PY17X_1420400 | microsomal signal peptidase, putative

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  • Fasta :-

    >PY17X_1420400 MNRYYHYIRNIYSSKCFKNESFFYSKINLKFVSYNTKNDTHKYSAKINNGYTFRKNVNLK KIKNFPKSINNMPHSCYRTYLLKKYGLTKRREGYNINKDNIKRYFNFVRIYHSLNFIKNI ILCLLFIYGVNNYVFDMTLTSGSSMYPLINKNGVILFYICDCSLRFFNELRNIAIYNYIN ILYKIYNIIHRNFDNINFVKVKNTIANKIENLKNQIKSNKHVYKRGDVVLLISPVNSNKR VCKRIIGMEHDKLFVNDFNSFVEIPKNHIWVEGDNKLDSFDSRNYGCVNINLVIGKIFFL LDPFRSFSFITNKRNYEIESNKFLYMSN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_1420400.fa Sequence name : PY17X_1420400 Sequence length : 328 VALUES OF COMPUTED PARAMETERS Coef20 : 3.731 CoefTot : -4.901 ChDiff : 31 ZoneTo : 91 KR : 21 DE : 2 CleavSite : 92 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.029 1.935 0.151 0.675 MesoH : -0.051 0.754 -0.189 0.348 MuHd_075 : 37.337 25.345 13.251 8.623 MuHd_095 : 47.671 28.994 15.555 10.409 MuHd_100 : 52.441 33.367 17.144 11.186 MuHd_105 : 49.513 35.535 17.337 10.771 Hmax_075 : 11.700 12.017 3.456 4.515 Hmax_095 : 14.400 13.300 3.474 5.310 Hmax_100 : 17.100 14.700 4.109 5.170 Hmax_105 : 18.700 19.200 4.815 6.150 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0530 0.9470 DFMC : 0.0781 0.9219 This protein is probably imported in mitochondria. f(Ser) = 0.0879 f(Arg) = 0.0659 CMi = 0.54164 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 328 PY17X_1420400 MNRYYHYIRNIYSSKCFKNESFFYSKINLKFVSYNTKNDTHKYSAKINNGYTFRKNVNLKKIKNFPKSINNMPHSCYRTY 80 LLKKYGLTKRREGYNINKDNIKRYFNFVRIYHSLNFIKNIILCLLFIYGVNNYVFDMTLTSGSSMYPLINKNGVILFYIC 160 DCSLRFFNELRNIAIYNYINILYKIYNIIHRNFDNINFVKVKNTIANKIENLKNQIKSNKHVYKRGDVVLLISPVNSNKR 240 VCKRIIGMEHDKLFVNDFNSFVEIPKNHIWVEGDNKLDSFDSRNYGCVNINLVIGKIFFLLDPFRSFSFITNKRNYEIES 320 NKFLYMSN 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_1420400 3 ----MNR|YY 0.111 . PY17X_1420400 9 RYYHYIR|NI 0.086 . PY17X_1420400 15 RNIYSSK|CF 0.063 . PY17X_1420400 18 YSSKCFK|NE 0.064 . PY17X_1420400 26 ESFFYSK|IN 0.057 . PY17X_1420400 30 YSKINLK|FV 0.079 . PY17X_1420400 37 FVSYNTK|ND 0.065 . PY17X_1420400 42 TKNDTHK|YS 0.093 . PY17X_1420400 46 THKYSAK|IN 0.077 . PY17X_1420400 54 NNGYTFR|KN 0.078 . PY17X_1420400 55 NGYTFRK|NV 0.087 . PY17X_1420400 60 RKNVNLK|KI 0.072 . PY17X_1420400 61 KNVNLKK|IK 0.077 . PY17X_1420400 63 VNLKKIK|NF 0.067 . PY17X_1420400 67 KIKNFPK|SI 0.114 . PY17X_1420400 78 MPHSCYR|TY 0.084 . PY17X_1420400 83 YRTYLLK|KY 0.060 . PY17X_1420400 84 RTYLLKK|YG 0.101 . PY17X_1420400 89 KKYGLTK|RR 0.062 . PY17X_1420400 90 KYGLTKR|RE 0.134 . PY17X_1420400 91 YGLTKRR|EG 0.106 . PY17X_1420400 98 EGYNINK|DN 0.067 . PY17X_1420400 102 INKDNIK|RY 0.061 . PY17X_1420400 103 NKDNIKR|YF 0.164 . PY17X_1420400 109 RYFNFVR|IY 0.089 . PY17X_1420400 118 HSLNFIK|NI 0.067 . PY17X_1420400 151 MYPLINK|NG 0.050 . PY17X_1420400 165 ICDCSLR|FF 0.086 . PY17X_1420400 171 RFFNELR|NI 0.080 . PY17X_1420400 184 YINILYK|IY 0.071 . PY17X_1420400 191 IYNIIHR|NF 0.095 . PY17X_1420400 200 DNINFVK|VK 0.062 . PY17X_1420400 202 INFVKVK|NT 0.071 . PY17X_1420400 208 KNTIANK|IE 0.054 . PY17X_1420400 213 NKIENLK|NQ 0.061 . PY17X_1420400 217 NLKNQIK|SN 0.081 . PY17X_1420400 220 NQIKSNK|HV 0.096 . PY17X_1420400 224 SNKHVYK|RG 0.083 . PY17X_1420400 225 NKHVYKR|GD 0.222 . PY17X_1420400 239 SPVNSNK|RV 0.084 . PY17X_1420400 240 PVNSNKR|VC 0.175 . PY17X_1420400 243 SNKRVCK|RI 0.241 . PY17X_1420400 244 NKRVCKR|II 0.329 . PY17X_1420400 252 IGMEHDK|LF 0.061 . PY17X_1420400 266 SFVEIPK|NH 0.065 . PY17X_1420400 276 WVEGDNK|LD 0.056 . PY17X_1420400 283 LDSFDSR|NY 0.127 . PY17X_1420400 296 INLVIGK|IF 0.060 . PY17X_1420400 305 FLLDPFR|SF 0.112 . PY17X_1420400 313 FSFITNK|RN 0.065 . PY17X_1420400 314 SFITNKR|NY 0.145 . PY17X_1420400 322 YEIESNK|FL 0.068 . ____________________________^_________________

