PcyM_0416800 | cysteine protease, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_0416800OTHER0.6779200.1138830.208197
No Results

  • Fasta :-

    >PcyM_0416800 MLFLLFTKMFNTGALLRRNTEGFVNAESTPGAVTLGKASDGYLLTQGTSEQKRIITKDER PDNRPGKCQTRHDPTPTTHRTSSNPRRQSVGVSQSNYAKVKAQVLKKTTEVKINRTCGSE MGFLFIPHSYIYVTTKDSKAGAFKMLPHIEDNVLPLSWKAYLPEDPFTATKRKETETKWY RRTLAESNDGPCDEDHDLFSSGIDSEEDEAIFPMEKDDQSEGCSEGYSEGCSEDASEEHQ LRNSIDRVLKGVYKAAEDGRKVLITKEELDSSMKEELIKYCQLLKKVDTSGTLEEHQMGS EMDVFDNLVRLLLKHRDETVFTLRRKLRNPAVCMKNVGEWVLKRRGLALPDS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0416800.fa Sequence name : PcyM_0416800 Sequence length : 352 VALUES OF COMPUTED PARAMETERS Coef20 : 4.828 CoefTot : 0.390 ChDiff : -3 ZoneTo : 20 KR : 3 DE : 0 CleavSite : 19 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.871 1.135 0.018 0.496 MesoH : -1.024 -0.128 -0.576 0.095 MuHd_075 : 33.531 20.458 7.674 7.927 MuHd_095 : 10.665 8.814 4.045 2.258 MuHd_100 : 22.471 13.305 6.004 5.073 MuHd_105 : 29.898 15.678 7.613 6.707 Hmax_075 : 21.000 20.883 3.149 6.837 Hmax_095 : 7.600 11.200 -0.075 3.360 Hmax_100 : 17.700 15.000 2.509 5.570 Hmax_105 : 21.100 19.133 2.969 6.920 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4763 0.5237 DFMC : 0.4001 0.5999 This protein is probably imported in mitochondria. f(Ser) = 0.0000 f(Arg) = 0.1000 CMi = 0.00000 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 352 PcyM_0416800 MLFLLFTKMFNTGALLRRNTEGFVNAESTPGAVTLGKASDGYLLTQGTSEQKRIITKDERPDNRPGKCQTRHDPTPTTHR 80 TSSNPRRQSVGVSQSNYAKVKAQVLKKTTEVKINRTCGSEMGFLFIPHSYIYVTTKDSKAGAFKMLPHIEDNVLPLSWKA 160 YLPEDPFTATKRKETETKWYRRTLAESNDGPCDEDHDLFSSGIDSEEDEAIFPMEKDDQSEGCSEGYSEGCSEDASEEHQ 240 LRNSIDRVLKGVYKAAEDGRKVLITKEELDSSMKEELIKYCQLLKKVDTSGTLEEHQMGSEMDVFDNLVRLLLKHRDETV 320 FTLRRKLRNPAVCMKNVGEWVLKRRGLALPDS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0416800 8 LFLLFTK|MF 0.058 . PcyM_0416800 17 NTGALLR|RN 0.081 . PcyM_0416800 18 TGALLRR|NT 0.171 . PcyM_0416800 37 GAVTLGK|AS 0.077 . PcyM_0416800 52 QGTSEQK|RI 0.058 . PcyM_0416800 53 GTSEQKR|II 0.304 . PcyM_0416800 57 QKRIITK|DE 0.070 . PcyM_0416800 60 IITKDER|PD 0.073 . PcyM_0416800 64 DERPDNR|PG 0.081 . PcyM_0416800 67 PDNRPGK|CQ 0.170 . PcyM_0416800 71 PGKCQTR|HD 0.081 . PcyM_0416800 80 PTPTTHR|TS 0.084 . PcyM_0416800 86 RTSSNPR|RQ 0.122 . PcyM_0416800 87 TSSNPRR|QS 0.233 . PcyM_0416800 99 SQSNYAK|VK 0.077 . PcyM_0416800 101 SNYAKVK|AQ 0.070 . PcyM_0416800 106 VKAQVLK|KT 0.074 . PcyM_0416800 107 KAQVLKK|TT 0.129 . PcyM_0416800 112 KKTTEVK|IN 0.068 . PcyM_0416800 115 TEVKINR|TC 0.099 . PcyM_0416800 136 YIYVTTK|DS 0.084 . PcyM_0416800 139 VTTKDSK|AG 0.055 . PcyM_0416800 144 SKAGAFK|ML 0.086 . PcyM_0416800 159 VLPLSWK|AY 0.062 . PcyM_0416800 171 DPFTATK|RK 0.065 . PcyM_0416800 172 PFTATKR|KE 0.111 . PcyM_0416800 173 FTATKRK|ET 0.109 . PcyM_0416800 178 RKETETK|WY 0.072 . PcyM_0416800 181 TETKWYR|RT 0.077 . PcyM_0416800 182 ETKWYRR|TL 0.135 . PcyM_0416800 216 AIFPMEK|DD 0.064 . PcyM_0416800 242 SEEHQLR|NS 0.081 . PcyM_0416800 247 LRNSIDR|VL 0.113 . PcyM_0416800 250 SIDRVLK|GV 0.213 . PcyM_0416800 254 VLKGVYK|AA 0.090 . PcyM_0416800 260 KAAEDGR|KV 0.103 . PcyM_0416800 261 AAEDGRK|VL 0.077 . PcyM_0416800 266 RKVLITK|EE 0.058 . PcyM_0416800 274 ELDSSMK|EE 0.055 . PcyM_0416800 279 MKEELIK|YC 0.061 . PcyM_0416800 285 KYCQLLK|KV 0.075 . PcyM_0416800 286 YCQLLKK|VD 0.082 . PcyM_0416800 310 VFDNLVR|LL 0.072 . PcyM_0416800 314 LVRLLLK|HR 0.063 . PcyM_0416800 316 RLLLKHR|DE 0.078 . PcyM_0416800 324 ETVFTLR|RK 0.064 . PcyM_0416800 325 TVFTLRR|KL 0.092 . PcyM_0416800 326 VFTLRRK|LR 0.071 . PcyM_0416800 328 TLRRKLR|NP 0.274 . PcyM_0416800 335 NPAVCMK|NV 0.095 . PcyM_0416800 343 VGEWVLK|RR 0.067 . PcyM_0416800 344 GEWVLKR|RG 0.127 . PcyM_0416800 345 EWVLKRR|GL 0.112 . ____________________________^_________________

