PcyM_0118300 | methionine aminopeptidase 1c, putative

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
PcyM_0118300SP0.0148100.9837070.001483CS pos: 22-23. GDS-IG. Pr: 0.7512
No Results

  • Fasta :-

    >PcyM_0118300 MKAHTLVLLTWAFLCLSRRGDSIGRVRRVRSGSIGRVRSDSIGRVRRVRSGSIGRVRSDS IGRVRSDSIGRVRSGSIGRVRSGSCADAARTRPRRGFIHLGKHSKGSYAKQRFPHHLNST TAGEGFSNTVHHDVKKNTQNYSENSPPASFHRYIENMKTRKNVHPSIRITEFDKKFIKCK ESYNSRYSHLKDSELFGSFHFVGRQKKGIMSPKYYLPKYVERPNYHRTGTPVYVPYEGEG QVSSSTKGRKSPYPYANIKSEEDIETIRSNCQFARELMDDVSHIICEGVTTNDLDIYILN KCINNGYYPSPLNYHLFPKSSCISINEILCHGIPDNNVLYENDIVKVDISVFKDGFHADM CESFLVPKLTKNEKKRKKKFYDFIYLNDKLRTRYTKFILKYNFDLITNKIVKTGKQCSIR RIKYDPPNSKDRPSEQYHSYDDNTNSVLRSGHFGGYAATHHEDYYSDAGGAAHLGGEDLE RDNFERDDLAGDHFERDDLDDLELFHRQYDEHVIYNKRQSSQTYDDIQKYIYRKTREPQN NQNNQNRFAFFDKRKLDVDELKIYMHKKNMDLIRTAHECTMEAIRVCKPGVPFSAIGDAI ADHLDRKNNQHVRYAVVPHLCGHNIGKNFHEEPFIIHTRNDDDRRMCENLVFTIEPIISE RACDFIMWPDNWTLSNARYVFSAQFEHTIVVRKDGAEILTGKTDRSPKFVWECEQE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0118300.fa Sequence name : PcyM_0118300 Sequence length : 716 VALUES OF COMPUTED PARAMETERS Coef20 : 4.857 CoefTot : 1.212 ChDiff : 22 ZoneTo : 58 KR : 15 DE : 2 CleavSite : 59 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.294 1.400 0.023 0.506 MesoH : -0.915 0.109 -0.425 0.191 MuHd_075 : 24.933 13.593 6.257 5.304 MuHd_095 : 28.864 21.721 7.641 7.819 MuHd_100 : 33.356 22.785 8.438 8.193 MuHd_105 : 38.680 23.204 9.192 9.053 Hmax_075 : -2.217 8.750 -0.052 1.983 Hmax_095 : 16.450 11.300 3.372 6.545 Hmax_100 : 16.000 11.300 3.231 6.380 Hmax_105 : 2.500 13.388 1.520 3.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0930 0.9070 DFMC : 0.0372 0.9628 This protein is probably imported in mitochondria. f(Ser) = 0.1552 f(Arg) = 0.2414 CMi = 0.38039 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 716 PcyM_0118300 MKAHTLVLLTWAFLCLSRRGDSIGRVRRVRSGSIGRVRSDSIGRVRRVRSGSIGRVRSDSIGRVRSDSIGRVRSGSIGRV 80 RSGSCADAARTRPRRGFIHLGKHSKGSYAKQRFPHHLNSTTAGEGFSNTVHHDVKKNTQNYSENSPPASFHRYIENMKTR 160 KNVHPSIRITEFDKKFIKCKESYNSRYSHLKDSELFGSFHFVGRQKKGIMSPKYYLPKYVERPNYHRTGTPVYVPYEGEG 240 QVSSSTKGRKSPYPYANIKSEEDIETIRSNCQFARELMDDVSHIICEGVTTNDLDIYILNKCINNGYYPSPLNYHLFPKS 320 