PcyM_0619300 | tRNA N6-adenosine threonylcarbamoyltransferase, putative

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_IDPredictionOTHERSPmTPCS_Position
PcyM_0619300OTHER0.9997220.0001530.000126
No Results

  • Fasta :-

    >PcyM_0619300 MINDSTAGGPSTLPQPPKYILGLEGSANKLGVSIINSDLKILMNMRRTYVSEIGCGFIPR QINAHHKYYIIEMIKECLNKLKIKITDIHLICYTKGPGIGSALYIAYNISKFFSLLFNIP VIGVNHCIAHIEMGIFITKLYHPIILYVSGSNTQIIYFNNHKKRYEIIGETLDIAIGNVI DRSARILRISNSPSPGKKKKKKKKNDSIVVSFAGREPISGDPYGGHIPEGEARDTAPQEH SAANEPNTPNEPNTPNKPSAPNDPNGPNKPSTPNDPNTPNDPNTPNKPNKPMREDPCDYT ELLFFPYTIKGMDISFSGYDYYVSKYFSRYLTKRGKKGKGEDGGKPPLGDQNAPKRKKRH DGEEASEGKHNQGGKSDACDVNGEEEDYGEGDADEGNAIRGDAIRGDAIGGDANDGAAPG GTQLFPQPNLSIHAGVQGSSYYEENVICSIGGKKNYGEDDHYAEEDDGAIETESDFFDSS SDETAAGSDKGGGNLCKAPSEEHPHSGANLTDEEKRKIQICYSLQHHIFSMLIEITERAI AFTNSKEVIIVGGVGCNVFLQNMMKKMAKQKNIKIGFMDHSYCVDNGAMIAYTGYLEYLN TKNKEIYNFNNISIHQRYRTDDVLVTWR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0619300.fa Sequence name : PcyM_0619300 Sequence length : 628 VALUES OF COMPUTED PARAMETERS Coef20 : 2.918 CoefTot : -4.263 ChDiff : -9 ZoneTo : 71 KR : 7 DE : 4 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.294 1.612 0.156 0.644 MesoH : 0.481 0.894 -0.102 0.453 MuHd_075 : 37.053 19.277 9.050 9.168 MuHd_095 : 31.444 23.555 10.243 7.869 MuHd_100 : 28.302 20.068 8.300 7.196 MuHd_105 : 27.230 24.077 8.656 8.280 Hmax_075 : 15.750 16.683 4.200 6.545 Hmax_095 : 8.313 16.012 1.693 5.513 Hmax_100 : 4.900 14.800 1.660 5.520 Hmax_105 : 6.500 12.250 1.884 4.920 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9843 0.0157 DFMC : 0.9932 0.0068
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 628 PcyM_0619300 MINDSTAGGPSTLPQPPKYILGLEGSANKLGVSIINSDLKILMNMRRTYVSEIGCGFIPRQINAHHKYYIIEMIKECLNK 80 LKIKITDIHLICYTKGPGIGSALYIAYNISKFFSLLFNIPVIGVNHCIAHIEMGIFITKLYHPIILYVSGSNTQIIYFNN 160 HKKRYEIIGETLDIAIGNVIDRSARILRISNSPSPGKKKKKKKKNDSIVVSFAGREPISGDPYGGHIPEGEARDTAPQEH 240 SAANEPNTPNEPNTPNKPSAPNDPNGPNKPSTPNDPNTPNDPNTPNKPNKPMREDPCDYTELLFFPYTIKGMDISFSGYD 320 YYVSKYFSRYLTKRGKKGKGEDGGKPPLGDQNAPKRKKRHDGEEASEGKHNQGGKSDACDVNGEEEDYGEGDADEGNAIR 400 GDAIRGDAIGGDANDGAAPGGTQLFPQPNLSIHAGVQGSSYYEENVICSIGGKKNYGEDDHYAEEDDGAIETESDFFDSS 480 SDETAAGSDKGGGNLCKAPSEEHPHSGANLTDEEKRKIQICYSLQHHIFSMLIEITERAIAFTNSKEVIIVGGVGCNVFL 560 QNMMKKMAKQKNIKIGFMDHSYCVDNGAMIAYTGYLEYLNTKNKEIYNFNNISIHQRYRTDDVLVTWR 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................................P......................................... 400 ................................................................................ 480 ................................................................................ 560 .................................