PY17X_1417200 | U4/U6.U5 tri-snRNP-associated protein 2, putative

_IDPredictionOTHERSPmTPCS_Position
PY17X_1417200OTHER0.9999940.0000020.000004
No Results

  • Fasta :-

    >PY17X_1417200 MPRKPAKKIKNDDDDGVAPKRRKNKEKQENEKINNSLETETNVKNNLNKTEQTDNNINDK TESHNKTTKNNENNNIDNTSDNNKIRVCPYLRTINRNLLDFDFEKLCSISLSNLHVYACL VCGIYFQGIGRGTYAYTHALEKNHYVFINLETCKTCCIPENYEIHDASLNDIKYFLKPVY NKEQVEHLCNNLILGKSLDGADFFPGCVGLNNLKHTDYCNVIIQLLCCIVPLRNMLLLYE SKQNIAKNLIVVLAELLKKIYNPKNFKGVVSPHEFLQAVGIESKKNFKIGTKNDPLNFFL WIINKIHRHSEKKLQKKKKNIPNQANKQNNLIANNNISKNAHPKNDEGEKNYTSTKKDHD KENNNAEQNKQDTNYESDKSSSHKKKKIKWMYDDINIIDYCFDGELIIKTKKTKDDMTEE GTHYDGKNDTTGSTNYIAHNQNDNSQYEDDNEFSENKNYIFKKTPFRTLSLKLPNPPIFK STTESNIIPQVSIFELLTKYDGETETFLSDKATPSTLIISKLPKYLIFTIQRFSKNNFFT EKNGTIVNFVIKNLDMKDYVHQDYLDQNPVTKYNLVANIFHSGTVTNGSYKIHVLQQATN EWYEIEDLHVISILPQLVLLPESCIQLYQRQDVQLNGEIL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_1417200.fa Sequence name : PY17X_1417200 Sequence length : 640 VALUES OF COMPUTED PARAMETERS Coef20 : 2.683 CoefTot : -0.816 ChDiff : 5 ZoneTo : 11 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.224 2.041 0.334 0.606 MesoH : -0.554 0.627 -0.298 0.258 MuHd_075 : 22.218 3.783 4.212 3.455 MuHd_095 : 37.633 20.453 10.425 8.382 MuHd_100 : 32.725 15.750 9.825 7.115 MuHd_105 : 24.377 10.272 8.242 5.383 Hmax_075 : -12.600 -4.375 -5.647 -0.192 Hmax_095 : 1.838 4.637 -0.831 3.133 Hmax_100 : -1.300 3.400 -1.086 2.940 Hmax_105 : -4.550 -0.933 -2.108 2.147 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9540 0.0460 DFMC : 0.9670 0.0330
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 640 PY17X_1417200 MPRKPAKKIKNDDDDGVAPKRRKNKEKQENEKINNSLETETNVKNNLNKTEQTDNNINDKTESHNKTTKNNENNNIDNTS 80 DNNKIRVCPYLRTINRNLLDFDFEKLCSISLSNLHVYACLVCGIYFQGIGRGTYAYTHALEKNHYVFINLETCKTCCIPE 160 NYEIHDASLNDIKYFLKPVYNKEQVEHLCNNLILGKSLDGADFFPGCVGLNNLKHTDYCNVIIQLLCCIVPLRNMLLLYE 240 SKQNIAKNLIVVLAELLKKIYNPKNFKGVVSPHEFLQAVGIESKKNFKIGTKNDPLNFFLWIINKIHRHSEKKLQKKKKN 320 IPNQANKQNNLIANNNISKNAHPKNDEGEKNYTSTKKDHDKENNNAEQNKQDTNYESDKSSSHKKKKIKWMYDDINIIDY 400 CFDGELIIKTKKTKDDMTEEGTHYDGKNDTTGSTNYIAHNQNDNSQYEDDNEFSENKNYIFKKTPFRTLSLKLPNPPIFK 480 STTESNIIPQVSIFELLTKYDGETETFLSDKATPSTLIISKLPKYLIFTIQRFSKNNFFTEKNGTIVNFVIKNLDMKDYV 560 HQDYLDQNPVTKYNLVANIFHSGTVTNGSYKIHVLQQATNEWYEIEDLHVISILPQLVLLPESCIQLYQRQDVQLNGEIL 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_1417200 3 ----MPR|KP 0.086 . PY17X_1417200 4 ---MPRK|PA 0.100 . PY17X_1417200 7 MPRKPAK|KI 0.081 . PY17X_1417200 8 PRKPAKK|IK 0.116 . PY17X_1417200 10 KPAKKIK|ND 0.106 . PY17X_1417200 20 DDGVAPK|RR 0.064 . PY17X_1417200 21 DGVAPKR|RK 0.122 . PY17X_1417200 22 GVAPKRR|KN 0.192 . PY17X_1417200 23 VAPKRRK|NK 0.111 . PY17X_1417200 25 PKRRKNK|EK 0.203 . PY17X_1417200 27 RRKNKEK|QE 0.099 . PY17X_1417200 32 EKQENEK|IN 0.067 . PY17X_1417200 