SCISINEILCHGIPDNNVLYENDIVKVDISVFKDGFHADMCESFLVPKLTKNEKKRKKKFYDFIYLNDKLRTRYTKFILK 400 YNFDLITNKIVKTGKQCSIRRIKYDPPNSKDRPSEQYHSYDDNTNSVLRSGHFGGYAATHHEDYYSDAGGAAHLGGEDLE 480 RDNFERDDLAGDHFERDDLDDLELFHRQYDEHVIYNKRQSSQTYDDIQKYIYRKTREPQNNQNNQNRFAFFDKRKLDVDE 560 LKIYMHKKNMDLIRTAHECTMEAIRVCKPGVPFSAIGDAIADHLDRKNNQHVRYAVVPHLCGHNIGKNFHEEPFIIHTRN 640 DDDRRMCENLVFTIEPIISERACDFIMWPDNWTLSNARYVFSAQFEHTIVVRKDGAEILTGKTDRSPKFVWECEQE 720 ...........................P.P................P.P............................... 80 ..............P................................................................. 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............................................................................ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 5 Name Pos Context Score Pred ____________________________v_________________ PcyM_0118300 2 -----MK|AH 0.067 . PcyM_0118300 18 AFLCLSR|RG 0.070 . PcyM_0118300 19 FLCLSRR|GD 0.169 . PcyM_0118300 25 RGDSIGR|VR 0.062 . PcyM_0118300 27 DSIGRVR|RV 0.096 . PcyM_0118300 28 SIGRVRR|VR 0.530 *ProP* PcyM_0118300 30 GRVRRVR|SG 0.579 *ProP* PcyM_0118300 36 RSGSIGR|VR 0.092 . PcyM_0118300 38 GSIGRVR|SD 0.177 . PcyM_0118300 44 RSDSIGR|VR 0.065 . PcyM_0118300 46 DSIGRVR|RV 0.099 . PcyM_0118300 47 SIGRVRR|VR 0.544 *ProP* PcyM_0118300 49 GRVRRVR|SG 0.579 *ProP* PcyM_0118300 55 RSGSIGR|VR 0.092 . PcyM_0118300 57 GSIGRVR|SD 0.182 . PcyM_0118300 63 RSDSIGR|VR 0.087 . PcyM_0118300 65 DSIGRVR|SD 0.152 . PcyM_0118300 71 RSDSIGR|VR 0.082 . PcyM_0118300 73 DSIGRVR|SG 0.140 . PcyM_0118300 79 RSGSIGR|VR 0.083 . PcyM_0118300 81 GSIGRVR|SG 0.138 . PcyM_0118300 90 SCADAAR|TR 0.080 . PcyM_0118300 92 ADAARTR|PR 0.089 . PcyM_0118300 94 AARTRPR|RG 0.103 . PcyM_0118300 95 ARTRPRR|GF 0.567 *ProP* PcyM_0118300 102 GFIHLGK|HS 0.066 . PcyM_0118300 105 HLGKHSK|GS 0.084 . PcyM_0118300 110 SKGSYAK|QR 0.070 . PcyM_0118300 112 GSYAKQR|FP 0.148 . PcyM_0118300 135 TVHHDVK|KN 0.069 . PcyM_0118300 136 VHHDVKK|NT 0.101 . PcyM_0118300 152 PPASFHR|YI 0.154 . PcyM_0118300 158 RYIENMK|TR 0.058 . PcyM_0118300 160 IENMKTR|KN 0.083 . PcyM_0118300 161 ENMKTRK|NV 0.176 . PcyM_0118300 168 NVHPSIR|IT 0.097 . PcyM_0118300 174 RITEFDK|KF 0.060 . PcyM_0118300 175 ITEFDKK|FI 0.117 . PcyM_0118300 178 FDKKFIK|CK 0.064 . PcyM_0118300 180 KKFIKCK|ES 0.074 . PcyM_0118300 186 KESYNSR|YS 0.100 . PcyM_0118300 191 SRYSHLK|DS 0.085 . PcyM_0118300 204 SFHFVGR|QK 0.107 . PcyM_0118300 206 HFVGRQK|KG 0.059 . PcyM_0118300 207 FVGRQKK|GI 0.283 . PcyM_0118300 213 KGIMSPK|YY 0.072 . PcyM_0118300 218 PKYYLPK|YV 0.087 . PcyM_0118300 222 LPKYVER|PN 0.100 . PcyM_0118300 227 ERPNYHR|TG 0.079 . PcyM_0118300 247 QVSSSTK|GR 0.067 . PcyM_0118300 249 SSSTKGR|KS 0.109 . PcyM_0118300 250 SSTKGRK|SP 0.112 . PcyM_0118300 259 YPYANIK|SE 0.110 . PcyM_0118300 268 EDIETIR|SN 0.105 . PcyM_0118300 275 SNCQFAR|EL 0.132 . PcyM_0118300 301 DIYILNK|CI 0.060 . PcyM_0118300 319 NYHLFPK|SS 0.107 . PcyM_0118300 346 YENDIVK|VD 0.062 . PcyM_0118300 353 VDISVFK|DG 0.079 . PcyM_0118300 368 ESFLVPK|LT 0.061 . PcyM_0118300 371 LVPKLTK|NE 0.054 . PcyM_0118300 374 KLTKNEK|KR 0.058 . PcyM_0118300 375 LTKNEKK|RK 0.096 . PcyM_0118300 376 TKNEKKR|KK 0.235 . PcyM_0118300 377 KNEKKRK|KK 0.087 . PcyM_0118300 378 NEKKRKK|KF 0.103 . PcyM_0118300 379 EKKRKKK|FY 0.475 . PcyM_0118300 389 FIYLNDK|LR 0.053 . PcyM_0118300 391 YLNDKLR|TR 0.087 . PcyM_0118300 393 NDKLRTR|YT 0.091 . PcyM_0118300 396 LRTRYTK|FI 0.196 . PcyM_0118300 400 YTKFILK|YN 0.064 . PcyM_0118300 409 FDLITNK|IV 0.070 . PcyM_0118300 412 ITNKIVK|TG 0.057 . PcyM_0118300 415 KIVKTGK|QC 0.066 . PcyM_0118300 420 GKQCSIR|RI 0.095 . PcyM_0118300 421 KQCSIRR|IK 0.123 . PcyM_0118300 423 CSIRRIK|YD 0.115 . PcyM_0118300 430 YDPPNSK|DR 0.062 . PcyM_0118300 432 PPNSKDR|PS 0.132 . PcyM_0118300 449 NTNSVLR|SG 0.140 . PcyM_0118300 481 GGEDLER|DN 0.094 . PcyM_0118300 486 ERDNFER|DD 0.123 . PcyM_0118300 496 AGDHFER|DD 0.095 . PcyM_0118300 507 DLELFHR|QY 0.082 . PcyM_0118300 517 EHVIYNK|RQ 0.057 . PcyM_0118300 518 HVIYNKR|QS 0.198 . PcyM_0118300 529 TYDDIQK|YI 0.065 . PcyM_0118300 533 IQKYIYR|KT 0.088 . PcyM_0118300 534 QKYIYRK|TR 0.089 . PcyM_0118300 536 YIYRKTR|EP 0.233 . PcyM_0118300 547 NQNNQNR|FA 0.123 . PcyM_0118300 553 RFAFFDK|RK 0.063 . PcyM_0118300 554 FAFFDKR|KL 0.150 . PcyM_0118300 555 AFFDKRK|LD 0.082 . PcyM_0118300 562 LDVDELK|IY 0.066 . PcyM_0118300 567 LKIYMHK|KN 0.067 . PcyM_0118300 