PVX_117865 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:  GO:0020011      GO:0016020      

  • Computed_GO_Components:  apicoplast      membrane      

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  • Computed_GO_Functions:        

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
PVX_117865SP0.0423250.9570880.000587CS pos: 18-19. GDG-RK. Pr: 0.5189
No Results

  • Fasta :-

    >PVX_117865 MNLVLCLIWILIYIAGDGRKARVQCKRQNDVNKAKKTYSYSLSKGKLQDQNAHHRNFLLY KRRALFHIRIPKKNLERQNLFSNDLRYKKINKFLENKKTNKLCYLHISNNNHVIKKKRNK NKTLQLLFEKKKLLQEYFSNLKSSFLDRYKNTKIVTKLFLSSSLLMLTLNLIGVKPEDIA LHDKRIIRAFEFYRIVTSALFYGDMSLYVLTNVYMLYVQSQELENSVGSSETLAFYLSQI SILSIICSYLKKPFYSTALLKSLLFVNCMLNPYQKSNLIFGINIYNIYLPYFSIFIDILH AQDLKASLSGILGVTSGSIYYLLNIYAYQKFNRRFFLIPRFLRNYLDSASVDDVL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_117865.fa Sequence name : PVX_117865 Sequence length : 355 VALUES OF COMPUTED PARAMETERS Coef20 : 4.201 CoefTot : 0.088 ChDiff : 32 ZoneTo : 16 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.859 2.000 0.323 0.736 MesoH : 0.378 0.841 -0.124 0.402 MuHd_075 : 15.653 7.844 3.948 2.445 MuHd_095 : 19.644 18.842 6.107 4.034 MuHd_100 : 20.443 19.629 5.463 4.460 MuHd_105 : 14.354 16.432 3.195 3.670 Hmax_075 : 18.667 22.167 5.570 7.502 Hmax_095 : 18.800 26.400 5.289 7.820 Hmax_100 : 19.400 24.500 4.692 7.680 Hmax_105 : 18.800 22.300 4.205 7.220 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9320 0.0680 DFMC : 0.9559 0.0441
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 355 PVX_117865 MNLVLCLIWILIYIAGDGRKARVQCKRQNDVNKAKKTYSYSLSKGKLQDQNAHHRNFLLYKRRALFHIRIPKKNLERQNL 80 FSNDLRYKKINKFLENKKTNKLCYLHISNNNHVIKKKRNKNKTLQLLFEKKKLLQEYFSNLKSSFLDRYKNTKIVTKLFL 160 SSSLLMLTLNLIGVKPEDIALHDKRIIRAFEFYRIVTSALFYGDMSLYVLTNVYMLYVQSQELENSVGSSETLAFYLSQI 240 SILSIICSYLKKPFYSTALLKSLLFVNCMLNPYQKSNLIFGINIYNIYLPYFSIFIDILHAQDLKASLSGILGVTSGSIY 320 YLLNIYAYQKFNRRFFLIPRFLRNYLDSASVDDVL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_117865 19 YIAGDGR|KA 0.096 . PVX_117865 20 IAGDGRK|AR 0.076 . PVX_117865 22 GDGRKAR|VQ 0.411 . PVX_117865 26 KARVQCK|RQ 0.072 . PVX_117865 27 ARVQCKR|QN 0.202 . PVX_117865 33 RQNDVNK|AK 0.074 . PVX_117865 35 NDVNKAK|KT 0.069 . PVX_117865 36 DVNKAKK|TY 0.111 . PVX_117865 44 YSYSLSK|GK 0.063 . PVX_117865 46 YSLSKGK|LQ 0.067 . PVX_117865 55 DQNAHHR|NF 0.078 . PVX_117865 61 RNFLLYK|RR 0.054 . PVX_117865 62 NFLLYKR|RA 0.109 . PVX_117865 63 FLLYKRR|AL 0.151 . PVX_117865 69 RALFHIR|IP 0.083 . PVX_117865 72 FHIRIPK|KN 0.099 . PVX_117865 73 HIRIPKK|NL 0.121 . PVX_117865 77 PKKNLER|QN 0.074 . PVX_117865 86 LFSNDLR|YK 0.089 . PVX_117865 88 SNDLRYK|KI 0.069 . PVX_117865 89 NDLRYKK|IN 0.170 . PVX_117865 92 RYKKINK|FL 0.071 . PVX_117865 97 NKFLENK|KT 0.057 . PVX_117865 98 KFLENKK|TN 0.070 . PVX_117865 101 ENKKTNK|LC 0.060 . PVX_117865 115 NNNHVIK|KK 0.079 . PVX_117865 116 NNHVIKK|KR 0.098 . PVX_117865 117 NHVIKKK|RN 0.097 . PVX_117865 118 HVIKKKR|NK 0.226 . PVX_117865 120 IKKKRNK|NK 0.068 . PVX_117865 122 KKRNKNK|TL 0.075 . PVX_117865 130 LQLLFEK|KK 0.055 . PVX_117865 131 QLLFEKK|KL 0.090 . PVX_117865 132 LLFEKKK|LL 0.099 . PVX_117865 142 EYFSNLK|SS 0.057 . PVX_117865 148 KSSFLDR|YK 0.160 . PVX_117865 150 SFLDRYK|NT 0.061 . PVX_117865 153 DRYKNTK|IV 0.095 . PVX_117865 157 NTKIVTK|LF 0.057 . PVX_117865 175 LNLIGVK|PE 0.065 . PVX_117865 184 DIALHDK|RI 0.067 . PVX_117865 185 IALHDKR|II 0.227 . PVX_117865 188 HDKRIIR|AF 0.256 . PVX_117865 194 RAFEFYR|IV 0.131 . PVX_117865 251 IICSYLK|KP 0.054 . PVX_117865 252 ICSYLKK|PF 0.087 . PVX_117865 261 YSTALLK|SL 0.075 . PVX_117865 275 MLNPYQK|SN 0.078 . PVX_117865 305 LHAQDLK|AS 0.061 . PVX_117865 330 NIYAYQK|FN 0.060 . PVX_117865 333 AYQKFNR|RF 0.086 . PVX_117865 334 YQKFNRR|FF 0.102 . PVX_117865 340 RFFLIPR|FL 0.100 . PVX_117865 343 LIPRFLR|NY 0.169 . ____________________________^_________________