44 ETETNVK|NN 0.056 . PY17X_1417200 49 VKNNLNK|TE 0.063 . PY17X_1417200 60 DNNINDK|TE 0.069 . PY17X_1417200 66 KTESHNK|TT 0.064 . PY17X_1417200 69 SHNKTTK|NN 0.072 . PY17X_1417200 84 NTSDNNK|IR 0.053 . PY17X_1417200 86 SDNNKIR|VC 0.104 . PY17X_1417200 92 RVCPYLR|TI 0.082 . PY17X_1417200 96 YLRTINR|NL 0.081 . PY17X_1417200 105 LDFDFEK|LC 0.069 . PY17X_1417200 131 YFQGIGR|GT 0.102 . PY17X_1417200 142 YTHALEK|NH 0.058 . PY17X_1417200 154 INLETCK|TC 0.061 . PY17X_1417200 173 ASLNDIK|YF 0.058 . PY17X_1417200 177 DIKYFLK|PV 0.077 . PY17X_1417200 182 LKPVYNK|EQ 0.058 . PY17X_1417200 196 NNLILGK|SL 0.080 . PY17X_1417200 214 VGLNNLK|HT 0.059 . PY17X_1417200 233 CCIVPLR|NM 0.065 . PY17X_1417200 242 LLLYESK|QN 0.062 . PY17X_1417200 247 SKQNIAK|NL 0.079 . PY17X_1417200 258 VLAELLK|KI 0.056 . PY17X_1417200 259 LAELLKK|IY 0.087 . PY17X_1417200 264 KKIYNPK|NF 0.066 . PY17X_1417200 267 YNPKNFK|GV 0.064 . PY17X_1417200 284 AVGIESK|KN 0.063 . PY17X_1417200 285 VGIESKK|NF 0.088 . PY17X_1417200 288 ESKKNFK|IG 0.061 . PY17X_1417200 292 NFKIGTK|ND 0.052 . PY17X_1417200 305 FLWIINK|IH 0.061 . PY17X_1417200 308 IINKIHR|HS 0.136 . PY17X_1417200 312 IHRHSEK|KL 0.077 . PY17X_1417200 313 HRHSEKK|LQ 0.113 . PY17X_1417200 316 SEKKLQK|KK 0.067 . PY17X_1417200 317 EKKLQKK|KK 0.089 . PY17X_1417200 318 KKLQKKK|KN 0.109 . PY17X_1417200 319 KLQKKKK|NI 0.159 . PY17X_1417200 327 IPNQANK|QN 0.068 . PY17X_1417200 339 ANNNISK|NA 0.079 . PY17X_1417200 344 SKNAHPK|ND 0.087 . PY17X_1417200 350 KNDEGEK|NY 0.057 . PY17X_1417200 356 KNYTSTK|KD 0.074 . PY17X_1417200 357 NYTSTKK|DH 0.124 . PY17X_1417200 361 TKKDHDK|EN 0.083 . PY17X_1417200 370 NNAEQNK|QD 0.076 . PY17X_1417200 379 TNYESDK|SS 0.107 . PY17X_1417200 384 DKSSSHK|KK 0.073 . PY17X_1417200 385 KSSSHKK|KK 0.147 . PY17X_1417200 386 SSSHKKK|KI 0.258 . PY17X_1417200 387 SSHKKKK|IK 0.158 . PY17X_1417200 389 HKKKKIK|WM 0.084 . PY17X_1417200 409 DGELIIK|TK 0.059 . PY17X_1417200 411 ELIIKTK|KT 0.069 . PY17X_1417200 412 LIIKTKK|TK 0.103 . PY17X_1417200 414 IKTKKTK|DD 0.100 . PY17X_1417200 427 GTHYDGK|ND 0.069 . PY17X_1417200 457 NEFSENK|NY 0.056 . PY17X_1417200 462 NKNYIFK|KT 0.061 . PY17X_1417200 463 KNYIFKK|TP 0.109 . PY17X_1417200 467 FKKTPFR|TL 0.102 . PY17X_1417200 472 FRTLSLK|LP 0.058 . PY17X_1417200 480 PNPPIFK|ST 0.076 . PY17X_1417200 499 IFELLTK|YD 0.072 . PY17X_1417200 511 ETFLSDK|AT 0.062 . PY17X_1417200 521 STLIISK|LP 0.056 . PY17X_1417200 524 IISKLPK|YL 0.076 . PY17X_1417200 532 LIFTIQR|FS 0.094 . PY17X_1417200 535 TIQRFSK|NN 0.150 . PY17X_1417200 542 NNFFTEK|NG 0.064 . PY17X_1417200 552 IVNFVIK|NL 0.070 . PY17X_1417200 557 IKNLDMK|DY 0.072 . PY17X_1417200 572 DQNPVTK|YN 0.069 . PY17X_1417200 591 VTNGSYK|IH 0.061 . PY17X_1417200 630 CIQLYQR|QD 0.081 . ____________________________^_________________

