PVX_122115 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004222      

  • Computed_GO_Functions:  metalloendopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

No Results
No Results

  • Fasta :-

    >PVX_122115 MDPKNHVLFCSNALMEHRRVASNFLPTYREKSYDYERHQDVVSLILSMLPLLMTSVIHLL IKTNGYYIGNLFLMITYLFSFFFFILYYYNSYAVFVLFVFSSFFISLCLHEFAHALVAYK YGDITMVYKGYLYLDIANYLDIFHTLIIPSITLFITGFGLPGNLYWIQLHFIRSRFQLSF IYLSGPISDILCILLIVFFYNFYSYVRNSKNLSVQPHSILFISLATAASFLVDSFLLNIC PIFGFDGWGIVEPYLPYCVNSLINEEIVNTYLSYICPLLVFIYFNFIETKYLFFTKIVNF ILARILGIEISHVTIGVSAFPTLYAYLRNV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_122115.fa Sequence name : PVX_122115 Sequence length : 330 VALUES OF COMPUTED PARAMETERS Coef20 : 3.876 CoefTot : -0.850 ChDiff : -1 ZoneTo : 29 KR : 4 DE : 2 CleavSite : 31 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.553 2.612 0.521 0.902 MesoH : 1.475 1.542 0.121 0.634 MuHd_075 : 21.296 21.688 7.837 5.696 MuHd_095 : 26.118 20.471 7.730 7.299 MuHd_100 : 29.591 21.997 8.842 7.828 MuHd_105 : 37.122 20.980 8.735 8.506 Hmax_075 : 7.612 12.483 1.125 2.660 Hmax_095 : 13.300 14.438 2.055 5.014 Hmax_100 : 8.800 13.700 1.922 4.500 Hmax_105 : 10.500 10.500 0.033 4.190 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7607 0.2393 DFMC : 0.8705 0.1295
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 330 PVX_122115 MDPKNHVLFCSNALMEHRRVASNFLPTYREKSYDYERHQDVVSLILSMLPLLMTSVIHLLIKTNGYYIGNLFLMITYLFS 80 FFFFILYYYNSYAVFVLFVFSSFFISLCLHEFAHALVAYKYGDITMVYKGYLYLDIANYLDIFHTLIIPSITLFITGFGL 160 PGNLYWIQLHFIRSRFQLSFIYLSGPISDILCILLIVFFYNFYSYVRNSKNLSVQPHSILFISLATAASFLVDSFLLNIC 240 PIFGFDGWGIVEPYLPYCVNSLINEEIVNTYLSYICPLLVFIYFNFIETKYLFFTKIVNFILARILGIEISHVTIGVSAF 320 PTLYAYLRNV 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_122115 4 ---MDPK|NH 0.052 . PVX_122115 18 NALMEHR|RV 0.085 . PVX_122115 19 ALMEHRR|VA 0.246 . PVX_122115 29 NFLPTYR|EK 0.073 . PVX_122115 31 LPTYREK|SY 0.100 . PVX_122115 37 KSYDYER|HQ 0.083 . PVX_122115 62 VIHLLIK|TN 0.070 . PVX_122115 120 HALVAYK|YG 0.063 . PVX_122115 129 DITMVYK|GY 0.058 . PVX_122115 173 IQLHFIR|SR 0.103 . PVX_122115 175 LHFIRSR|FQ 0.077 . PVX_122115 207 NFYSYVR|NS 0.063 . PVX_122115 210 SYVRNSK|NL 0.152 . PVX_122115 290 FNFIETK|YL 0.062 . PVX_122115 296 KYLFFTK|IV 0.079 . PVX_122115 304 VNFILAR|IL 0.115 . PVX_122115 328 TLYAYLR|NV 0.124 . ____________________________^_________________

  • Fasta :-

    >PVX_122115 ATGGATCCGAAAAACCACGTGCTCTTTTGCAGCAACGCACTGATGGAACACAGAAGAGTA GCGAGCAATTTCCTTCCCACGTACAGAGAAAAAAGTTACGATTATGAGAGGCACCAAGAT GTGGTATCGCTTATTCTGTCGATGCTCCCTTTATTAATGACAAGTGTAATTCACCTTTTG ATAAAAACGAATGGTTACTATATTGGGAATTTATTCCTAATGATAACTTATTTATTTTCT TTTTTTTTCTTCATTTTGTATTATTACAATTCTTACGCAGTGTTTGTCCTTTTTGTGTTT TCCTCCTTTTTCATATCATTGTGTTTACACGAATTTGCCCACGCGCTTGTTGCGTATAAG TACGGAGACATTACGATGGTTTACAAAGGCTACCTCTATCTGGACATTGCAAATTATTTA GACATTTTCCACACGCTTATAATACCTTCTATAACGCTGTTTATAACCGGCTTTGGCCTA CCAGGGAATTTATATTGGATACAGCTACACTTTATAAGAAGCAGATTTCAGCTGTCATTT ATTTATTTATCGGGCCCCATATCAGACATTTTGTGTATCCTGCTAATTGTTTTTTTTTAC AATTTTTACTCCTACGTTAGGAATAGCAAAAATTTAAGTGTGCAGCCGCACTCCATTTTA TTCATATCCCTTGCCACTGCTGCTTCCTTCCTGGTGGACTCCTTTCTTTTAAACATTTGT CCAATTTTTGGCTTTGACGGATGGGGGATCGTGGAGCCCTACCTCCCCTACTGTGTGAAT AGCCTAATCAACGAAGAAATTGTGAACACCTATTTGTCCTACATATGCCCCCTCCTGGTT TTTATATATTTTAACTTTATCGAAACCAAGTACCTCTTCTTCACAAAGATTGTTAACTTT ATATTGGCGCGCATCCTCGGAATTGAAATTTCGCACGTGACAATTGGGGTCAGCGCGTTT CCCACGTTGTATGCGTACCTCAGAAATGTGTAG
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  • Fasta :-

    No Results
  • title: active site
  • coordinates: H110,E111,H114,N238,D246
No Results
No Results
IDSitePeptideScoreMethod
PVX_12211532 SYREKSYDYE0.995unsp
PVX_122115      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India