568 KIYMHKK|NM 0.135 . PcyM_0118300 574 KNMDLIR|TA 0.135 . PcyM_0118300 585 CTMEAIR|VC 0.086 . PcyM_0118300 588 EAIRVCK|PG 0.097 . PcyM_0118300 606 IADHLDR|KN 0.085 . PcyM_0118300 607 ADHLDRK|NN 0.086 . PcyM_0118300 613 KNNQHVR|YA 0.111 . PcyM_0118300 627 CGHNIGK|NF 0.071 . PcyM_0118300 639 PFIIHTR|ND 0.099 . PcyM_0118300 644 TRNDDDR|RM 0.111 . PcyM_0118300 645 RNDDDRR|MC 0.155 . PcyM_0118300 661 EPIISER|AC 0.091 . PcyM_0118300 678 WTLSNAR|YV 0.125 . PcyM_0118300 692 EHTIVVR|KD 0.104 . PcyM_0118300 693 HTIVVRK|DG 0.111 . PcyM_0118300 702 AEILTGK|TD 0.055 . PcyM_0118300 705 LTGKTDR|SP 0.118 . PcyM_0118300 708 KTDRSPK|FV 0.317 . ____________________________^_________________

  • Fasta :-

    >PcyM_0118300 ATGAAGGCGCATACGCTCGTGCTGCTGACTTGGGCGTTTCTCTGCTTGAGCAGGAGGGGT GACAGCATCGGAAGGGTTAGAAGGGTCAGAAGTGGCAGCATCGGAAGGGTCAGAAGTGAC AGCATCGGAAGGGTTAGAAGGGTCAGAAGTGGCAGCATCGGAAGGGTCAGAAGTGACAGC ATCGGAAGGGTCAGAAGTGACAGCATCGGAAGGGTCAGAAGTGGCAGCATCGGAAGGGTC AGAAGTGGCAGTTGCGCTGACGCAGCGCGCACGAGGCCGCGCAGGGGGTTCATTCACTTG GGGAAGCATTCCAAAGGGAGCTACGCAAAGCAGAGATTCCCGCACCACCTGAACAGCACG ACCGCAGGTGAAGGGTTCTCAAACACGGTCCACCACGACGTGAAGAAGAACACACAAAAC TACTCGGAAAATAGCCCCCCTGCGTCTTTCCATAGATATATTGAAAATATGAAGACAAGA AAAAACGTGCACCCAAGTATCCGCATAACCGAATTTGATAAAAAATTCATCAAATGCAAG GAGAGTTACAACAGCAGGTACTCCCACCTGAAGGACAGCGAGTTATTTGGAAGCTTCCAC TTCGTCGGGAGACAAAAAAAAGGGATCATGTCACCTAAGTATTATTTGCCCAAGTATGTA GAGAGGCCCAATTACCACAGGACAGGTACCCCTGTATATGTGCCTTACGAGGGAGAGGGA CAAGTGAGTAGCAGCACCAAGGGGAGAAAATCACCCTACCCGTATGCAAACATCAAAAGT GAGGAGGATATTGAAACGATTAGGAGCAACTGCCAATTCGCTCGAGAACTCATGGATGAC GTATCACACATCATTTGCGAAGGAGTAACAACGAACGATCTAGATATATACATCCTAAAT AAGTGCATAAATAATGGGTACTATCCCTCTCCTCTCAATTATCACCTGTTCCCCAAGAGC TCGTGCATATCGATAAACGAAATACTTTGTCATGGAATCCCAGACAATAACGTCCTGTAC GAAAACGATATCGTAAAGGTAGACATTAGCGTTTTTAAGGATGGCTTTCATGCAGATATG TGTGAAAGCTTCCTTGTTCCTAAGTTAACAAAAAATGAGAAAAAAAGAAAAAAAAAATTT TACGATTTTATATACTTAAATGATAAACTGCGGACGAGGTACACGAAATTTATTTTGAAG TATAACTTTGACCTCATTACTAATAAAATTGTGAAGACTGGCAAACAATGCTCCATAAGA AGAATCAAATACGACCCACCCAACTCGAAGGACCGTCCTAGTGAGCAATACCACTCCTAC GACGATAATACCAATTCAGTGTTGCGCAGCGGCCACTTCGGGGGATACGCAGCCACGCAC CATGAGGATTATTACAGCGATGCTGGTGGAGCGGCGCACCTGGGGGGGGAAGACCTGGAG