  • Fasta :-

    >PcyM_0416800 ATGCTCTTCCTGCTTTTTACTAAAATGTTTAACACAGGTGCTCTGTTAAGACGTAACACG GAAGGCTTTGTAAATGCGGAGTCCACTCCTGGAGCCGTAACCTTGGGGAAAGCATCAGAC GGGTATTTACTCACACAAGGAACTTCAGAACAGAAAAGGATAATAACTAAAGATGAGAGA CCAGATAACCGTCCAGGCAAATGTCAAACGAGGCATGATCCTACTCCCACTACGCATAGG ACATCTTCTAATCCTAGAAGACAATCCGTAGGGGTAAGTCAATCAAACTATGCCAAAGTA AAAGCACAAGTGTTGAAAAAAACAACCGAGGTGAAGATTAACAGAACGTGTGGGTCAGAA ATGGGATTCCTTTTCATCCCCCACTCTTATATCTACGTTACAACGAAAGACTCCAAAGCG GGAGCCTTTAAGATGCTGCCCCATATCGAGGATAACGTCTTACCGCTTAGCTGGAAGGCG TACCTGCCCGAGGATCCGTTCACAGCAACAAAGCGTAAGGAAACTGAGACGAAATGGTAC AGGAGAACCTTAGCAGAAAGCAATGATGGTCCGTGTGACGAGGATCATGACTTGTTTTCT AGTGGAATTGACTCAGAAGAGGATGAAGCCATTTTCCCCATGGAAAAGGATGATCAGTCC GAGGGATGCTCGGAGGGATACTCGGAGGGGTGCTCGGAAGACGCGTCGGAGGAACACCAG CTGAGGAACTCCATCGACCGCGTGCTGAAGGGGGTTTACAAAGCCGCTGAGGACGGAAGG AAGGTGCTAATCACGAAGGAAGAGTTAGACAGCTCCATGAAAGAGGAGCTAATAAAATAC TGCCAACTTTTAAAGAAGGTAGATACAAGTGGAACATTGGAGGAGCATCAGATGGGTAGC GAAATGGATGTGTTCGATAACCTCGTCAGGTTGCTGCTAAAGCATAGGGACGAAACAGTT TTTACTCTGCGAAGGAAACTGAGGAATCCAGCGGTCTGCATGAAGAATGTGGGCGAGTGG GTGCTGAAGAGGAGGGGGTTGGCCTTGCCCGACTCGTAG
  • Download Fasta

  • Fasta :-

    MLFLLFTKMFNTGALLRRNTEGFVNAESTPGAVTLGKASDGYLLTQGTSEQKRIITKDER PDNRPGKCQTRHDPTPTTHRTSSNPRRQSVGVSQSNYAKVKAQVLKKTTEVKINRTCGSE MGFLFIPHSYIYVTTKDSKAGAFKMLPHIEDNVLPLSWKAYLPEDPFTATKRKETETKWY RRTLAESNDGPCDEDHDLFSSGIDSEEDEAIFPMEKDDQSEGCSEGYSEGCSEDASEEHQ LRNSIDRVLKGVYKAAEDGRKVLITKEELDSSMKEELIKYCQLLKKVDTSGTLEEHQMGS EMDVFDNLVRLLLKHRDETVFTLRRKLRNPAVCMKNVGEWVLKRRGLALPDS

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0416800205 SSGIDSEEDE0.997unspPcyM_0416800272 SELDSSMKEE0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India