PY17X_0822600 | eukaryotic translation initiation factor 3 subunit F, putative

_IDPredictionOTHERSPmTPCS_Position
PY17X_0822600OTHER0.9911860.0001520.008661
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  • Fasta :-

    >PY17X_0822600 MSINRYSFKTMSSMLKDKTPQYFDIQPHTNIKCIVHPSVIFTILDSYLRRDEDQTHVIGT LMGSIIDTNLVEISDCFVDKHSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGS ELSELSCAVHGWFKEHNSISKFYPHSPLNEPIHLLVDASLESGFLNVKAYVQLPINLVKE YFVHFHEIQIELLPCNIERADVAKITEKITKGGDKEKLLNNEIDENSLKKLLIMLKNCKS YVQDIVDKKKKGNVAIGRYLHKVFSNDPFISVEKFDSINESILQDNLMISYLSNLAHLQF LIAEKLNTSSMQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_0822600.fa Sequence name : PY17X_0822600 Sequence length : 312 VALUES OF COMPUTED PARAMETERS Coef20 : 4.222 CoefTot : 0.188 ChDiff : -5 ZoneTo : 16 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.365 0.063 0.544 MesoH : -0.498 0.205 -0.449 0.240 MuHd_075 : 13.955 4.767 3.909 2.469 MuHd_095 : 31.649 18.437 7.842 6.766 MuHd_100 : 24.213 14.365 5.326 5.432 MuHd_105 : 16.988 9.311 3.333 3.851 Hmax_075 : -0.000 1.283 -1.381 0.980 Hmax_095 : 9.400 7.900 -0.069 3.200 Hmax_100 : 0.300 3.900 -1.903 1.320 Hmax_105 : 3.237 3.587 -1.770 1.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5738 0.4262 DFMC : 0.6018 0.3982
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 312 PY17X_0822600 MSINRYSFKTMSSMLKDKTPQYFDIQPHTNIKCIVHPSVIFTILDSYLRRDEDQTHVIGTLMGSIIDTNLVEISDCFVDK 80 HSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGSELSELSCAVHGWFKEHNSISKFYPHSPLNEPIHLLVDASL 160 ESGFLNVKAYVQLPINLVKEYFVHFHEIQIELLPCNIERADVAKITEKITKGGDKEKLLNNEIDENSLKKLLIMLKNCKS 240 YVQDIVDKKKKGNVAIGRYLHKVFSNDPFISVEKFDSINESILQDNLMISYLSNLAHLQFLIAEKLNTSSMQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_0822600 5 --MSINR|YS 0.097 . PY17X_0822600 9 INRYSFK|TM 0.082 . PY17X_0822600 16 TMSSMLK|DK 0.094 . PY17X_0822600 18 SSMLKDK|TP 0.062 . PY17X_0822600 32 QPHTNIK|CI 0.062 . PY17X_0822600 49 ILDSYLR|RD 0.078 . PY17X_0822600 50 LDSYLRR|DE 0.236 . PY17X_0822600 80 SDCFVDK|HS 0.072 . PY17X_0822600 93 GFLQIIK|DH 0.063 . PY17X_0822600 103 ETMYELK|QK 0.065 . PY17X_0822600 105 MYELKQK|IR 0.060 . PY17X_0822600 107 ELKQKIR|PR 0.119 . PY17X_0822600 109 KQKIRPR|DQ 0.125 . PY17X_0822600 134 AVHGWFK|EH 0.057 . PY17X_0822600 141 EHNSISK|FY 0.068 . PY17X_0822600 168 SGFLNVK|AY 0.058 . PY17X_0822600 179 LPINLVK|EY 0.072 . PY17X_0822600 199 LPCNIER|AD 0.101 . PY17X_0822600 204 ERADVAK|IT 0.115 . PY17X_0822600 208 VAKITEK|IT 0.064 . PY17X_0822600 211 ITEKITK|GG 0.067 . PY17X_0822600 215 ITKGGDK|EK 0.054 . PY17X_0822600 217 KGGDKEK|LL 0.070 . PY17X_0822600 229 IDENSLK|KL 0.062 . PY17X_0822600 230 DENSLKK|LL 0.088 . PY17X_0822600 236 KLLIMLK|NC 0.056 . PY17X_0822600 239 IMLKNCK|SY 0.072 . PY17X_0822600 248 VQDIVDK|KK 0.057 . PY17X_0822600 249 QDIVDKK|KK 0.100 . PY17X_0822600 250 DIVDKKK|KG 0.093 . PY17X_0822600 251 IVDKKKK|GN 0.130 . PY17X_0822600 258 GNVAIGR|YL 0.140 . PY17X_0822600 262 IGRYLHK|VF 0.065 . PY17X_0822600 274 PFISVEK|FD 0.069 . PY17X_0822600 305 QFLIAEK|LN 0.058 . ____________________________^_________________

  • Fasta :-

    >PY17X_0822600 ATGAGTATAAATAGATATAGTTTTAAAACAATGAGTAGTATGCTGAAAGATAAAACACCT CAGTATTTTGATATACAACCACATACAAATATAAAATGTATTGTACATCCTTCTGTAATA TTTACAATTTTAGATTCATATTTAAGAAGAGATGAAGATCAAACTCATGTGATTGGAACA TTGATGGGATCTATTATTGATACTAATTTGGTTGAAATATCTGATTGCTTTGTTGATAAG CATTCGTTAAATGAGGGCGGTTTTTTGCAAATAATAAAAGATCATCATGAAACCATGTAT GAATTAAAACAAAAAATTCGTCCAAGAGATCAAGTTGTTGGGTGGTTTTGTTCAGGATCA GAATTATCAGAATTATCATGTGCGGTTCATGGATGGTTTAAAGAACATAATTCTATTTCT AAATTTTATCCACATTCTCCATTAAATGAACCTATACATTTATTAGTAGATGCATCATTA GAAAGTGGGTTCTTAAATGTTAAAGCATATGTACAATTACCTATTAATTTAGTTAAAGAA TATTTTGTTCATTTTCATGAAATTCAAATTGAATTATTACCATGCAATATTGAAAGAGCT GATGTTGCCAAAATAACTGAAAAAATAACAAAAGGTGGAGATAAAGAAAAATTATTAAAT AATGAAATTGATGAAAATTCATTAAAAAAATTATTAATTATGTTAAAAAATTGTAAATCA TATGTACAAGATATTGTTGATAAAAAAAAAAAAGGAAATGTAGCTATAGGAAGATATTTA CATAAAGTTTTTTCAAATGATCCTTTTATATCAGTAGAAAAATTTGATTCTATAAATGAA AGTATTTTACAAGATAATTTAATGATTTCATATTTATCAAATTTAGCACACTTACAATTT TTAATTGCTGAAAAATTAAATACCTCTTCTATGCAATAA
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PY17X_0822600


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India