PcyM_0417200 | serine-repeat antigen (SERA)

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008234      

  • Computed_GO_Functions:  cysteine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_0417200SP0.0096030.9903460.000051CS pos: 22-23. VRC-TG. Pr: 0.7607
No Results

  • Fasta :-

    >PcyM_0417200 MKARLSLILILCVVCRDCAVRCTGTNDNPGAETGKQAEERTEAGGGPGGVEGTGAGAQGV VGAAGGGVAGTGAVPGQGGAVPGPGSGEAVSLSQDAGDTPREGQPVASQDGALPAENSED AQGRTDETSSNSVDSPSPDSNPNPVVDNAEAVTVTAPSEGPKEEIPVKSSLLKGYKGVKV TGPCSASFLVFFAPYLFIDVDAESSNIYLGTDLSDLEVTEKMGVGENNTNKCDDGKTFKF VALIGDDHLTIKWKVYDPKVQTPPQDDTAEMRKYVMKSLNGEFTSVQVHTVIQQNGSNVF ESKNYALSNDMPEQCDAIATNCFLSGSVYIEKCYRCTLKMKKLNPSDVCYNYIPKVENAP SQESISAQASDEESMQEKLAASIGMILQGMYKKGETGLNELLIFDEADAALKEELLNYCA LMKEVDTSGVLENYELGSEENVFANITNMLQKNSDYSVSSLQNKLKNPAMCLKNADEWVG SKMGLVLPNLPYNHLEVPHPSTPEVANVEDTSEDTQSGGYDGVIDFSTASKTNFSTSQYV DKMHCNGEYCDRTKDTSSCIAKIKAGDQGDCATSWLFASKVHLETIKCMKGHDHVASSAL YVANCSGKEAKDKCQTPSNPLDFLNTLEETKFLPAESDLPYSYKEVNNVCPEPKSHWQNL WENVKLLDKQYQPNSVSTKGYTAYQSDHFKGNMDAFNKLVKSEVMNKGSVIAYVKAQGVM TYDLNGKKVLSLCGGETPDLAVNIVGYGNYINGEGVKKSYWLLQNSWGKHWGDKGKFKVD MDGPPGCQHNFIHTAAVFNVDIPVVEKPTKEDAQIYNYYLKSSPDFWGNIYYKNVGGQTN TSAKNATGVANESVLHGQADTEVEVKVAGEDPATPLSTQATGGATAGQVSTVVPSLPVQV EVTVARNVGAPGDQAGSPGPAGPTGPAGSPGSPGQEGQEGPAGPPGTPGPEGPEGSAGPT GPEGPEGSAGPTGPPGPSGTPGTEGQPGTAPEAAVLDTQVSHVLKYIKKNKVKMNVVSYK NHEAITTGHDCWRSYSVNPDKYEECVKICEANWSKCENDVAPGFCLFEHGKDNDCFFCYV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0417200.fa Sequence name : PcyM_0417200 Sequence length : 1080 VALUES OF COMPUTED PARAMETERS Coef20 : 5.108 CoefTot : 0.898 ChDiff : -50 ZoneTo : 16 KR : 3 DE : 0 CleavSite : 18 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.906 1.929 0.331 0.685 MesoH : -0.016 0.260 -0.197 0.251 MuHd_075 : 19.813 13.092 5.794 3.956 MuHd_095 : 16.580 8.569 6.244 3.674 MuHd_100 : 15.663 10.865 6.864 3.348 MuHd_105 : 13.940 11.189 5.980 3.064 Hmax_075 : 19.483 24.150 5.693 6.568 Hmax_095 : 16.900 23.100 6.817 5.900 Hmax_100 : 5.700 17.100 4.399 4.710 Hmax_105 : 7.300 17.500 3.445 5.157 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9506 0.0494 DFMC : 0.9044 0.0956