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PcyM_0619300 18 TLPQPPK|YI 0.090 . PcyM_0619300 29 LEGSANK|LG 0.054 . PcyM_0619300 40 IINSDLK|IL 0.068 . PcyM_0619300 46 KILMNMR|RT 0.085 . PcyM_0619300 47 ILMNMRR|TY 0.126 . PcyM_0619300 60 GCGFIPR|QI 0.111 . PcyM_0619300 67 QINAHHK|YY 0.081 . PcyM_0619300 75 YIIEMIK|EC 0.056 . PcyM_0619300 80 IKECLNK|LK 0.068 . PcyM_0619300 82 ECLNKLK|IK 0.067 . PcyM_0619300 84 LNKLKIK|IT 0.080 . PcyM_0619300 95 HLICYTK|GP 0.066 . PcyM_0619300 111 IAYNISK|FF 0.069 . PcyM_0619300 139 MGIFITK|LY 0.066 . PcyM_0619300 162 IYFNNHK|KR 0.059 . PcyM_0619300 163 YFNNHKK|RY 0.159 . PcyM_0619300 164 FNNHKKR|YE 0.405 . PcyM_0619300 182 IGNVIDR|SA 0.187 . PcyM_0619300 185 VIDRSAR|IL 0.258 . PcyM_0619300 188 RSARILR|IS 0.192 . PcyM_0619300 197 NSPSPGK|KK 0.059 . PcyM_0619300 198 SPSPGKK|KK 0.131 . PcyM_0619300 199 PSPGKKK|KK 0.116 . PcyM_0619300 200 SPGKKKK|KK 0.164 . PcyM_0619300 201 PGKKKKK|KK 0.090 . PcyM_0619300 202 GKKKKKK|KK 0.173 . PcyM_0619300 203 KKKKKKK|KN 0.185 . PcyM_0619300 204 KKKKKKK|ND 0.170 . PcyM_0619300 215 VVSFAGR|EP 0.088 . PcyM_0619300 233 IPEGEAR|DT 0.226 . PcyM_0619300 257 EPNTPNK|PS 0.075 . PcyM_0619300 269 DPNGPNK|PS 0.077 . PcyM_0619300 287 DPNTPNK|PN 0.076 . PcyM_0619300 290 TPNKPNK|PM 0.083 . PcyM_0619300 293 KPNKPMR|ED 0.110 . PcyM_0619300 310 FFPYTIK|GM 0.063 . PcyM_0619300 325 YDYYVSK|YF 0.078 . PcyM_0619300 329 VSKYFSR|YL 0.109 . PcyM_0619300 333 FSRYLTK|RG 0.061 . PcyM_0619300 334 SRYLTKR|GK 0.295 . PcyM_0619300 336 YLTKRGK|KG 0.059 . PcyM_0619300 337 LTKRGKK|GK 0.317 . PcyM_0619300 339 KRGKKGK|GE 0.110 . PcyM_0619300 345 KGEDGGK|PP 0.057 . PcyM_0619300 355 GDQNAPK|RK 0.066 . PcyM_0619300 356 DQNAPKR|KK 0.158 . PcyM_0619300 357 QNAPKRK|KR 0.152 . PcyM_0619300 358 NAPKRKK|RH 0.118 . PcyM_0619300 359 APKRKKR|HD 0.769 *ProP* PcyM_0619300 369 EEASEGK|HN 0.068 . PcyM_0619300 375 KHNQGGK|SD 0.083 . PcyM_0619300 400 DEGNAIR|GD 0.081 . PcyM_0619300 405 IRGDAIR|GD 0.126 . PcyM_0619300 453 ICSIGGK|KN 0.068 . PcyM_0619300 454 CSIGGKK|NY 0.093 . PcyM_0619300 490 TAAGSDK|GG 0.071 . PcyM_0619300 497 GGGNLCK|AP 0.076 . PcyM_0619300 515 NLTDEEK|RK 0.056 . PcyM_0619300 516 LTDEEKR|KI 0.136 . PcyM_0619300 517 TDEEKRK|IQ 0.083 . PcyM_0619300 538 LIEITER|AI 0.074 . PcyM_0619300 546 IAFTNSK|EV 0.077 . PcyM_0619300 565 FLQNMMK|KM 0.064 . PcyM_0619300 566 LQNMMKK|MA 0.154 . PcyM_0619300 569 MMKKMAK|QK 0.079 . PcyM_0619300 571 KKMAKQK|NI 0.096 . PcyM_0619300 574 AKQKNIK|IG 0.059 . PcyM_0619300 602 LEYLNTK|NK 0.060 . PcyM_0619300 604 YLNTKNK|EI 0.068 . PcyM_0619300 617 NISIHQR|YR 0.108 . PcyM_0619300 619 SIHQRYR|TD 0.101 . PcyM_0619300 628 DVLVTWR|-- 0.080 . ____________________________^_________________