  • Fasta :-

    >PVX_117865 ATGAACCTTGTGCTGTGCCTAATTTGGATCCTTATATACATAGCTGGCGACGGAAGAAAG GCACGTGTGCAATGCAAAAGACAAAATGACGTGAACAAAGCGAAGAAGACCTACTCGTAC AGCCTGTCGAAGGGTAAACTACAGGATCAAAATGCACACCATCGGAATTTTTTACTCTAT AAGAGAAGAGCCCTGTTCCATATACGCATTCCGAAGAAGAACCTGGAGAGGCAAAACCTA TTCAGCAATGATCTCCGTTATAAAAAAATTAACAAATTTTTGGAAAATAAAAAGACAAAC AAGTTGTGTTATTTACATATAAGTAATAACAATCATGTAATAAAAAAAAAGAGGAATAAA AACAAAACTTTACAACTGTTATTTGAAAAAAAAAAGTTACTACAAGAATATTTTTCCAAC TTAAAATCATCCTTTTTGGATAGGTATAAAAACACAAAAATTGTAACGAAGCTTTTTTTA TCATCCTCCTTGCTGATGCTTACCCTTAACCTCATTGGAGTAAAACCAGAAGACATCGCT CTACACGATAAAAGAATCATCAGAGCATTTGAATTTTACAGAATTGTAACATCAGCATTG TTTTATGGGGACATGTCACTATACGTGTTAACAAATGTGTATATGCTATATGTGCAGAGT CAAGAGTTGGAAAATTCGGTGGGCTCATCTGAAACGCTGGCTTTTTATTTGTCCCAAATT TCTATCCTCTCCATAATTTGCTCCTACTTAAAGAAGCCCTTCTATTCAACAGCACTTCTC AAATCGCTGCTCTTTGTAAACTGTATGTTAAATCCTTACCAGAAATCTAACTTAATTTTT GGGATAAATATTTACAATATTTACTTACCCTATTTCTCCATCTTTATTGATATTTTGCAT GCACAAGATTTGAAGGCTTCCCTGTCGGGGATCCTGGGGGTGACCAGTGGGTCCATTTAC TACCTGCTGAATATTTACGCGTATCAAAAATTTAACAGAAGGTTTTTCCTAATTCCGCGC TTTTTGAGGAATTACCTCGATTCGGCGAGCGTGGACGATGTGTTATAG
  • Download Fasta

  • Fasta :-

    MNLVLCLIWILIYIAGDGRKARVQCKRQNDVNKAKKTYSYSLSKGKLQDQNAHHRNFLLY KRRALFHIRIPKKNLERQNLFSNDLRYKKINKFLENKKTNKLCYLHISNNNHVIKKKRNK NKTLQLLFEKKKLLQEYFSNLKSSFLDRYKNTKIVTKLFLSSSLLMLTLNLIGVKPEDIA LHDKRIIRAFEFYRIVTSALFYGDMSLYVLTNVYMLYVQSQELENSVGSSETLAFYLSQI SILSIICSYLKKPFYSTALLKSLLFVNCMLNPYQKSNLIFGINIYNIYLPYFSIFIDILH AQDLKASLSGILGVTSGSIYYLLNIYAYQKFNRRFFLIPRFLRNYLDSASVDDVL

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PVX_117865      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India