PcyM_0702100 | signal peptidase complex subunit 3, putative

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  • Fasta :-

    >PcyM_0702100 MDNVLNRLNVLSYSMALCFFALCLFNYGTSFYLFDEKEMSTNIKVKSVKRLVYNRHIKGD EAVLSLDLSYDMSKAFNWNLKQLFLYVLVTYETPEKVKNEVIIQDYIITNKNVAKKSYKN FLTKYSLKDYNNGLRNNNINLQICYKYMPIVGLSRSYEGAKISYKLPGEYFDNLPSNYPL YYPDK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0702100.fa Sequence name : PcyM_0702100 Sequence length : 185 VALUES OF COMPUTED PARAMETERS Coef20 : 4.546 CoefTot : 0.112 ChDiff : 7 ZoneTo : 34 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.835 1.935 0.374 0.628 MesoH : -0.930 0.223 -0.487 0.138 MuHd_075 : 27.070 13.883 6.140 5.189 MuHd_095 : 23.643 15.418 5.359 5.146 MuHd_100 : 26.225 19.147 7.628 4.962 MuHd_105 : 26.909 22.516 8.762 4.750 Hmax_075 : 12.250 15.167 2.191 5.087 Hmax_095 : 17.500 17.500 2.678 5.933 Hmax_100 : 18.700 19.500 4.217 6.060 Hmax_105 : 4.637 13.200 1.626 2.010 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8562 0.1438 DFMC : 0.7517 0.2483
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 185 PcyM_0702100 MDNVLNRLNVLSYSMALCFFALCLFNYGTSFYLFDEKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNL 80 KQLFLYVLVTYETPEKVKNEVIIQDYIITNKNVAKKSYKNFLTKYSLKDYNNGLRNNNINLQICYKYMPIVGLSRSYEGA 160 KISYKLPGEYFDNLPSNYPLYYPDK 240 ................................................................................ 80 ................................................................................ 160 ......................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0702100 7 MDNVLNR|LN 0.086 . PcyM_0702100 37 FYLFDEK|EM 0.060 . PcyM_0702100 44 EMSTNIK|VK 0.071 . PcyM_0702100 46 STNIKVK|SV 0.139 . PcyM_0702100 49 IKVKSVK|RL 0.064 . PcyM_0702100 50 KVKSVKR|LV 0.163 . PcyM_0702100 55 KRLVYNR|HI 0.112 . PcyM_0702100 58 VYNRHIK|GD 0.197 . PcyM_0702100 74 LSYDMSK|AF 0.071 . PcyM_0702100 81 AFNWNLK|QL 0.066 . PcyM_0702100 96 TYETPEK|VK 0.059 . PcyM_0702100 98 ETPEKVK|NE 0.059 . PcyM_0702100 111 DYIITNK|NV 0.061 . PcyM_0702100 115 TNKNVAK|KS 0.083 . PcyM_0702100 116 NKNVAKK|SY 0.181 . PcyM_0702100 119 VAKKSYK|NF 0.062 . PcyM_0702100 124 YKNFLTK|YS 0.071 . PcyM_0702100 128 LTKYSLK|DY 0.080 . PcyM_0702100 135 DYNNGLR|NN 0.081 . PcyM_0702100 146 NLQICYK|YM 0.067 . PcyM_0702100 155 PIVGLSR|SY 0.116 . PcyM_0702100 161 RSYEGAK|IS 0.064 . PcyM_0702100 165 GAKISYK|LP 0.071 . PcyM_0702100 185 PLYYPDK|-- 0.067 . ____________________________^_________________

  • Fasta :-

    >PcyM_0702100 ATGGACAACGTGCTGAATAGGCTAAACGTCCTTTCCTATTCCATGGCCTTATGTTTTTTT GCCCTATGCCTTTTCAACTATGGAACTTCCTTTTATTTATTCGACGAGAAAGAAATGTCG ACGAATATAAAAGTAAAAAGTGTGAAGAGGTTGGTGTATAACCGGCACATAAAAGGGGAC GAAGCCGTGCTGTCGCTAGACCTATCATATGACATGAGCAAAGCATTTAATTGGAACTTG AAGCAGCTGTTTCTGTATGTTCTAGTAACGTATGAAACGCCAGAAAAAGTAAAAAACGAA GTTATCATACAGGATTACATAATAACTAATAAAAATGTGGCCAAAAAAAGTTATAAAAAT TTCCTCACCAAATATTCTCTTAAAGATTATAATAATGGATTAAGAAATAATAATATCAAT TTACAAATCTGTTATAAATATATGCCCATAGTTGGTTTGTCCAGATCTTATGAGGGTGCT AAAATTTCTTACAAATTGCCTGGAGAGTATTTTGACAATTTGCCGTCTAATTATCCGTTG TATTACCCGGACAAGTGA
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  • Fasta :-

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IDSitePeptideScoreMethod
PcyM_070210047 SIKVKSVKRL0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India