PcyM_0305200 | ubiquitin specific protease, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_0305200OTHER0.9999210.0000250.000054
No Results

  • Fasta :-

    >PcyM_0305200 MSLTEHNLRDLFYAKNYKYYAKYDNYGSVQRRHTSFQNNGNVCYCNASLQLLLSIKPLCI YLLSKFDKIYGRTKSKSKYKGDILKALFYIIEETYKVEKGYLCTDTHINLLKKMRKYNST IVINAQNDAHEFLLMLLNYINVECNRDFNFPPNFEIILDDKDSKENASEKYWVKYLFRDN SIITDLLGFQNVSSITCTHCGHTRHSFEFCLDLGLEFQSEHIQSTSLIDLLRSNIMKSDD FCHLFCPICKSKQNSCIKKGLYRMPNLYMIIYIKRFKWSYECTNYFKSRVKKIDTTVLLP WDGLIDFTSFAYMSNHESLSNSKYLIESFICHSGNSYNGHYTAVVKHTDGFYKCNDEKMK KLSNPFNPENISDIYLLLLRRVT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0305200.fa Sequence name : PcyM_0305200 Sequence length : 383 VALUES OF COMPUTED PARAMETERS Coef20 : 3.511 CoefTot : 0.234 ChDiff : 11 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.988 1.647 0.147 0.535 MesoH : -0.702 0.141 -0.375 0.136 MuHd_075 : 28.525 12.654 6.875 5.494 MuHd_095 : 17.428 13.548 4.326 3.006 MuHd_100 : 12.052 12.086 2.526 2.436 MuHd_105 : 14.770 11.613 3.824 3.377 Hmax_075 : 3.700 3.500 -1.206 2.960 Hmax_095 : 0.300 6.100 -2.771 2.170 Hmax_100 : -3.100 4.200 -3.712 1.750 Hmax_105 : -1.800 3.200 -3.247 1.350 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9619 0.0381 DFMC : 0.9755 0.0245
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 383 PcyM_0305200 MSLTEHNLRDLFYAKNYKYYAKYDNYGSVQRRHTSFQNNGNVCYCNASLQLLLSIKPLCIYLLSKFDKIYGRTKSKSKYK 80 GDILKALFYIIEETYKVEKGYLCTDTHINLLKKMRKYNSTIVINAQNDAHEFLLMLLNYINVECNRDFNFPPNFEIILDD 160 KDSKENASEKYWVKYLFRDNSIITDLLGFQNVSSITCTHCGHTRHSFEFCLDLGLEFQSEHIQSTSLIDLLRSNIMKSDD 240 FCHLFCPICKSKQNSCIKKGLYRMPNLYMIIYIKRFKWSYECTNYFKSRVKKIDTTVLLPWDGLIDFTSFAYMSNHESLS 320 NSKYLIESFICHSGNSYNGHYTAVVKHTDGFYKCNDEKMKKLSNPFNPENISDIYLLLLRRVT 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...................................................P............................ 320 ............................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PcyM_0305200 9 LTEHNLR|DL 0.102 . PcyM_0305200 15 RDLFYAK|NY 0.056 . PcyM_0305200 18 FYAKNYK|YY 0.065 . PcyM_0305200 22 NYKYYAK|YD 0.069 . PcyM_0305200 31 NYGSVQR|RH 0.072 . PcyM_0305200 32 YGSVQRR|HT 0.282 . PcyM_0305200 56 QLLLSIK|PL 0.065 . PcyM_0305200 65 CIYLLSK|FD 0.066 . PcyM_0305200 68 LLSKFDK|IY 0.084 . PcyM_0305200 72 FDKIYGR|TK 0.086 . PcyM_0305200 74 KIYGRTK|SK 0.092 . PcyM_0305200 76 YGRTKSK|SK 0.088 . PcyM_0305200 78 RTKSKSK|YK 0.103 . PcyM_0305200 80 KSKSKYK|GD 0.067 . PcyM_0305200 85 YKGDILK|AL 0.072 . PcyM_0305200 96 IIEETYK|VE 0.057 . PcyM_0305200 99 ETYKVEK|GY 0.060 . PcyM_0305200 112 THINLLK|KM 0.069 . PcyM_0305200 113 HINLLKK|MR 0.082 . PcyM_0305200 115 NLLKKMR|KY 0.087 . PcyM_0305200 116 LLKKMRK|YN 0.118 . PcyM_0305200 146 INVECNR|DF 0.085 . PcyM_0305200 161 EIILDDK|DS 0.059 . PcyM_0305200 164 LDDKDSK|EN 0.059 . PcyM_0305200 170 KENASEK|YW 0.080 . PcyM_0305200 174 SEKYWVK|YL 0.068 . PcyM_0305200 178 WVKYLFR|DN 0.120 . PcyM_0305200 204 THCGHTR|HS 0.093 . PcyM_0305200 232 SLIDLLR|SN 0.113 . PcyM_0305200 237 LRSNIMK|SD 0.099 . PcyM_0305200 250 LFCPICK|SK 0.066 . PcyM_0305200 252 CPICKSK|QN 0.078 . PcyM_0305200 258 KQNSCIK|KG 0.059 . PcyM_0305200 259 QNSCIKK|GL 0.146 . PcyM_0305200 263 IKKGLYR|MP 0.078 . PcyM_0305200 274 YMIIYIK|RF 0.056 . PcyM_0305200 275 MIIYIKR|FK 0.221 . PcyM_0305200 277 IYIKRFK|WS 0.064 . PcyM_0305200 287 ECTNYFK|SR 0.072 . PcyM_0305200 289 TNYFKSR|VK 0.102 . PcyM_0305200 291 YFKSRVK|KI 0.063 . PcyM_0305200 292 FKSRVKK|ID 0.509 *ProP* PcyM_0305200 323 ESLSNSK|YL 0.063 . PcyM_0305200 346 HYTAVVK|HT 0.065 . PcyM_0305200 353 HTDGFYK|CN 0.070 . PcyM_0305200 358 YKCNDEK|MK 0.059 . PcyM_0305200 360 CNDEKMK|KL 0.069 . PcyM_0305200 361 NDEKMKK|LS 0.081 . PcyM_0305200 380 IYLLLLR|RV 0.077 . PcyM_0305200 381 YLLLLRR|VT 0.091 . ____________________________^_________________

