PVX_122670 | U4/U6.U5 tri-snRNP-associated protein 2, putative

UniProt_ID: A5JZF9

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0004197 GO:0004221 GO:0036459 GO:0008270
Computed_GO_Functions: cysteine-type endopeptidase activity obsolete ubiquitin thiolesterase activity thiol-dependent ubiquitinyl hydrolase activity zinc ion binding
Computed_GO_Process_IDs: GO:0016579 GO:0006511
Computed_GO_Processes: protein deubiquitination ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	PVX_122670	OTHER	0.999999	0.000001	0.000000

No Results

Fasta :-
>PVX_122670 MEKKARKKNPGDKAHAGNKRGGKKKESYSGGVEEVEQVDQDGEGEGAEQATATTATNPTS PTSPTSPTSVSNSAEARLVPRGAGRGRGRVCPYLRTINRNLLDFDFEKLCSISMSNLHVY ACLVCGMYFQGIGKGTYAYTHALEKNHYVFINLESCKTCCLPENYEIEDASLNDIKYFLK PMYTVEQVEYICRNSILGKSLDGADFFPGFVGLNNLKHTDYCNVIIQLVCSIIPLRNFFL VFETKKYMAKNIISSLSELIKKIYNPRNFKGVVSPHEFLQTVGIESKKNFKIGSQNDPLD FFLWLISKIHRYEERALRKGVKGKAAKKRKVAHGGGSEQREEEGGEGEEDEEDEGGKILP GHHLSQLNSMLSSSSESHTSEEAAPGMDAATKRKRKKKKKKKKKWKYHKVNIIDYCFDGE LIVKTKKKKKKKKRSEGDDHMNSAHNTKKREQNDTYSERNAREDAKFSHHLDNEEGEEDD VSDEDDEDDIDPAEGEELNGKKNYVTEKIPFRTLSLKLPNPPIFKSTTESNIIPQVSIFE LLTKFDGETESFLNEKSEPSTLIISKLPKYLVFTIKRFSRNNFFVEKNGTIVNFVIKNLD MKDYVHEDYLEKNPVTKYNLIANIFHSGSVSSGTYKIHVLNQASNEWYEMEDLHVITVLP QLVLLPESCVQLYQRQDVQLNGELP
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_122670.fa Sequence name : PVX_122670 Sequence length : 685 VALUES OF COMPUTED PARAMETERS Coef20 : 3.050 CoefTot : 0.000 ChDiff : 1 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.241 1.882 0.305 0.565 MesoH : -0.558 0.454 -0.329 0.238 MuHd_075 : 36.870 16.216 10.289 5.952 MuHd_095 : 9.743 8.318 3.319 2.437 MuHd_100 : 8.422 5.512 1.451 2.110 MuHd_105 : 14.564 3.893 1.786 2.738 Hmax_075 : -1.633 -3.267 -4.618 0.957 Hmax_095 : -20.475 -8.137 -7.787 -1.365 Hmax_100 : -19.000 -8.600 -7.844 -1.700 Hmax_105 : -15.400 -8.400 -7.257 -1.560 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9851 0.0149 DFMC : 0.9834 0.0166

