PVX_119812 | DER1-like protein, putative

  • Computed_GO_Component_IDs:  GO:0020011      

  • Computed_GO_Components:  apicoplast      

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
PVX_119812mTP0.0900000.4321580.477842CS pos: 30-31. NRF-AA. Pr: 0.4034
No Results

  • Fasta :-

    >PVX_119812 MCLLRRLLAPLCVILLSVRQQHARVCSNRFAANKFGANKFAANVLGGGARVAEPPRGTEA LKRRTGRRSSTPLNSDKKQKETPQHGYYFTKEKNKIVKKKKKKFSLNYCRDPKTTARGVK RRSHYPLLFISPPSTSLSEITESVKALFNVDYIENNYLYSYIKSFRRTPPITKLYLLCTL LLSICMHVNKNIYKLILFDFGKVFYEGQLWRLITPYFYIGNLYLQYFLMFNYLHIYMSSV EIAHYKNPEDLLTFLTFGYLSNLLFTIIGSMYSENVMNLQRYVNQLRRVILLGGKSSSTK GDTTVRIAKEQYNHLGYVFSTYILYYWSRINEGTLINCFELFLIKAEYVPFFFIIQNVLL YNEFSLFEVASILSSYFFFTYEKSLQLNFLRRFNLALLKALRVYPMYEAYREEYE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_119812.fa Sequence name : PVX_119812 Sequence length : 415 VALUES OF COMPUTED PARAMETERS Coef20 : 5.167 CoefTot : 0.715 ChDiff : 29 ZoneTo : 52 KR : 8 DE : 0 CleavSite : 31 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.824 2.053 0.312 0.678 MesoH : 0.242 0.789 -0.209 0.418 MuHd_075 : 57.969 31.637 16.878 12.108 MuHd_095 : 30.927 19.701 9.123 6.944 MuHd_100 : 30.247 22.347 8.157 8.216 MuHd_105 : 32.939 19.658 7.063 8.289 Hmax_075 : 18.300 16.500 4.235 6.090 Hmax_095 : 14.900 15.400 2.732 5.565 Hmax_100 : 19.700 27.700 3.026 8.000 Hmax_105 : 19.717 27.883 4.881 8.050 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0077 0.9923 DFMC : 0.0077 0.9923 This protein is probably imported in mitochondria. f(Ser) = 0.0385 f(Arg) = 0.1154 CMi = 0.16611 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 415 PVX_119812 MCLLRRLLAPLCVILLSVRQQHARVCSNRFAANKFGANKFAANVLGGGARVAEPPRGTEALKRRTGRRSSTPLNSDKKQK 80 ETPQHGYYFTKEKNKIVKKKKKKFSLNYCRDPKTTARGVKRRSHYPLLFISPPSTSLSEITESVKALFNVDYIENNYLYS 160 YIKSFRRTPPITKLYLLCTLLLSICMHVNKNIYKLILFDFGKVFYEGQLWRLITPYFYIGNLYLQYFLMFNYLHIYMSSV 240 EIAHYKNPEDLLTFLTFGYLSNLLFTIIGSMYSENVMNLQRYVNQLRRVILLGGKSSSTKGDTTVRIAKEQYNHLGYVFS 320 TYILYYWSRINEGTLINCFELFLIKAEYVPFFFIIQNVLLYNEFSLFEVASILSSYFFFTYEKSLQLNFLRRFNLALLKA 400 LRVYPMYEAYREEYE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_119812 5 --MCLLR|RL 0.073 . PVX_119812 6 -MCLLRR|LL 0.090 . PVX_119812 19 VILLSVR|QQ 0.071 . PVX_119812 24 VRQQHAR|VC 0.117 . PVX_119812 29 ARVCSNR|FA 0.168 . PVX_119812 34 NRFAANK|FG 0.067 . PVX_119812 39 NKFGANK|FA 0.082 . PVX_119812 50 VLGGGAR|VA 0.115 . PVX_119812 56 RVAEPPR|GT 0.114 . PVX_119812 62 RGTEALK|RR 0.055 . PVX_119812 63 GTEALKR|RT 0.185 . PVX_119812 64 TEALKRR|TG 0.138 . PVX_119812 67 LKRRTGR|RS 0.376 . PVX_119812 68 KRRTGRR|SS 0.333 . PVX_119812 77 TPLNSDK|KQ 0.063 . PVX_119812 78 PLNSDKK|QK 0.120 . PVX_119812 80 NSDKKQK|ET 0.077 . PVX_119812 91 HGYYFTK|EK 0.073 . PVX_119812 93 YYFTKEK|NK 0.061 . PVX_119812 95 FTKEKNK|IV 0.080 . PVX_119812 98 EKNKIVK|KK 0.069 . PVX_119812 99 KNKIVKK|KK 0.088 . PVX_119812 100 NKIVKKK|KK 0.139 . PVX_119812 101 KIVKKKK|KK 0.096 . PVX_119812 102 IVKKKKK|KF 0.107 . PVX_119812 103 VKKKKKK|FS 0.122 . PVX_119812 110 FSLNYCR|DP 0.091 . PVX_119812 113 NYCRDPK|TT 0.111 . PVX_119812 117 DPKTTAR|GV 0.131 . PVX_119812 120 TTARGVK|RR 0.127 . PVX_119812 121 TARGVKR|RS 0.189 . PVX_119812 122 ARGVKRR|SH 0.439 . PVX_119812 145 EITESVK|AL 0.062 . PVX_119812 163 YLYSYIK|SF 0.072 . PVX_119812 166 SYIKSFR|RT 0.091 . PVX_119812 167 YIKSFRR|TP 0.089 . PVX_119812 173 RTPPITK|LY 0.051 . PVX_119812 190 ICMHVNK|NI 0.068 . PVX_119812 194 VNKNIYK|LI 0.060 . PVX_119812 202 ILFDFGK|VF 0.067 . PVX_119812 211 YEGQLWR|LI 0.093 . PVX_119812 246 VEIAHYK|NP 0.071 . PVX_119812 281 NVMNLQR|YV 0.128 . PVX_119812 287 RYVNQLR|RV 0.088 . PVX_119812 288 YVNQLRR|VI 0.128 . PVX_119812 295 VILLGGK|SS 0.078 . PVX_119812 300 GKSSSTK|GD 0.088 . PVX_119812 306 KGDTTVR|IA 0.092 . PVX_119812 309 TTVRIAK|EQ 0.126 . PVX_119812 329 ILYYWSR|IN 0.098 . PVX_119812 345 FELFLIK|AE 0.053 . PVX_119812 383 FFFTYEK|SL 0.060 . PVX_119812 391 LQLNFLR|RF 0.073 . PVX_119812 392 QLNFLRR|FN 0.178 . PVX_119812 399 FNLALLK|AL 0.059 . PVX_119812 402 ALLKALR|VY 0.069 . PVX_119812 411 PMYEAYR|EE 0.076 . ____________________________^_________________