  • Fasta :-

    >PcyM_0305200 ATGAGCCTCACTGAACACAATCTGCGTGATTTGTTCTATGCGAAGAATTACAAATATTAC GCCAAGTATGATAACTATGGAAGTGTCCAAAGGAGACACACGTCCTTCCAGAACAATGGG AACGTGTGCTACTGCAACGCGTCTCTCCAACTGTTACTGTCGATCAAACCACTCTGCATA TACCTGCTAAGCAAGTTTGATAAAATATATGGAAGAACGAAATCAAAATCAAAGTATAAG GGAGACATACTGAAGGCCCTCTTTTACATTATTGAGGAAACGTACAAAGTCGAAAAAGGG TACTTATGCACAGACACACATATTAATCTTTTAAAAAAAATGAGAAAATATAATAGCACC ATAGTGATCAATGCACAGAATGATGCACACGAATTCTTGTTAATGCTACTCAACTATATA AACGTTGAGTGCAACCGTGATTTTAATTTCCCACCAAATTTTGAAATCATCCTCGACGAT AAAGATAGCAAAGAAAACGCATCGGAAAAGTACTGGGTAAAATATCTATTTAGGGATAAC AGCATAATAACAGACCTTTTAGGGTTCCAAAATGTCTCTAGCATAACTTGCACACATTGT GGACATACAAGACACAGTTTTGAATTCTGCCTAGACTTAGGGTTAGAGTTCCAAAGTGAG CACATACAAAGTACATCACTAATTGATTTACTAAGGAGTAACATCATGAAGAGTGATGAT TTTTGCCACTTATTTTGCCCCATCTGTAAATCCAAACAAAATAGCTGCATTAAGAAAGGC CTCTACAGAATGCCCAATTTGTATATGATTATTTATATCAAACGATTTAAGTGGAGTTAC GAGTGCACCAATTATTTCAAAAGTAGAGTGAAAAAAATTGACACAACTGTATTACTGCCA TGGGATGGATTAATTGATTTTACTTCCTTTGCTTACATGTCCAACCATGAATCTTTATCC AACTCGAAGTATCTCATCGAGAGCTTCATTTGTCACAGCGGCAACAGTTACAATGGTCAC TACACAGCCGTCGTTAAGCATACCGATGGATTTTACAAATGCAATGATGAAAAAATGAAA AAACTCAGTAACCCGTTTAATCCTGAAAATATTAGCGACATTTACCTGCTCCTACTCAGA AGGGTTACCTAA
  • Download Fasta

  • Fasta :-

    MSLTEHNLRDLFYAKNYKYYAKYDNYGSVQRRHTSFQNNGNVCYCNASLQLLLSIKPLCI YLLSKFDKIYGRTKSKSKYKGDILKALFYIIEETYKVEKGYLCTDTHINLLKKMRKYNST IVINAQNDAHEFLLMLLNYINVECNRDFNFPPNFEIILDDKDSKENASEKYWVKYLFRDN SIITDLLGFQNVSSITCTHCGHTRHSFEFCLDLGLEFQSEHIQSTSLIDLLRSNIMKSDD FCHLFCPICKSKQNSCIKKGLYRMPNLYMIIYIKRFKWSYECTNYFKSRVKKIDTTVLLP WDGLIDFTSFAYMSNHESLSNSKYLIESFICHSGNSYNGHYTAVVKHTDGFYKCNDEKMK KLSNPFNPENISDIYLLLLRRVT

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_030520077 STKSKSKYKG0.997unspPcyM_0305200163 SDDKDSKENA0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India