AGGGACAACTTCGAGAGGGACGACCTGGCGGGGGACCACTTCGAGAGGGACGACCTGGAC GACCTCGAGCTATTCCACCGGCAATACGACGAGCACGTCATCTACAACAAGCGACAAAGC AGCCAAACCTACGATGACATCCAGAAGTACATATACAGAAAAACGAGGGAGCCCCAAAAT AATCAGAACAACCAAAACAGGTTCGCCTTCTTCGACAAAAGGAAGCTTGACGTAGATGAA CTCAAAATATACATGCATAAAAAAAATATGGACCTCATAAGAACAGCTCATGAGTGTACC ATGGAAGCCATCCGGGTTTGTAAGCCAGGTGTACCTTTCAGTGCTATAGGAGATGCAATA GCAGACCACCTAGACAGGAAAAATAATCAACACGTACGTTATGCAGTGGTTCCCCATTTA TGTGGACATAACATTGGAAAAAATTTCCATGAAGAACCTTTTATTATTCATACACGAAAT GATGATGATAGACGGATGTGTGAAAATCTTGTGTTTACTATTGAACCTATTATATCTGAG AGAGCTTGTGACTTTATCATGTGGCCGGATAACTGGACTTTGTCAAATGCTAGGTATGTA TTCTCTGCTCAATTCGAGCATACCATCGTTGTGCGCAAAGACGGCGCGGAGATCCTCACG GGTAAAACGGACCGTTCCCCAAAGTTCGTTTGGGAATGCGAACAGGAGTAG
  • Download Fasta

  • Fasta :-

    MKAHTLVLLTWAFLCLSRRGDSIGRVRRVRSGSIGRVRSDSIGRVRRVRSGSIGRVRSDS IGRVRSDSIGRVRSGSIGRVRSGSCADAARTRPRRGFIHLGKHSKGSYAKQRFPHHLNST TAGEGFSNTVHHDVKKNTQNYSENSPPASFHRYIENMKTRKNVHPSIRITEFDKKFIKCK ESYNSRYSHLKDSELFGSFHFVGRQKKGIMSPKYYLPKYVERPNYHRTGTPVYVPYEGEG QVSSSTKGRKSPYPYANIKSEEDIETIRSNCQFARELMDDVSHIICEGVTTNDLDIYILN KCINNGYYPSPLNYHLFPKSSCISINEILCHGIPDNNVLYENDIVKVDISVFKDGFHADM CESFLVPKLTKNEKKRKKKFYDFIYLNDKLRTRYTKFILKYNFDLITNKIVKTGKQCSIR RIKYDPPNSKDRPSEQYHSYDDNTNSVLRSGHFGGYAATHHEDYYSDAGGAAHLGGEDLE RDNFERDDLAGDHFERDDLDDLELFHRQYDEHVIYNKRQSSQTYDDIQKYIYRKTREPQN NQNNQNRFAFFDKRKLDVDELKIYMHKKNMDLIRTAHECTMEAIRVCKPGVPFSAIGDAI ADHLDRKNNQHVRYAVVPHLCGHNIGKNFHEEPFIIHTRNDDDRRMCENLVFTIEPIISE RACDFIMWPDNWTLSNARYVFSAQFEHTIVVRKDGAEILTGKTDRSPKFVWECEQE

  • title: active site
  • coordinates: H331,D348,D359,H623,E655,E686
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_011830041 SVRSDSIGRV0.996unspPcyM_011830041 SVRSDSIGRV0.996unspPcyM_011830041 SVRSDSIGRV0.996unspPcyM_011830052 SVRSGSIGRV0.992unspPcyM_011830060 SVRSDSIGRV0.996unspPcyM_011830068 SVRSDSIGRV0.996unspPcyM_011830076 SVRSGSIGRV0.992unspPcyM_011830082 SGRVRSGSCA0.992unspPcyM_011830084 SVRSGSCADA0.996unspPcyM_0118300245 SQVSSSTKGR0.994unspPcyM_0118300251 SKGRKSPYPY0.998unspPcyM_0118300260 SANIKSEEDI0.993unspPcyM_0118300439 SEQYHSYDDN0.996unspPcyM_011830022 SRRGDSIGRV0.993unspPcyM_011830033 SVRSGSIGRV0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India