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 685 PVX_122670 MEKKARKKNPGDKAHAGNKRGGKKKESYSGGVEEVEQVDQDGEGEGAEQATATTATNPTSPTSPTSPTSVSNSAEARLVP 80 RGAGRGRGRVCPYLRTINRNLLDFDFEKLCSISMSNLHVYACLVCGMYFQGIGKGTYAYTHALEKNHYVFINLESCKTCC 160 LPENYEIEDASLNDIKYFLKPMYTVEQVEYICRNSILGKSLDGADFFPGFVGLNNLKHTDYCNVIIQLVCSIIPLRNFFL 240 VFETKKYMAKNIISSLSELIKKIYNPRNFKGVVSPHEFLQTVGIESKKNFKIGSQNDPLDFFLWLISKIHRYEERALRKG 320 VKGKAAKKRKVAHGGGSEQREEEGGEGEEDEEDEGGKILPGHHLSQLNSMLSSSSESHTSEEAAPGMDAATKRKRKKKKK 400 KKKKWKYHKVNIIDYCFDGELIVKTKKKKKKKKRSEGDDHMNSAHNTKKREQNDTYSERNAREDAKFSHHLDNEEGEEDD 480 VSDEDDEDDIDPAEGEELNGKKNYVTEKIPFRTLSLKLPNPPIFKSTTESNIIPQVSIFELLTKFDGETESFLNEKSEPS 560 TLIISKLPKYLVFTIKRFSRNNFFVEKNGTIVNFVIKNLDMKDYVHEDYLEKNPVTKYNLIANIFHSGSVSSGTYKIHVL 640 NQASNEWYEMEDLHVITVLPQLVLLPESCVQLYQRQDVQLNGELP 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........P....................................................................P.. 400 .................................P.............................................. 480 ................................................................................ 560 ................................................................................ 640 ............................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 3 Name Pos Context Score Pred ____________________________v_________________ PVX_122670 3 ----MEK|KA 0.071 . PVX_122670 4 ---MEKK|AR 0.095 . PVX_122670 6 -MEKKAR|KK 0.118 . PVX_122670 7 MEKKARK|KN 0.074 . PVX_122670 8 EKKARKK|NP 0.134 . PVX_122670 13 KKNPGDK|AH 0.067 . PVX_122670 19 KAHAGNK|RG 0.067 . PVX_122670 20 AHAGNKR|GG 0.244 . PVX_122670 23 GNKRGGK|KK 0.132 . PVX_122670 24 NKRGGKK|KE 0.111 . PVX_122670 25 KRGGKKK|ES 0.189 . PVX_122670 77 SNSAEAR|LV 0.174 . PVX_122670 81 EARLVPR|GA 0.202 . PVX_122670 85 VPRGAGR|GR 0.116 . PVX_122670 87 RGAGRGR|GR 0.074 . PVX_122670 89 AGRGRGR|VC 0.077 . PVX_122670 95 RVCPYLR|TI 0.092 . PVX_122670 99 YLRTINR|NL 0.081 . PVX_122670 108 LDFDFEK|LC 0.067 . PVX_122670 134 YFQGIGK|GT 0.071 . PVX_122670 145 YTHALEK|NH 0.058 . PVX_122670 157 INLESCK|TC 0.060 . PVX_122670 176 ASLNDIK|YF 0.063 . PVX_122670 180 DIKYFLK|PM 0.068 . PVX_122670 193 QVEYICR|NS 0.069 . PVX_122670 199 RNSILGK|SL 0.146 . PVX_122670 217 VGLNNLK|HT 0.060 . PVX_122670 236 CSIIPLR|NF 0.086 . PVX_122670 245 FLVFETK|KY 0.063 . PVX_122670 246 LVFETKK|YM 0.093 . PVX_122670 250 TKKYMAK|NI 0.080 . PVX_122670 261 SLSELIK|KI 0.069 . PVX_122670 262 