  • Fasta :-

    >PVX_119812 ATGTGTTTGCTGCGCAGGCTGCTCGCCCCCCTATGCGTAATTCTCCTGAGTGTGAGGCAG CAGCACGCGAGGGTTTGCTCGAACAGGTTTGCGGCTAACAAATTTGGGGCGAACAAATTT GCGGCGAACGTGCTGGGCGGCGGCGCGCGTGTAGCGGAGCCACCCCGGGGGACGGAGGCC CTGAAGAGGCGCACGGGAAGGAGGAGCAGCACCCCCCTCAACAGTGACAAGAAGCAAAAG GAGACACCACAGCATGGCTACTACTTTACGAAGGAGAAAAACAAAATAGTAAAAAAAAAA AAAAAAAAATTTTCACTGAATTATTGTAGAGACCCCAAAACAACAGCAAGGGGAGTAAAA AGGAGAAGCCACTACCCCCTCCTTTTTATATCCCCCCCATCCACATCATTAAGCGAAATT ACCGAAAGTGTGAAGGCCCTCTTCAACGTAGACTACATAGAGAATAACTACCTCTATTCT TACATCAAATCGTTTAGAAGGACCCCCCCGATAACCAAGCTGTACCTTCTCTGCACCTTA CTTTTGAGCATCTGCATGCATGTGAATAAAAATATTTACAAGTTGATTCTGTTCGACTTT GGGAAGGTGTTCTATGAGGGTCAATTGTGGAGACTAATTACGCCCTATTTTTACATAGGC AATTTATACCTTCAGTATTTCCTCATGTTTAACTACCTGCACATCTACATGTCTTCTGTC GAAATTGCACACTACAAGAACCCGGAGGACCTGCTAACCTTCCTCACGTTTGGCTACCTG TCTAACCTCCTTTTTACCATAATAGGGAGTATGTACAGTGAAAATGTTATGAACCTCCAA CGGTATGTGAATCAGCTGAGGAGAGTTATCCTTTTAGGGGGAAAGAGCTCTTCCACCAAG GGAGACACAACCGTGCGTATAGCAAAAGAGCAGTACAACCACCTCGGTTATGTTTTCTCC ACGTACATCTTATATTACTGGAGTAGGATCAACGAAGGTACTCTTATTAACTGCTTCGAG CTCTTCCTCATCAAGGCGGAATATGTTCCTTTTTTTTTTATCATCCAGAATGTTTTGCTA TACAATGAATTTTCTCTCTTTGAAGTTGCATCCATTTTGTCTAGCTATTTTTTCTTTACA TATGAGAAGAGCTTGCAGTTGAATTTTTTGCGGCGCTTCAACTTGGCCCTGCTCAAGGCG CTGCGCGTCTACCCCATGTACGAGGCCTACAGGGAGGAGTACGAGTAG
  • Download Fasta

  • Fasta :-

    MCLLRRLLAPLCVILLSVRQQHARVCSNRFAANKFGANKFAANVLGGGARVAEPPRGTEA LKRRTGRRSSTPLNSDKKQKETPQHGYYFTKEKNKIVKKKKKKFSLNYCRDPKTTARGVK RRSHYPLLFISPPSTSLSEITESVKALFNVDYIENNYLYSYIKSFRRTPPITKLYLLCTL LLSICMHVNKNIYKLILFDFGKVFYEGQLWRLITPYFYIGNLYLQYFLMFNYLHIYMSSV EIAHYKNPEDLLTFLTFGYLSNLLFTIIGSMYSENVMNLQRYVNQLRRVILLGGKSSSTK GDTTVRIAKEQYNHLGYVFSTYILYYWSRINEGTLINCFELFLIKAEYVPFFFIIQNVLL YNEFSLFEVASILSSYFFFTYEKSLQLNFLRRFNLALLKALRVYPMYEAYREEYE

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_119812298 SGKSSSTKGD0.992unspPVX_119812298 SGKSSSTKGD0.992unspPVX_119812298 SGKSSSTKGD0.992unspPVX_11981270 SGRRSSTPLN0.994unspPVX_119812123 SVKRRSHYPL0.994unsp
PVX_119812      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India