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 1080 PcyM_0417200 MKARLSLILILCVVCRDCAVRCTGTNDNPGAETGKQAEERTEAGGGPGGVEGTGAGAQGVVGAAGGGVAGTGAVPGQGGA 80 VPGPGSGEAVSLSQDAGDTPREGQPVASQDGALPAENSEDAQGRTDETSSNSVDSPSPDSNPNPVVDNAEAVTVTAPSEG 160 PKEEIPVKSSLLKGYKGVKVTGPCSASFLVFFAPYLFIDVDAESSNIYLGTDLSDLEVTEKMGVGENNTNKCDDGKTFKF 240 VALIGDDHLTIKWKVYDPKVQTPPQDDTAEMRKYVMKSLNGEFTSVQVHTVIQQNGSNVFESKNYALSNDMPEQCDAIAT 320 NCFLSGSVYIEKCYRCTLKMKKLNPSDVCYNYIPKVENAPSQESISAQASDEESMQEKLAASIGMILQGMYKKGETGLNE 400 LLIFDEADAALKEELLNYCALMKEVDTSGVLENYELGSEENVFANITNMLQKNSDYSVSSLQNKLKNPAMCLKNADEWVG 480 SKMGLVLPNLPYNHLEVPHPSTPEVANVEDTSEDTQSGGYDGVIDFSTASKTNFSTSQYVDKMHCNGEYCDRTKDTSSCI 560 AKIKAGDQGDCATSWLFASKVHLETIKCMKGHDHVASSALYVANCSGKEAKDKCQTPSNPLDFLNTLEETKFLPAESDLP 640 YSYKEVNNVCPEPKSHWQNLWENVKLLDKQYQPNSVSTKGYTAYQSDHFKGNMDAFNKLVKSEVMNKGSVIAYVKAQGVM 720 TYDLNGKKVLSLCGGETPDLAVNIVGYGNYINGEGVKKSYWLLQNSWGKHWGDKGKFKVDMDGPPGCQHNFIHTAAVFNV 800 DIPVVEKPTKEDAQIYNYYLKSSPDFWGNIYYKNVGGQTNTSAKNATGVANESVLHGQADTEVEVKVAGEDPATPLSTQA 880 TGGATAGQVSTVVPSLPVQVEVTVARNVGAPGDQAGSPGPAGPTGPAGSPGSPGQEGQEGPAGPPGTPGPEGPEGSAGPT 960 GPEGPEGSAGPTGPPGPSGTPGTEGQPGTAPEAAVLDTQVSHVLKYIKKNKVKMNVVSYKNHEAITTGHDCWRSYSVNPD 1040 KYEECVKICEANWSKCENDVAPGFCLFEHGKDNDCFFCYV 1120 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................................................................................ 880 ................................................................................ 960 ................................................................................ 1040 ........................................ 1120 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0417200 2 -----MK|AR 0.057 . PcyM_0417200 4 ---MKAR|LS 0.089 . PcyM_0417200 16 ILCVVCR|DC 0.102 . PcyM_0417200 21 CRDCAVR|CT 0.118 . PcyM_0417200 35 PGAETGK|QA 0.073 . PcyM_0417200 40 GKQAEER|TE 0.125 . PcyM_0417200 101 DAGDTPR|EG 0.089 . PcyM_0417200 124 SEDAQGR|TD 0.106 . PcyM_0417200 162 APSEGPK|EE 0.073 . PcyM_0417200 168 KEEIPVK|SS 0.068 . PcyM_0417200 173 VKSSLLK|GY 0.077 . PcyM_0417200 176 SLLKGYK|GV 0.078 . PcyM_0417200 179 KGYKGVK|VT 0.066 . PcyM_0417200 221 DLEVTEK|MG 0.059 . PcyM_0417200 231 GENNTNK|CD 0.075 . PcyM_0417200 236 NKCDDGK|TF 0.060 . PcyM_0417200 239 DDGKTFK|FV 0.086 . PcyM_0417200 252 DDHLTIK|WK 0.059 . PcyM_0417200 254 HLTIKWK|VY 0.076 . PcyM_0417200 259 WKVYDPK|VQ 0.067 . PcyM_0417200 272 DDTAEMR|KY 0.071 . PcyM_0417200 273 DTAEMRK|YV 0.169 . PcyM_0417200 277 MRKYVMK|SL 0.145 . PcyM_0417200 303 SNVFESK|NY 0.068 . PcyM_0417200 332 GSVYIEK|CY 0.067 . PcyM_0417200 335 YIEKCYR|CT 