  • Fasta :-

    >PY17X_1417200 ATGCCGAGAAAACCCGCAAAAAAAATAAAAAATGACGATGATGATGGAGTAGCTCCAAAA AGGAGGAAAAACAAAGAGAAACAGGAAAATGAAAAAATTAATAATTCATTGGAAACTGAA ACTAATGTAAAAAATAATTTAAATAAAACAGAACAAACTGATAATAATATAAATGACAAA ACCGAATCACATAATAAAACAACCAAGAATAATGAAAATAATAATATTGATAATACTAGT GACAATAATAAAATTAGAGTATGTCCTTATTTAAGAACAATAAACAGAAATTTGCTTGAT TTTGATTTTGAAAAATTATGTAGTATTTCTTTGTCCAATTTACATGTATATGCATGTTTA GTATGTGGCATATATTTTCAAGGAATCGGAAGAGGAACATATGCATATACACACGCATTA GAAAAAAACCATTATGTTTTTATAAATTTAGAAACTTGCAAAACTTGCTGTATTCCTGAA AATTATGAAATTCATGATGCTTCATTAAATGATATAAAATATTTTTTAAAACCTGTTTAT AATAAAGAGCAAGTAGAACATTTATGTAATAATTTAATTTTAGGAAAATCTTTAGACGGT GCTGATTTTTTTCCAGGATGTGTAGGTTTAAATAATTTAAAGCATACAGATTATTGTAAT GTAATTATACAGTTATTATGTTGTATTGTACCTTTAAGAAATATGTTATTATTATATGAA AGTAAGCAAAATATTGCAAAAAATTTAATAGTTGTTTTAGCAGAATTGCTAAAAAAAATA TATAATCCAAAAAATTTTAAAGGAGTTGTATCACCTCATGAATTTTTACAAGCAGTAGGT ATTGAATCAAAAAAAAATTTTAAAATTGGTACAAAAAACGATCCACTAAACTTTTTTTTA TGGATTATTAATAAAATTCATAGACATTCAGAAAAAAAATTACAAAAAAAAAAAAAAAAT ATACCCAATCAAGCAAACAAACAAAATAATCTAATAGCTAATAACAATATTTCGAAAAAC GCGCATCCCAAAAATGATGAAGGTGAGAAAAATTATACAAGTACTAAAAAGGACCATGAC AAGGAAAATAACAATGCAGAACAAAATAAACAAGATACAAATTATGAATCGGATAAAAGT AGTAGTCATAAGAAAAAGAAGATAAAATGGATGTATGATGACATAAATATTATTGATTAT TGTTTTGATGGAGAGTTAATTATTAAAACTAAAAAAACAAAAGATGATATGACAGAAGAA GGTACACACTATGATGGAAAAAATGATACTACAGGAAGCACTAATTACATTGCCCATAAC CAAAATGATAATAGCCAATATGAAGATGATAATGAATTTAGTGAAAACAAAAACTATATA TTTAAGAAAACCCCATTTCGTACTTTATCTTTAAAATTGCCTAATCCTCCAATATTTAAA AGCACAACCGAAAGTAACATAATACCTCAAGTATCTATTTTTGAGTTATTAACAAAATAT