  • Fasta :-

    >PcyM_0619300 ATGATAAATGACTCCACCGCGGGGGGTCCCAGTACCCTGCCGCAACCACCCAAGTACATC CTGGGGCTAGAAGGAAGTGCGAACAAACTGGGGGTCAGCATCATAAATAGTGACTTAAAA ATTCTGATGAATATGAGAAGAACGTACGTCTCCGAAATTGGCTGCGGATTTATCCCAAGA CAAATTAACGCGCACCACAAGTACTACATCATCGAGATGATTAAAGAATGTCTTAATAAA TTGAAGATAAAAATAACAGACATACATTTAATATGCTATACAAAAGGGCCAGGAATTGGC TCCGCTCTCTACATTGCCTACAATATAAGTAAATTTTTTTCCCTCCTCTTCAATATTCCC GTCATCGGAGTCAATCACTGCATTGCCCACATCGAAATGGGCATTTTTATAACCAAGCTT TATCACCCCATTATTTTATACGTCAGTGGAAGCAACACACAGATCATTTATTTCAACAAT CACAAGAAGAGGTACGAAATCATCGGAGAGACCTTAGACATAGCTATTGGAAATGTCATC GACAGATCTGCGAGGATTCTCAGAATTTCAAATTCTCCTTCTCCTGGAAAAAAAAAAAAA AAAAAAAAAAAAAATGACTCAATAGTTGTGTCTTTTGCGGGGAGAGAACCAATAAGCGGG GACCCTTATGGTGGCCACATTCCGGAGGGGGAAGCGAGGGACACTGCCCCTCAGGAGCAC AGCGCTGCAAATGAGCCCAATACGCCAAATGAGCCCAATACGCCAAATAAGCCCAGTGCG CCAAATGATCCCAACGGGCCAAATAAGCCCAGTACGCCAAATGACCCCAACACGCCTAAT GATCCCAACACGCCTAATAAGCCCAATAAGCCCATGAGGGAGGACCCGTGTGACTACACC GAGCTGCTCTTCTTCCCCTACACCATAAAAGGGATGGACATTTCGTTCAGCGGGTACGAC TACTACGTGAGCAAGTATTTCTCCAGGTATTTAACCAAGCGAGGCAAAAAGGGGAAGGGC GAAGACGGGGGGAAGCCACCACTGGGCGATCAAAACGCCCCAAAAAGGAAGAAGCGGCAC GACGGGGAAGAAGCGAGTGAGGGGAAGCACAACCAGGGGGGGAAAAGCGATGCGTGCGAT GTCAATGGTGAGGAAGAAGACTATGGAGAGGGCGACGCGGACGAAGGAAACGCAATCAGA GGCGACGCAATCAGAGGCGACGCAATCGGAGGCGACGCAAATGATGGCGCTGCGCCCGGC GGCACGCAACTCTTTCCGCAGCCCAACTTGAGCATTCACGCGGGCGTGCAGGGCAGCTCC TACTACGAAGAGAATGTCATCTGCAGCATCGGCGGGAAGAAGAACTACGGGGAGGACGAC CACTACGCGGAGGAGGACGACGGCGCCATCGAGACGGAGAGCGATTTTTTTGACTCCAGC TCGGACGAAACCGCGGCTGGGAGCGACAAAGGGGGGGGGAACCTTTGCAAGGCCCCCAGC GAAGAGCATCCACATAGCGGCGCCAACCTGACGGACGAAGAAAAGCGGAAAATACAAATC TGCTACAGCCTGCAACACCACATATTCAGCATGCTCATCGAAATCACCGAACGAGCCATC GCCTTCACGAACAGCAAGGAGGTGATCATTGTGGGGGGAGTTGGCTGCAACGTTTTCTTA CAAAATATGATGAAGAAAATGGCAAAACAGAAAAATATCAAAATTGGATTTATGGACCAC AGCTACTGTGTGGATAACGGTGCCATGATTGCCTACACGGGGTACCTTGAATATTTGAAT ACCAAAAATAAGGAAATCTACAACTTTAATAATATAAGTATCCACCAGAGGTACCGGACA GACGACGTGCTCGTGACGTGGAGGTAG
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  • Fasta :-

    MINDSTAGGPSTLPQPPKYILGLEGSANKLGVSIINSDLKILMNMRRTYVSEIGCGFIPR QINAHHKYYIIEMIKECLNKLKIKITDIHLICYTKGPGIGSALYIAYNISKFFSLLFNIP VIGVNHCIAHIEMGIFITKLYHPIILYVSGSNTQIIYFNNHKKRYEIIGETLDIAIGNVI DRSARILRISNSPSPGKKKKKKKKNDSIVVSFAGREPISGDPYGGHIPEGEARDTAPQEH SAANEPNTPNEPNTPNKPSAPNDPNGPNKPSTPNDPNTPNDPNTPNKPNKPMREDPCDYT ELLFFPYTIKGMDISFSGYDYYVSKYFSRYLTKRGKKGKGEDGGKPPLGDQNAPKRKKRH DGEEASEGKHNQGGKSDACDVNGEEEDYGEGDADEGNAIRGDAIRGDAIGGDANDGAAPG GTQLFPQPNLSIHAGVQGSSYYEENVICSIGGKKNYGEDDHYAEEDDGAIETESDFFDSS SDETAAGSDKGGGNLCKAPSEEHPHSGANLTDEEKRKIQICYSLQHHIFSMLIEITERAI AFTNSKEVIIVGGVGCNVFLQNMMKKMAKQKNIKIGFMDHSYCVDNGAMIAYTGYLEYLN TKNKEIYNFNNISIHQRYRTDDVLVTWR

  • title: nucleotide binding site
  • coordinates: E24,G25,S26,A27,K29,G31,H126,V148,S149,G150,S151
No Results
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India