0.077 . PcyM_0417200 339 CYRCTLK|MK 0.059 . PcyM_0417200 341 RCTLKMK|KL 0.068 . PcyM_0417200 342 CTLKMKK|LN 0.068 . PcyM_0417200 355 CYNYIPK|VE 0.054 . PcyM_0417200 378 EESMQEK|LA 0.082 . PcyM_0417200 392 ILQGMYK|KG 0.071 . PcyM_0417200 393 LQGMYKK|GE 0.089 . PcyM_0417200 412 EADAALK|EE 0.049 . PcyM_0417200 423 NYCALMK|EV 0.081 . PcyM_0417200 452 ITNMLQK|NS 0.072 . PcyM_0417200 464 VSSLQNK|LK 0.071 . PcyM_0417200 466 SLQNKLK|NP 0.073 . PcyM_0417200 473 NPAMCLK|NA 0.081 . PcyM_0417200 482 DEWVGSK|MG 0.052 . PcyM_0417200 531 DFSTASK|TN 0.060 . PcyM_0417200 542 TSQYVDK|MH 0.085 . PcyM_0417200 552 NGEYCDR|TK 0.081 . PcyM_0417200 554 EYCDRTK|DT 0.078 . PcyM_0417200 562 TSSCIAK|IK 0.080 . PcyM_0417200 564 SCIAKIK|AG 0.080 . PcyM_0417200 580 SWLFASK|VH 0.058 . PcyM_0417200 587 VHLETIK|CM 0.058 . PcyM_0417200 590 ETIKCMK|GH 0.069 . PcyM_0417200 608 VANCSGK|EA 0.082 . PcyM_0417200 611 CSGKEAK|DK 0.100 . PcyM_0417200 613 GKEAKDK|CQ 0.072 . PcyM_0417200 631 NTLEETK|FL 0.061 . PcyM_0417200 644 DLPYSYK|EV 0.080 . PcyM_0417200 654 NVCPEPK|SH 0.086 . PcyM_0417200 665 NLWENVK|LL 0.061 . PcyM_0417200 669 NVKLLDK|QY 0.056 . PcyM_0417200 679 PNSVSTK|GY 0.101 . PcyM_0417200 690 YQSDHFK|GN 0.095 . PcyM_0417200 698 NMDAFNK|LV 0.066 . PcyM_0417200 701 AFNKLVK|SE 0.070 . PcyM_0417200 707 KSEVMNK|GS 0.063 . PcyM_0417200 715 SVIAYVK|AQ 0.064 . PcyM_0417200 727 TYDLNGK|KV 0.061 . PcyM_0417200 728 YDLNGKK|VL 0.079 . PcyM_0417200 757 INGEGVK|KS 0.061 . PcyM_0417200 758 NGEGVKK|SY 0.124 . PcyM_0417200 769 LQNSWGK|HW 0.096 . PcyM_0417200 774 GKHWGDK|GK 0.084 . PcyM_0417200 776 HWGDKGK|FK 0.076 . PcyM_0417200 778 GDKGKFK|VD 0.085 . PcyM_0417200 807 DIPVVEK|PT 0.057 . PcyM_0417200 810 VVEKPTK|ED 0.065 . PcyM_0417200 821 IYNYYLK|SS 0.075 . PcyM_0417200 833 WGNIYYK|NV 0.117 . PcyM_0417200 844 QTNTSAK|NA 0.088 . PcyM_0417200 866 DTEVEVK|VA 0.068 . PcyM_0417200 906 VEVTVAR|NV 0.183 . PcyM_0417200 1005 QVSHVLK|YI 0.080 . PcyM_0417200 1008 HVLKYIK|KN 0.059 . PcyM_0417200 1009 VLKYIKK|NK 0.082 . PcyM_0417200 1011 KYIKKNK|VK 0.065 . PcyM_0417200 1013 IKKNKVK|MN 0.070 . PcyM_0417200 1020 MNVVSYK|NH 0.090 . PcyM_0417200 1033 TGHDCWR|SY 0.170 . PcyM_0417200 1041 YSVNPDK|YE 0.069 . PcyM_0417200 1047 KYEECVK|IC 0.058 . PcyM_0417200 1055 CEANWSK|CE 0.067 . PcyM_0417200 1071 CLFEHGK|DN 0.076 . ____________________________^_________________

