PcyM_0716600 | eukaryotic translation initiation factor 3 subunit F, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_0716600OTHER0.9931630.0004130.006425
No Results

  • Fasta :-

    >PcyM_0716600 MSVNRYNFKALSSLLKDKTPQHFNILPHTSIKCVVHPAVIFTILDAYLRRDEDQTHVIGT LMGCVIDANLIEISDCFVDKHSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGS ELSELSCAVHGWFKEHNSISKFYPHSPLNEPIHLLVDAALESGFLNIKAYVQLPITLVKE YFVHFHEIQAELLPSNVERAEVLQYQEKGLTGKDKDSHMHGNKNSVLPNDMNEMSLKKLL IMLKQCKSYVQDVIDKKKKGNLEVGRYLHKVFSNDSFSTLEKFDSINESILQDNLMISYL SNLAHLQFLIAEKLNASSLQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0716600.fa Sequence name : PcyM_0716600 Sequence length : 320 VALUES OF COMPUTED PARAMETERS Coef20 : 4.088 CoefTot : -1.405 ChDiff : -5 ZoneTo : 44 KR : 5 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.659 0.134 0.591 MesoH : -0.415 0.381 -0.401 0.261 MuHd_075 : 26.607 25.653 9.089 6.496 MuHd_095 : 32.020 22.916 9.626 7.229 MuHd_100 : 35.614 19.749 11.498 6.152 MuHd_105 : 28.840 14.100 10.487 4.517 Hmax_075 : 6.183 19.250 0.893 7.320 Hmax_095 : 9.625 12.600 2.459 2.625 Hmax_100 : 12.700 12.600 2.924 3.710 Hmax_105 : 13.417 9.300 2.999 3.750 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6697 0.3303 DFMC : 0.6451 0.3549
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 320 PcyM_0716600 MSVNRYNFKALSSLLKDKTPQHFNILPHTSIKCVVHPAVIFTILDAYLRRDEDQTHVIGTLMGCVIDANLIEISDCFVDK 80 HSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGSELSELSCAVHGWFKEHNSISKFYPHSPLNEPIHLLVDAAL 160 ESGFLNIKAYVQLPITLVKEYFVHFHEIQAELLPSNVERAEVLQYQEKGLTGKDKDSHMHGNKNSVLPNDMNEMSLKKLL 240 IMLKQCKSYVQDVIDKKKKGNLEVGRYLHKVFSNDSFSTLEKFDSINESILQDNLMISYLSNLAHLQFLIAEKLNASSLQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0716600 5 --MSVNR|YN 0.127 . PcyM_0716600 9 VNRYNFK|AL 0.078 . PcyM_0716600 16 ALSSLLK|DK 0.082 . PcyM_0716600 18 SSLLKDK|TP 0.059 . PcyM_0716600 32 LPHTSIK|CV 0.080 . PcyM_0716600 49 ILDAYLR|RD 0.082 . PcyM_0716600 50 LDAYLRR|DE 0.192 . PcyM_0716600 80 SDCFVDK|HS 0.070 . PcyM_0716600 93 GFLQIIK|DH 0.063 . PcyM_0716600 103 ETMYELK|QK 0.065 . PcyM_0716600 105 MYELKQK|IR 0.060 . PcyM_0716600 107 ELKQKIR|PR 0.119 . PcyM_0716600 109 KQKIRPR|DQ 0.125 . PcyM_0716600 134 AVHGWFK|EH 0.057 . PcyM_0716600 141 EHNSISK|FY 0.068 . PcyM_0716600 168 SGFLNIK|AY 0.059 . PcyM_0716600 179 LPITLVK|EY 0.069 . PcyM_0716600 199 LPSNVER|AE 0.107 . PcyM_0716600 208 VLQYQEK|GL 0.073 . PcyM_0716600 213 EKGLTGK|DK 0.081 . PcyM_0716600 215 GLTGKDK|DS 0.090 . PcyM_0716600 223 SHMHGNK|NS 0.056 . PcyM_0716600 237 MNEMSLK|KL 0.071 . PcyM_0716600 238 NEMSLKK|LL 0.076 . PcyM_0716600 244 KLLIMLK|QC 0.058 . PcyM_0716600 247 IMLKQCK|SY 0.076 . PcyM_0716600 256 VQDVIDK|KK 0.057 . PcyM_0716600 257 QDVIDKK|KK 0.098 . PcyM_0716600 258 DVIDKKK|KG 0.080 . PcyM_0716600 259 VIDKKKK|GN 0.114 . PcyM_0716600 266 GNLEVGR|YL 0.134 . PcyM_0716600 270 VGRYLHK|VF 0.059 . PcyM_0716600 282 SFSTLEK|FD 0.083 . PcyM_0716600 313 QFLIAEK|LN 0.058 . ____________________________^_________________

  • Fasta :-

    >PcyM_0716600 ATGAGTGTCAACCGCTACAACTTCAAAGCGCTGAGCTCCCTTTTGAAGGACAAAACGCCG CAGCACTTTAACATCCTGCCGCATACCAGCATCAAGTGCGTAGTCCATCCGGCTGTAATA TTCACAATTTTGGATGCTTACCTGAGAAGAGATGAAGACCAAACACATGTCATTGGAACC CTCATGGGGTGCGTCATCGACGCGAACCTCATCGAAATTTCGGATTGCTTCGTCGATAAG CATTCCCTCAATGAAGGAGGATTCCTCCAAATCATTAAGGACCACCACGAAACGATGTAT GAGCTGAAGCAGAAGATTCGTCCCAGAGATCAGGTAGTCGGTTGGTTCTGCTCCGGTTCC GAGTTATCCGAGCTCTCCTGCGCTGTGCATGGCTGGTTTAAAGAGCACAACTCCATTTCG AAGTTCTACCCCCACTCCCCCCTAAACGAACCGATACACCTGTTAGTGGACGCTGCACTA GAAAGTGGCTTCCTTAACATCAAGGCCTACGTACAACTACCCATCACGCTGGTAAAGGAA TACTTTGTGCACTTTCACGAAATACAAGCGGAGTTACTCCCCAGTAATGTTGAAAGAGCA GAGGTGTTGCAGTACCAAGAGAAAGGCTTAACTGGCAAGGACAAAGACAGCCATATGCAT GGCAACAAAAATAGTGTCCTTCCAAACGATATGAATGAAATGTCATTAAAAAAATTATTA ATTATGTTAAAGCAGTGCAAATCGTATGTACAGGATGTTATCGATAAAAAGAAGAAGGGG AACCTAGAGGTTGGTAGATACCTACATAAGGTCTTCTCCAATGATTCTTTTTCGACTTTG GAAAAATTTGACTCAATAAATGAAAGCATCTTGCAAGACAATTTGATGATTTCATATCTA TCGAATCTTGCTCATTTGCAGTTCCTCATAGCTGAAAAGTTAAACGCATCATCATTGCAG TGA
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  • Fasta :-

    MSVNRYNFKALSSLLKDKTPQHFNILPHTSIKCVVHPAVIFTILDAYLRRDEDQTHVIGT LMGCVIDANLIEISDCFVDKHSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGS ELSELSCAVHGWFKEHNSISKFYPHSPLNEPIHLLVDAALESGFLNIKAYVQLPITLVKE YFVHFHEIQAELLPSNVERAEVLQYQEKGLTGKDKDSHMHGNKNSVLPNDMNEMSLKKLL IMLKQCKSYVQDVIDKKKKGNLEVGRYLHKVFSNDSFSTLEKFDSINESILQDNLMISYL SNLAHLQFLIAEKLNASSLQ

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India