  • Fasta :-

    >PY17X_1420400 ATGAATAGATATTATCATTATATAAGAAATATATACTCGTCAAAATGTTTTAAAAATGAA AGTTTTTTCTATAGTAAGATTAATCTGAAATTCGTTAGTTATAATACAAAAAATGACACA CATAAATACTCAGCTAAAATTAATAATGGATATACATTTCGGAAAAATGTAAATTTAAAA AAAATAAAAAATTTCCCCAAAAGTATTAATAATATGCCACATTCATGTTATAGAACATAT TTATTAAAGAAATATGGATTAACAAAAAGACGAGAAGGATATAATATAAATAAAGATAAT ATTAAGAGATATTTTAATTTTGTTAGAATTTATCATTCATTAAATTTTATAAAAAATATA ATATTATGTTTGTTGTTTATTTATGGGGTAAATAATTACGTTTTTGACATGACACTTACT AGTGGTTCTAGTATGTATCCATTAATAAATAAAAATGGGGTAATTTTATTTTATATTTGT GATTGCTCTTTACGATTTTTTAACGAACTCCGGAATATTGCAATATATAATTATATAAAT ATATTATATAAAATTTATAATATTATTCATAGAAATTTTGATAACATAAATTTTGTAAAA GTTAAAAACACAATAGCAAATAAAATTGAGAATTTAAAAAATCAAATAAAATCAAATAAA CATGTCTATAAAAGAGGTGATGTTGTATTGCTAATATCACCAGTTAATAGTAATAAAAGA GTATGTAAGAGGATTATTGGAATGGAACATGATAAATTATTTGTAAATGATTTTAATTCA TTTGTTGAAATTCCAAAAAATCATATATGGGTAGAGGGCGATAATAAACTGGATTCTTTT GATAGTAGAAATTATGGGTGTGTAAATATAAATTTGGTAATTGGAAAAATATTTTTTCTA CTAGACCCATTTAGAAGCTTTTCTTTTATTACCAACAAAAGGAATTATGAAATTGAATCA AATAAATTTTTGTACATGTCTAATTAG
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PY17X_1420400


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India