  • Fasta :-

    >PcyM_0417200 ATGAAGGCCCGCCTTTCCTTAATCCTAATTTTATGTGTCGTGTGCAGGGACTGTGCAGTG CGATGCACGGGTACCAATGACAATCCAGGAGCAGAAACAGGAAAACAAGCAGAAGAACGA ACAGAAGCAGGAGGAGGACCAGGAGGAGTAGAAGGAACAGGAGCAGGAGCACAAGGAGTA GTAGGAGCAGCAGGAGGAGGAGTAGCAGGAACAGGAGCAGTACCAGGACAAGGAGGAGCA GTACCAGGACCAGGATCAGGAGAAGCAGTGAGCTTAAGCCAGGATGCAGGTGATACCCCA AGGGAGGGACAGCCGGTAGCCTCACAAGATGGCGCACTGCCAGCAGAAAATTCCGAAGAC GCACAAGGACGCACTGACGAAACTTCCAGCAATTCTGTTGATAGTCCTAGCCCAGATTCG AATCCAAATCCAGTTGTAGACAACGCCGAAGCAGTAACGGTAACAGCTCCGTCCGAAGGC CCCAAAGAGGAGATCCCCGTAAAGTCGTCGCTCCTGAAGGGCTACAAGGGGGTGAAAGTG ACAGGGCCGTGCAGCGCAAGCTTCCTCGTTTTCTTCGCCCCGTATCTGTTCATCGATGTG GACGCGGAGAGTAGTAACATTTACCTAGGAACCGACTTGAGCGATCTAGAAGTCACAGAG AAAATGGGTGTAGGAGAAAACAATACAAATAAATGCGATGATGGAAAGACATTCAAATTT GTTGCGCTCATAGGAGATGACCACTTGACCATTAAGTGGAAGGTCTACGACCCGAAAGTT CAAACGCCACCCCAAGATGACACAGCGGAAATGAGAAAGTACGTAATGAAAAGCCTGAAT GGAGAATTCACCTCTGTGCAAGTACACACCGTGATCCAGCAAAACGGCTCCAATGTGTTT GAAAGCAAAAACTATGCCTTGAGTAACGACATGCCTGAACAATGCGACGCAATAGCTACC AACTGCTTCCTCAGTGGAAGTGTGTATATAGAAAAGTGTTACAGATGCACCCTGAAAATG AAGAAATTGAATCCATCGGATGTTTGCTACAATTATATTCCCAAGGTGGAAAATGCACCC AGTCAGGAGAGCATTTCCGCCCAGGCAAGCGATGAAGAGTCCATGCAAGAGAAGTTGGCA GCTTCGATTGGTATGATCCTACAAGGGATGTACAAAAAAGGAGAAACTGGTCTCAACGAG TTGCTTATCTTCGACGAAGCAGATGCAGCTTTGAAAGAGGAACTGCTAAATTATTGCGCC TTGATGAAGGAGGTGGATACCAGTGGAGTGTTAGAAAACTACGAATTGGGCAGTGAAGAA AACGTGTTTGCCAACATAACTAACATGCTACAGAAGAACAGTGACTATTCCGTGTCGTCA TTACAGAACAAACTAAAGAATCCCGCTATGTGTTTGAAAAATGCGGACGAGTGGGTAGGT AGCAAAATGGGATTAGTGCTTCCTAATCTGCCATATAACCATTTGGAAGTACCCCATCCC TCGACTCCCGAAGTGGCCAACGTCGAGGACACGAGTGAGGATACACAGAGTGGCGGATAC GATGGTGTCATCGACTTCTCCACGGCAAGCAAGACAAATTTCAGCACCTCCCAATACGTA GACAAAATGCACTGCAACGGTGAGTACTGCGATAGGACGAAGGACACCAGCAGTTGCATA GCAAAGATTAAGGCGGGGGATCAGGGAGACTGCGCTACGTCTTGGCTGTTCGCCTCGAAG GTGCACCTAGAAACGATAAAGTGCATGAAGGGCCACGATCATGTTGCTAGTTCTGCTCTC TATGTGGCTAACTGTTCCGGTAAAGAAGCGAAGGACAAGTGTCAAACTCCGTCGAATCCG CTAGACTTTTTGAATACCCTGGAGGAGACCAAATTTTTGCCAGCTGAGTCGGACCTCCCA TACTCTTACAAAGAGGTGAATAACGTCTGTCCGGAGCCGAAGAGTCACTGGCAAAACTTA TGGGAAAATGTGAAGCTCCTAGACAAGCAGTATCAACCCAACTCGGTGAGCACCAAGGGG TACACCGCTTACCAGAGTGACCACTTCAAGGGCAACATGGACGCGTTTAACAAGTTGGTA AAATCAGAAGTGATGAACAAAGGATCCGTTATCGCTTATGTGAAGGCACAAGGAGTGATG ACGTACGACCTGAATGGGAAGAAGGTACTCTCTCTCTGTGGAGGTGAAACGCCCGACCTG GCTGTCAACATAGTAGGTTATGGTAACTACATAAACGGGGAGGGAGTTAAAAAGTCTTAC TGGTTGCTACAAAACAGTTGGGGCAAGCACTGGGGAGACAAAGGCAAGTTTAAGGTCGAC ATGGATGGTCCTCCTGGATGCCAGCACAACTTCATCCACACCGCTGCTGTCTTCAACGTG GACATCCCCGTGGTGGAAAAACCCACAAAGGAAGACGCCCAGATATACAACTACTACTTG AAGAGCTCCCCCGATTTCTGGGGCAACATCTACTATAAAAACGTCGGCGGTCAGACGAAT ACCTCGGCAAAGAACGCAACGGGGGTGGCCAACGAATCGGTGCTGCACGGACAAGCAGAT ACAGAGGTGGAAGTAAAGGTTGCTGGAGAGGATCCTGCTACTCCACTCAGTACACAGGCA ACAGGAGGAGCGACAGCTGGGCAAGTATCTACTGTTGTTCCGTCTTTACCTGTACAAGTG GAAGTAACCGTAGCACGAAACGTGGGTGCGCCAGGAGATCAGGCAGGATCACCAGGACCA GCAGGACCAACAGGACCAGCAGGATCACCAGGATCACCAGGACAAGAAGGACAAGAAGGA CCAGCAGGACCACCCGGAACACCAGGACCAGAAGGACCAGAAGGATCAGCAGGACCAACA GGGCCAGAAGGACCAGAAGGATCAGCAGGACCAACAGGGCCACCAGGACCATCTGGCACG CCCGGAACAGAAGGTCAGCCCGGCACAGCACCCGAAGCCGCTGTGCTAGACACCCAAGTA TCACATGTCCTAAAGTACATTAAAAAGAACAAGGTGAAGATGAACGTGGTCTCGTACAAG AATCACGAGGCTATCACCACTGGACATGACTGCTGGAGATCCTACTCAGTCAATCCAGAC AAGTACGAAGAGTGTGTAAAGATATGCGAAGCTAACTGGAGCAAATGTGAAAATGATGTA GCTCCGGGATTCTGTTTATTTGAACATGGAAAGGATAATGATTGTTTCTTCTGCTATGTG TAA
  • Download Fasta