LSELIKK|IY 0.083 . PVX_122670 267 KKIYNPR|NF 0.091 . PVX_122670 270 YNPRNFK|GV 0.125 . PVX_122670 287 TVGIESK|KN 0.073 . PVX_122670 288 VGIESKK|NF 0.084 . PVX_122670 291 ESKKNFK|IG 0.065 . PVX_122670 308 FLWLISK|IH 0.058 . PVX_122670 311 LISKIHR|YE 0.121 . PVX_122670 315 IHRYEER|AL 0.135 . PVX_122670 318 YEERALR|KG 0.156 . PVX_122670 319 EERALRK|GV 0.114 . PVX_122670 322 ALRKGVK|GK 0.069 . PVX_122670 324 RKGVKGK|AA 0.094 . PVX_122670 327 VKGKAAK|KR 0.065 . PVX_122670 328 KGKAAKK|RK 0.086 . PVX_122670 329 GKAAKKR|KV 0.615 *ProP* PVX_122670 330 KAAKKRK|VA 0.229 . PVX_122670 340 GGGSEQR|EE 0.129 . PVX_122670 357 EEDEGGK|IL 0.056 . PVX_122670 392 GMDAATK|RK 0.059 . PVX_122670 393 MDAATKR|KR 0.188 . PVX_122670 394 DAATKRK|RK 0.080 . PVX_122670 395 AATKRKR|KK 0.154 . PVX_122670 396 ATKRKRK|KK 0.256 . PVX_122670 397 TKRKRKK|KK 0.153 . PVX_122670 398 KRKRKKK|KK 0.507 *ProP* PVX_122670 399 RKRKKKK|KK 0.196 . PVX_122670 400 KRKKKKK|KK 0.148 . PVX_122670 401 RKKKKKK|KK 0.155 . PVX_122670 402 KKKKKKK|KK 0.136 . PVX_122670 403 KKKKKKK|KW 0.144 . PVX_122670 404 KKKKKKK|WK 0.167 . PVX_122670 406 KKKKKWK|YH 0.081 . PVX_122670 409 KKWKYHK|VN 0.061 . PVX_122670 424 DGELIVK|TK 0.054 . PVX_122670 426 ELIVKTK|KK 0.065 . PVX_122670 427 LIVKTKK|KK 0.092 . PVX_122670 428 IVKTKKK|KK 0.122 . PVX_122670 429 VKTKKKK|KK 0.086 . PVX_122670 430 KTKKKKK|KK 0.133 . PVX_122670 431 TKKKKKK|KK 0.173 . PVX_122670 432 KKKKKKK|KR 0.179 . PVX_122670 433 KKKKKKK|RS 0.166 . PVX_122670 434 KKKKKKR|SE 0.551 *ProP* PVX_122670 448 NSAHNTK|KR 0.071 . PVX_122670 449 SAHNTKK|RE 0.089 . PVX_122670 450 AHNTKKR|EQ 0.221 . PVX_122670 459 NDTYSER|NA 0.087 . PVX_122670 462 YSERNAR|ED 0.214 . PVX_122670 466 NAREDAK|FS 0.081 . PVX_122670 501 GEELNGK|KN 0.061 . PVX_122670 502 EELNGKK|NY 0.075 . PVX_122670 508 KNYVTEK|IP 0.066 . PVX_122670 512 TEKIPFR|TL 0.111 . PVX_122670 517 FRTLSLK|LP 0.059 . PVX_122670 525 PNPPIFK|ST 0.076 . PVX_122670 544 IFELLTK|FD 0.071 . PVX_122670 556 ESFLNEK|SE 0.067 . PVX_122670 566 STLIISK|LP 0.057 . PVX_122670 569 IISKLPK|YL 0.072 . PVX_122670 576 YLVFTIK|RF 0.065 . PVX_122670 577 LVFTIKR|FS 0.172 . PVX_122670 580 TIKRFSR|NN 0.309 . PVX_122670 587 NNFFVEK|NG 0.064 . PVX_122670 597 IVNFVIK|NL 0.070 . PVX_122670 602 IKNLDMK|DY 0.073 . PVX_122670 612 HEDYLEK|NP 0.054 . PVX_122670 617 EKNPVTK|YN 0.073 . PVX_122670 636 VSSGTYK|IH 0.062 . PVX_122670 675 CVQLYQR|QD 0.079 . ____________________________^_________________

