIKLAMQGKHDQIRKNRELKQKEFNLKDSRIS

  • title: ATP binding site
  • coordinates: E291,P292,G293,T294,G295,K296,T297,L298,D349,N393
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_117215272 SYLKNSDKFT0.992unspPVX_117215272 SYLKNSDKFT0.992unspPVX_117215272 SYLKNSDKFT0.992unspPVX_117215359 SGSKRSNRDN0.992unspPVX_117215495 SLQRKSPLNE0.995unspPVX_117215154 YSDSGYANMA0.992unspPVX_117215191 SPLKVSVVDG0.992unsp
PVX_117215      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India