  • Fasta :-

    MKARLSLILILCVVCRDCAVRCTGTNDNPGAETGKQAEERTEAGGGPGGVEGTGAGAQGV VGAAGGGVAGTGAVPGQGGAVPGPGSGEAVSLSQDAGDTPREGQPVASQDGALPAENSED AQGRTDETSSNSVDSPSPDSNPNPVVDNAEAVTVTAPSEGPKEEIPVKSSLLKGYKGVKV TGPCSASFLVFFAPYLFIDVDAESSNIYLGTDLSDLEVTEKMGVGENNTNKCDDGKTFKF VALIGDDHLTIKWKVYDPKVQTPPQDDTAEMRKYVMKSLNGEFTSVQVHTVIQQNGSNVF ESKNYALSNDMPEQCDAIATNCFLSGSVYIEKCYRCTLKMKKLNPSDVCYNYIPKVENAP SQESISAQASDEESMQEKLAASIGMILQGMYKKGETGLNELLIFDEADAALKEELLNYCA LMKEVDTSGVLENYELGSEENVFANITNMLQKNSDYSVSSLQNKLKNPAMCLKNADEWVG SKMGLVLPNLPYNHLEVPHPSTPEVANVEDTSEDTQSGGYDGVIDFSTASKTNFSTSQYV DKMHCNGEYCDRTKDTSSCIAKIKAGDQGDCATSWLFASKVHLETIKCMKGHDHVASSAL YVANCSGKEAKDKCQTPSNPLDFLNTLEETKFLPAESDLPYSYKEVNNVCPEPKSHWQNL WENVKLLDKQYQPNSVSTKGYTAYQSDHFKGNMDAFNKLVKSEVMNKGSVIAYVKAQGVM TYDLNGKKVLSLCGGETPDLAVNIVGYGNYINGEGVKKSYWLLQNSWGKHWGDKGKFKVD MDGPPGCQHNFIHTAAVFNVDIPVVEKPTKEDAQIYNYYLKSSPDFWGNIYYKNVGGQTN TSAKNATGVANESVLHGQADTEVEVKVAGEDPATPLSTQATGGATAGQVSTVVPSLPVQV EVTVARNVGAPGDQAGSPGPAGPTGPAGSPGSPGQEGQEGPAGPPGTPGPEGPEGSAGPT GPEGPEGSAGPTGPPGPSGTPGTEGQPGTAPEAAVLDTQVSHVLKYIKKNKVKMNVVSYK NHEAITTGHDCWRSYSVNPDKYEECVKICEANWSKCENDVAPGFCLFEHGKDNDCFFCYV

  • title: active site
  • coordinates: Q568,S574,L740,N765
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0417200137 SVDSPSPDSN0.992unspPcyM_0417200137 SVDSPSPDSN0.992unspPcyM_0417200137 SVDSPSPDSN0.992unspPcyM_0417200370 SSAQASDEES0.997unspPcyM_0417200842 SQTNTSAKNA0.991unspPcyM_04172001018 SMNVVSYKNH0.992unspPcyM_041720099 TDAGDTPREG0.996unspPcyM_0417200135 SNSVDSPSPD0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India