GATGGAGAAACAGAAACCTTTTTGTCAGATAAAGCAACCCCAAGTACATTAATTATTTCA AAATTGCCAAAATATTTAATTTTTACCATACAAAGATTTTCAAAAAATAATTTTTTTACG GAAAAAAATGGAACTATTGTTAATTTTGTTATCAAAAATCTCGATATGAAAGATTATGTA CATCAAGATTATCTTGACCAAAACCCAGTAACAAAATATAATTTAGTTGCAAATATATTT CATAGCGGTACTGTTACTAATGGCTCATATAAAATACATGTTTTACAACAAGCTACAAAC GAATGGTATGAAATCGAGGATCTACATGTTATTTCGATTTTACCACAACTCGTTTTATTG CCAGAATCATGTATTCAGTTATATCAGCGTCAAGATGTTCAGTTAAATGGAGAGATACTA TAA
  • Download Fasta

  • Fasta :-

    MPRKPAKKIKNDDDDGVAPKRRKNKEKQENEKINNSLETETNVKNNLNKTEQTDNNINDK TESHNKTTKNNENNNIDNTSDNNKIRVCPYLRTINRNLLDFDFEKLCSISLSNLHVYACL VCGIYFQGIGRGTYAYTHALEKNHYVFINLETCKTCCIPENYEIHDASLNDIKYFLKPVY NKEQVEHLCNNLILGKSLDGADFFPGCVGLNNLKHTDYCNVIIQLLCCIVPLRNMLLLYE SKQNIAKNLIVVLAELLKKIYNPKNFKGVVSPHEFLQAVGIESKKNFKIGTKNDPLNFFL WIINKIHRHSEKKLQKKKKNIPNQANKQNNLIANNNISKNAHPKNDEGEKNYTSTKKDHD KENNNAEQNKQDTNYESDKSSSHKKKKIKWMYDDINIIDYCFDGELIIKTKKTKDDMTEE GTHYDGKNDTTGSTNYIAHNQNDNSQYEDDNEFSENKNYIFKKTPFRTLSLKLPNPPIFK STTESNIIPQVSIFELLTKYDGETETFLSDKATPSTLIISKLPKYLIFTIQRFSKNNFFT EKNGTIVNFVIKNLDMKDYVHQDYLDQNPVTKYNLVANIFHSGTVTNGSYKIHVLQQATN EWYEIEDLHVISILPQLVLLPESCIQLYQRQDVQLNGEIL

  • title: Active Site
  • coordinates: N212,D217,S589,D607
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PY17X_1417200382 SDKSSSHKKK0.996unspPY17X_1417200382 SDKSSSHKKK0.996unspPY17X_1417200382 SDKSSSHKKK0.996unspPY17X_1417200509 SETFLSDKAT0.993unspPY17X_1417200271 SKGVVSPHEF0.992unspPY17X_1417200310 SIHRHSEKKL0.997unsp
PY17X_1417200


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India