Fasta :-
>PVX_122670 ATGGAGAAGAAAGCGAGAAAGAAGAACCCCGGTGACAAGGCACACGCGGGGAACAAGCGG GGGGGGAAGAAAAAGGAGAGTTACTCGGGGGGGGTGGAGGAGGTGGAGCAAGTGGACCAA GACGGCGAGGGGGAGGGGGCAGAACAGGCCACCGCGACAACCGCGACAAACCCGACCAGT CCAACCAGTCCAACCAGCCCAACCAGTGTAAGCAACTCCGCGGAGGCGCGGCTGGTCCCG CGGGGCGCGGGCAGGGGGAGGGGCAGGGTGTGCCCGTACCTGCGTACCATCAACAGGAAC CTCCTCGACTTTGACTTCGAAAAGTTGTGCAGCATCAGCATGTCCAACCTGCACGTATAC GCATGTCTAGTCTGCGGAATGTACTTCCAAGGAATAGGAAAAGGGACCTACGCCTACACA CACGCTCTGGAAAAAAACCATTACGTCTTCATCAATCTGGAGAGCTGCAAAACTTGTTGC CTCCCAGAAAATTACGAAATAGAAGATGCTTCTCTAAATGATATAAAATATTTTTTAAAA CCAATGTATACTGTAGAACAAGTGGAATACATTTGTCGCAATTCCATTTTGGGAAAATCG CTAGATGGGGCAGATTTCTTTCCTGGCTTTGTAGGCCTCAATAATTTAAAACACACTGAC TACTGCAATGTGATCATTCAGCTTGTGTGCAGCATCATCCCATTGCGCAACTTTTTTTTA GTGTTCGAAACGAAGAAGTATATGGCCAAAAATATCATTTCCTCTTTATCTGAGCTGATT AAGAAGATTTATAACCCTCGAAATTTCAAGGGGGTTGTTTCTCCCCATGAGTTTTTACAA ACTGTGGGCATTGAGTCCAAGAAGAACTTCAAAATTGGGTCCCAAAACGACCCGCTGGAC TTTTTCCTCTGGCTAATTAGTAAAATACATAGGTATGAGGAGCGGGCGCTGCGGAAGGGC GTGAAGGGGAAGGCCGCCAAGAAGAGGAAGGTTGCCCACGGGGGTGGAAGCGAACAAAGG GAAGAAGAAGGCGGGGAAGGCGAGGAAGACGAAGAGGACGAAGGAGGCAAAATCCTGCCT GGGCACCACCTCTCGCAGCTGAACTCCATGCTGTCCTCCTCCAGCGAGTCGCACACGTCG GAAGAGGCTGCCCCCGGCATGGATGCAGCAACGAAAAGGAAGAGGAAAAAAAAAAAAAAA AAAAAAAAAAAATGGAAGTACCACAAGGTAAACATTATCGACTACTGCTTTGATGGGGAG CTAATCGTCAAAACGAAGAAAAAAAAAAAAAAAAAAAAACGCTCGGAAGGAGATGACCAT ATGAACAGTGCCCATAATACAAAAAAGAGGGAACAAAACGACACGTACAGTGAGCGGAAT GCACGTGAAGATGCCAAATTTTCTCACCACTTGGATAATGAAGAGGGGGAAGAGGATGAC GTCAGTGATGAGGACGACGAAGACGATATAGACCCAGCTGAGGGGGAAGAATTGAACGGA AAAAAAAATTACGTGACGGAAAAAATTCCATTCAGAACTCTCTCCCTGAAGTTACCCAAC CCACCCATTTTTAAAAGCACAACAGAAAGTAACATCATTCCGCAGGTATCCATTTTCGAG TTATTAACAAAATTCGATGGAGAAACGGAGTCCTTTTTAAATGAAAAATCGGAGCCCAGC ACTTTAATCATTTCCAAGTTGCCCAAATATTTAGTCTTTACCATTAAGAGGTTTTCCCGC AACAATTTTTTTGTTGAAAAAAATGGCACCATTGTTAATTTTGTTATAAAAAATTTAGAC ATGAAGGATTACGTACATGAAGATTACCTGGAGAAGAACCCCGTGACCAAGTACAATTTA ATTGCCAACATTTTCCACAGCGGCTCGGTCAGCAGTGGCACTTACAAAATCCATGTCCTC AACCAGGCGTCGAATGAGTGGTATGAGATGGAGGACCTGCACGTGATTACCGTTTTACCG CAGCTGGTTCTCCTGCCCGAGTCCTGTGTGCAGCTGTATCAGCGCCAGGATGTGCAGCTC AACGGGGAGCTCCCCTAG
Download Fasta

