PY17X_0614500 | ATP-dependent Clp protease proteolytic subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:  GO:0020011      

  • Curated_GO_Components:  apicoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PY17X_0614500SP0.0425020.9566800.000817CS pos: 17-18. CVC-KK. Pr: 0.8657
No Results

  • Fasta :-

    >PY17X_0614500 MHSFWIFIINFIYFCVCKKKKYITPSNFIISQTNNIRYKNKLRYYNNEYLKQNINIPSLL LSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIVNLNGITDV ISIIDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLKQSYSIIPFNQA TNIEIQNKEIMNTKKKVIDIIAKNTEKDNNIISEILDRDRYFNANEASDFNLIDHILEKQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_0614500.fa Sequence name : PY17X_0614500 Sequence length : 240 VALUES OF COMPUTED PARAMETERS Coef20 : 4.358 CoefTot : -3.209 ChDiff : 9 ZoneTo : 77 KR : 11 DE : 1 CleavSite : 74 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.835 1.800 0.265 0.731 MesoH : -0.395 0.393 -0.248 0.234 MuHd_075 : 28.883 21.890 8.403 7.506 MuHd_095 : 31.204 20.922 9.547 6.050 MuHd_100 : 23.877 20.261 7.442 5.168 MuHd_105 : 25.579 18.854 8.597 6.357 Hmax_075 : 7.200 9.800 6.210 4.440 Hmax_095 : 12.800 19.100 2.499 4.760 Hmax_100 : -1.800 20.800 -2.596 5.490 Hmax_105 : 13.500 15.200 3.296 5.630 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1525 0.8475 DFMC : 0.3059 0.6941 This protein is probably imported in mitochondria. f(Ser) = 0.1039 f(Arg) = 0.0390 CMi = 0.83420 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 240 PY17X_0614500 MHSFWIFIINFIYFCVCKKKKYITPSNFIISQTNNIRYKNKLRYYNNEYLKQNINIPSLLLSKRIIFLSSPIYPHISEQI 80 ISQLLYLEYESKRKPIHLYINSTGDLENNKIVNLNGITDVISIIDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFS 160 LKNSSFCLKQSYSIIPFNQATNIEIQNKEIMNTKKKVIDIIAKNTEKDNNIISEILDRDRYFNANEASDFNLIDHILEKQ 240 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_0614500 18 IYFCVCK|KK 0.062 . PY17X_0614500 19 YFCVCKK|KK 0.079 . PY17X_0614500 20 FCVCKKK|KY 0.091 . PY17X_0614500 21 CVCKKKK|YI 0.160 . PY17X_0614500 37 SQTNNIR|YK 0.085 . PY17X_0614500 39 TNNIRYK|NK 0.070 . PY17X_0614500 41 NIRYKNK|LR 0.067 . PY17X_0614500 43 RYKNKLR|YY 0.089 . PY17X_0614500 51 YNNEYLK|QN 0.063 . PY17X_0614500 63 PSLLLSK|RI 0.051 . PY17X_0614500 64 SLLLSKR|II 0.149 . PY17X_0614500 92 YLEYESK|RK 0.057 . PY17X_0614500 93 LEYESKR|KP 0.119 . PY17X_0614500 94 EYESKRK|PI 0.085 . PY17X_0614500 110 GDLENNK|IV 0.065 . PY17X_0614500 141 YTYCLGK|AY 0.063 . PY17X_0614500 154 ILASSGK|KG 0.058 . PY17X_0614500 155 LASSGKK|GY 0.116 . PY17X_0614500 158 SGKKGYR|FS 0.085 . PY17X_0614500 162 GYRFSLK|NS 0.084 . PY17X_0614500 169 NSSFCLK|QS 0.076 . PY17X_0614500 188 NIEIQNK|EI 0.063 . PY17X_0614500 194 KEIMNTK|KK 0.058 . PY17X_0614500 195 EIMNTKK|KV 0.163 . PY17X_0614500 196 IMNTKKK|VI 0.152 . PY17X_0614500 203 VIDIIAK|NT 0.066 . PY17X_0614500 207 IAKNTEK|DN 0.068 . PY17X_0614500 218 ISEILDR|DR 0.083 . PY17X_0614500 220 EILDRDR|YF 0.090 . PY17X_0614500 239 IDHILEK|Q- 0.069 . ____________________________^_________________

  • Fasta :-

    >PY17X_0614500 ATGCATTCATTTTGGATCTTTATAATAAATTTTATATATTTTTGTGTATGTAAAAAAAAA AAATATATAACCCCATCAAATTTTATTATATCTCAAACTAATAACATACGATATAAGAAT AAACTAAGATATTATAATAATGAATATTTAAAACAAAATATTAATATACCATCTTTATTA TTATCAAAAAGAATAATATTTTTATCATCTCCTATATATCCTCATATATCAGAACAAATA ATATCTCAGCTATTGTATTTAGAATATGAATCAAAAAGGAAGCCAATTCATTTATATATT AACAGTACAGGTGATTTAGAAAATAATAAAATTGTTAACTTAAATGGAATTACAGATGTA ATATCAATAATTGATGTAATTAACTATATATCATCAGATGTGTACACATATTGTTTAGGT AAGGCATATGGTATTGCATGTATATTAGCTAGTAGTGGAAAAAAAGGATATCGTTTTTCT TTAAAAAATTCATCTTTTTGTTTAAAACAATCTTATTCTATTATACCTTTTAATCAAGCA ACAAATATTGAAATTCAAAATAAAGAAATAATGAACACTAAAAAAAAAGTTATAGATATA ATTGCAAAAAATACAGAAAAAGATAATAACATTATTTCAGAAATATTAGATAGAGATAGA TATTTCAATGCCAATGAAGCTTCTGATTTTAATTTGATAGATCATATTTTGGAAAAACAA TAA
  • Download Fasta

  • Fasta :-

    MHSFWIFIINFIYFCVCKKKKYITPSNFIISQTNNIRYKNKLRYYNNEYLKQNINIPSLL LSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIVNLNGITDV ISIIDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLKQSYSIIPFNQA TNIEIQNKEIMNTKKKVIDIIAKNTEKDNNIISEILDRDRYFNANEASDFNLIDHILEKQ

  • title: active site residues
  • coordinates: G144,K169,D219
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PY17X_0614500


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India