PcyM_0505200 | rhomboid protease ROM3, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_0505200OTHER0.9999830.0000020.000015
No Results

  • Fasta :-

    >PcyM_0505200 MLREDLQRGGNAQGASENVPLMEGSPKGGTFYDMLFPDMSPRRIIVWISFAQIIIYILSC LLSENLTAPSVQALMFLGATYGPAIKQGEIWRLLFPIFLHANWWHLIINIMCMLNLGLVI ESKYKKGNFFFLYFLSGVVGNILTTICNPCQLAVGASTSGFGLIGFSILEIFLAWANLSR RAKNYYIFNVSVFVLFFLFVSFSPTVDFFGHIGGFLCGAFLACHYNKAMGYDFFQTSLYY SFACICALIVLYLPVRLYVTDMPCVLFH
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0505200.fa Sequence name : PcyM_0505200 Sequence length : 268 VALUES OF COMPUTED PARAMETERS Coef20 : 3.174 CoefTot : 0.257 ChDiff : 2 ZoneTo : 3 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.347 2.341 0.490 0.842 MesoH : 1.081 1.268 0.099 0.547 MuHd_075 : 41.006 21.680 10.097 8.400 MuHd_095 : 15.902 9.422 3.982 4.603 MuHd_100 : 21.381 14.915 6.532 4.677 MuHd_105 : 24.128 17.683 7.946 4.531 Hmax_075 : 0.700 3.733 -1.117 2.823 Hmax_095 : -7.437 -1.575 -3.953 1.146 Hmax_100 : -3.900 1.200 -2.563 1.390 Hmax_105 : 5.483 5.483 -0.303 2.648 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8387 0.1613 DFMC : 0.8342 0.1658
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 268 PcyM_0505200 MLREDLQRGGNAQGASENVPLMEGSPKGGTFYDMLFPDMSPRRIIVWISFAQIIIYILSCLLSENLTAPSVQALMFLGAT 80 YGPAIKQGEIWRLLFPIFLHANWWHLIINIMCMLNLGLVIESKYKKGNFFFLYFLSGVVGNILTTICNPCQLAVGASTSG 160 FGLIGFSILEIFLAWANLSRRAKNYYIFNVSVFVLFFLFVSFSPTVDFFGHIGGFLCGAFLACHYNKAMGYDFFQTSLYY 240 SFACICALIVLYLPVRLYVTDMPCVLFH 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0505200 3 ----MLR|ED 0.073 . PcyM_0505200 8 LREDLQR|GG 0.117 . PcyM_0505200 27 LMEGSPK|GG 0.066 . PcyM_0505200 42 FPDMSPR|RI 0.092 . PcyM_0505200 43 PDMSPRR|II 0.131 . PcyM_0505200 86 TYGPAIK|QG 0.060 . PcyM_0505200 92 KQGEIWR|LL 0.100 . PcyM_0505200 123 GLVIESK|YK 0.065 . PcyM_0505200 125 VIESKYK|KG 0.056 . PcyM_0505200 126 IESKYKK|GN 0.117 . PcyM_0505200 180 AWANLSR|RA 0.078 . PcyM_0505200 181 WANLSRR|AK 0.146 . PcyM_0505200 183 NLSRRAK|NY 0.170 . PcyM_0505200 227 LACHYNK|AM 0.079 . PcyM_0505200 256 VLYLPVR|LY 0.073 . ____________________________^_________________

  • Fasta :-

    >PcyM_0505200 ATGCTTCGCGAAGATTTACAGAGGGGAGGGAACGCCCAGGGGGCAAGTGAAAATGTGCCC CTCATGGAGGGAAGCCCCAAGGGGGGCACCTTTTACGACATGCTCTTTCCGGACATGTCC CCGAGGAGAATCATCGTATGGATTAGCTTCGCCCAAATTATCATTTACATTTTGAGTTGC CTCTTAAGCGAAAACTTAACGGCCCCCAGCGTGCAGGCGCTGATGTTCCTGGGAGCCACG TATGGCCCCGCCATCAAGCAAGGAGAAATCTGGAGACTGCTATTCCCAATTTTCCTGCAT GCGAATTGGTGGCACTTAATAATTAACATAATGTGCATGCTGAATTTAGGCCTAGTGATA GAGAGTAAATACAAGAAGGGGAATTTTTTCTTCCTTTATTTTTTGTCAGGGGTGGTTGGA AATATATTAACGACCATCTGCAATCCGTGTCAGCTAGCTGTGGGGGCATCAACAAGTGGA TTCGGACTGATTGGATTTTCCATCCTCGAAATATTTTTAGCCTGGGCGAATTTGTCCAGG AGGGCTAAGAACTACTATATTTTTAATGTGTCTGTTTTTGTGCTATTTTTTTTGTTTGTT AGTTTTTCTCCCACCGTCGATTTTTTTGGGCACATTGGCGGCTTCCTCTGCGGGGCCTTC CTGGCCTGCCACTACAACAAGGCCATGGGATACGACTTCTTCCAGACGTCCCTGTACTAC AGCTTCGCTTGCATATGCGCCCTAATTGTTTTGTACCTCCCAGTTCGGCTCTACGTGACG GACATGCCATGTGTACTTTTCCACTAG
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  • Fasta :-

    MLREDLQRGGNAQGASENVPLMEGSPKGGTFYDMLFPDMSPRRIIVWISFAQIIIYILSC LLSENLTAPSVQALMFLGATYGPAIKQGEIWRLLFPIFLHANWWHLIINIMCMLNLGLVI ESKYKKGNFFFLYFLSGVVGNILTTICNPCQLAVGASTSGFGLIGFSILEIFLAWANLSR RAKNYYIFNVSVFVLFFLFVSFSPTVDFFGHIGGFLCGAFLACHYNKAMGYDFFQTSLYY SFACICALIVLYLPVRLYVTDMPCVLFH

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India