Fasta :-

MEKKARKKNPGDKAHAGNKRGGKKKESYSGGVEEVEQVDQDGEGEGAEQATATTATNPTS PTSPTSPTSVSNSAEARLVPRGAGRGRGRVCPYLRTINRNLLDFDFEKLCSISMSNLHVY ACLVCGMYFQGIGKGTYAYTHALEKNHYVFINLESCKTCCLPENYEIEDASLNDIKYFLK PMYTVEQVEYICRNSILGKSLDGADFFPGFVGLNNLKHTDYCNVIIQLVCSIIPLRNFFL VFETKKYMAKNIISSLSELIKKIYNPRNFKGVVSPHEFLQTVGIESKKNFKIGSQNDPLD FFLWLISKIHRYEERALRKGVKGKAAKKRKVAHGGGSEQREEEGGEGEEDEEDEGGKILP GHHLSQLNSMLSSSSESHTSEEAAPGMDAATKRKRKKKKKKKKKWKYHKVNIIDYCFDGE LIVKTKKKKKKKKRSEGDDHMNSAHNTKKREQNDTYSERNAREDAKFSHHLDNEEGEEDD VSDEDDEDDIDPAEGEELNGKKNYVTEKIPFRTLSLKLPNPPIFKSTTESNIIPQVSIFE LLTKFDGETESFLNEKSEPSTLIISKLPKYLVFTIKRFSRNNFFVEKNGTIVNFVIKNLD MKDYVHEDYLEKNPVTKYNLIANIFHSGSVSSGTYKIHVLNQASNEWYEMEDLHVITVLP QLVLLPESCVQLYQRQDVQLNGELP

Zf-UBP

title: Active Site
coordinates: N215,D220,T634,D652

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	PVX_122670	T	65	0.723	0.649	PVX_122670	T	59	0.714	0.610	PVX_122670	T	56	0.709	0.092	PVX_122670	T	62	0.707	0.649	PVX_122670	T	68	0.692	0.488	PVX_122670	T	54	0.678	0.242	PVX_122670	T	53	0.674	0.176	PVX_122670	S	60	0.624	0.030	PVX_122670	T	51	0.623	0.067	PVX_122670	S	66	0.611	0.030	PVX_122670	S	63	0.599	0.036	PVX_122670	S	69	0.572	0.022	PVX_122670	S	71	0.529	0.100	PVX_122670	S	73	0.513	0.032

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	PVX_122670	T	65	0.723	0.649	PVX_122670	T	59	0.714	0.610	PVX_122670	T	56	0.709	0.092	PVX_122670	T	62	0.707	0.649	PVX_122670	T	68	0.692	0.488	PVX_122670	T	54	0.678	0.242	PVX_122670	T	53	0.674	0.176	PVX_122670	S	60	0.624	0.030	PVX_122670	T	51	0.623	0.067	PVX_122670	S	66	0.611	0.030	PVX_122670	S	63	0.599	0.036	PVX_122670	S	69	0.572	0.022	PVX_122670	S	71	0.529	0.100	PVX_122670	S	73	0.513	0.032

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	PVX_122670	69 S	TSPTSVSNS	0.992	unsp	PVX_122670	69 S	TSPTSVSNS	0.992	unsp	PVX_122670	69 S	TSPTSVSNS	0.992	unsp	PVX_122670	274 S	KGVVSPHEF	0.992	unsp	PVX_122670	286 S	VGIESKKNF	0.991	unsp	PVX_122670	377 S	SSSESHTSE	0.994	unsp	PVX_122670	380 S	ESHTSEEAA	0.993	unsp	PVX_122670	435 S	KKKRSEGDD	0.998	unsp	PVX_122670	482 S	EDDVSDEDD	0.998	unsp	PVX_122670	579 S	IKRFSRNNF	0.993	unsp	PVX_122670	27 S	KKKESYSGG	0.994	unsp	PVX_122670	63 S	TSPTSPTSP	0.994	unsp

PVX_122670

PVX_122670 | U4/U6.U5 tri-snRNP-associated protein 2, putative

ID's

UniProt_ID: A5JZF9

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0004197 GO:0004221 GO:0036459 GO:0008270

Computed_GO_Functions: cysteine-type endopeptidase activity obsolete ubiquitin thiolesterase activity thiol-dependent ubiquitinyl hydrolase activity zinc ion binding

Computed_GO_Process_IDs: GO:0016579 GO:0006511

Computed_GO_Processes: protein deubiquitination ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Zf-UBP

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India