PY17X_1221000 | signal peptidase complex subunit 2, putative

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  • Fasta :-

    >PY17X_1221000 MFSKKPQSENKDSTYIVKNLYSENELKKVTQDYLSEEIRNLNIYENVKYSNIRILLSIIL IIIGGYCCIFVNHKNEPILMIQFLAAFFSISIILYIWEYFYFEDYFMIIETNDNKAVKLF LKFDIKTSCLILNYKLNKTVYSTPFELMKLYNEQGYLMEDYARHTLKQFISNHGKNFKLT NKK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_1221000.fa Sequence name : PY17X_1221000 Sequence length : 183 VALUES OF COMPUTED PARAMETERS Coef20 : 3.471 CoefTot : -0.410 ChDiff : 4 ZoneTo : 8 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.335 2.812 0.736 0.936 MesoH : 0.223 1.094 -0.138 0.484 MuHd_075 : 18.745 14.488 5.470 5.185 MuHd_095 : 16.717 13.827 4.489 4.489 MuHd_100 : 23.262 15.381 7.308 5.824 MuHd_105 : 23.365 12.333 7.966 5.317 Hmax_075 : -2.700 2.900 -2.236 1.590 Hmax_095 : -3.325 3.150 -3.284 1.785 Hmax_100 : 3.700 2.100 -1.612 2.120 Hmax_105 : 2.217 2.333 -1.149 1.890 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9170 0.0830 DFMC : 0.9572 0.0428
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 183 PY17X_1221000 MFSKKPQSENKDSTYIVKNLYSENELKKVTQDYLSEEIRNLNIYENVKYSNIRILLSIILIIIGGYCCIFVNHKNEPILM 80 IQFLAAFFSISIILYIWEYFYFEDYFMIIETNDNKAVKLFLKFDIKTSCLILNYKLNKTVYSTPFELMKLYNEQGYLMED 160 YARHTLKQFISNHGKNFKLTNKK 240 ................................................................................ 80 ................................................................................ 160 ....................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_1221000 4 ---MFSK|KP 0.061 . PY17X_1221000 5 --MFSKK|PQ 0.121 . PY17X_1221000 11 KPQSENK|DS 0.085 . PY17X_1221000 18 DSTYIVK|NL 0.061 . PY17X_1221000 27 YSENELK|KV 0.073 . PY17X_1221000 28 SENELKK|VT 0.122 . PY17X_1221000 39 YLSEEIR|NL 0.113 . PY17X_1221000 48 NIYENVK|YS 0.058 . PY17X_1221000 53 VKYSNIR|IL 0.086 . PY17X_1221000 74 CIFVNHK|NE 0.056 . PY17X_1221000 115 IETNDNK|AV 0.062 . PY17X_1221000 118 NDNKAVK|LF 0.059 . PY17X_1221000 122 AVKLFLK|FD 0.059 . PY17X_1221000 126 FLKFDIK|TS 0.060 . PY17X_1221000 135 CLILNYK|LN 0.060 . PY17X_1221000 138 LNYKLNK|TV 0.072 . PY17X_1221000 149 TPFELMK|LY 0.070 . PY17X_1221000 163 LMEDYAR|HT 0.099 . PY17X_1221000 167 YARHTLK|QF 0.067 . PY17X_1221000 175 FISNHGK|NF 0.063 . PY17X_1221000 178 NHGKNFK|LT 0.070 . PY17X_1221000 182 NFKLTNK|K- 0.059 . PY17X_1221000 183 FKLTNKK|-- 0.091 . ____________________________^_________________

  • Fasta :-

    >PY17X_1221000 ATGTTTAGTAAAAAGCCCCAAAGTGAAAATAAAGATAGCACATACATTGTAAAAAATCTA TACAGTGAAAATGAGCTTAAAAAAGTTACACAGGATTACTTAAGTGAGGAAATAAGAAAC CTGAATATATATGAAAATGTTAAATATTCAAACATTAGGATTCTATTATCTATAATCCTG ATAATTATTGGAGGATATTGTTGTATTTTTGTCAATCACAAAAATGAGCCAATACTTATG ATACAATTTCTGGCTGCTTTTTTTTCTATATCAATAATATTATACATTTGGGAATATTTT TATTTTGAAGACTATTTCATGATAATAGAAACGAATGATAACAAAGCAGTAAAACTATTC TTAAAATTCGATATCAAGACGAGCTGTCTTATTTTAAATTACAAATTAAATAAAACAGTA TATTCTACACCTTTTGAGTTGATGAAATTATATAATGAACAAGGGTACCTTATGGAAGAT TATGCACGCCACACATTAAAGCAATTCATTTCAAATCATGGGAAAAATTTTAAATTAACA AATAAAAAATAA
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PY17X_1221000


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India