PcyM_0735400 | mitochondrial-processing peptidase subunit beta, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_0735400mTP0.1507240.0000500.849225CS pos: 9-10. RRY-SS. Pr: 0.7543
No Results

  • Fasta :-

    >PcyM_0735400 MLGRTLRRYSSLKSLPKEILNQPITQVTELPNKLKIATVKSTCEVPTIGIWISSGSKYEN KQNNGVAHFLEHMIFKGTKKRNRIQLEKEIENMGAHLNAYTAREQTSYYCRCFKDDVKWC IELLSDILSNSIFDENLIDMEKHVILREMEEVEKSKDEVIFDKLHMTAFRDHPLGYTILG PVENIKNMNRQSIINYINTNYTSDRMVLCAVGDVKHEEVVKLAEQHFSHLKPQSANMGSA SNMGSASNTGSASNIDNVKPYFCGSEIIMRDDDSGPSAHVAVAFEGVDWKSPDSITFMLM QCIIGTYKKSEEGILPGKLSANRTINNICNKMTIGCADYFSAFNTCYNNTGLFGFYVQCD ELAVEHALGELMFGVTSLSYSITDEEVELAKIQLKTQLINMFESSSTLAEEVSRQILVYG RNIPLAEFLLRLDKIDTEEVKRVAWKYLHDREIAVAAMGALHGMPQYYDLRQKTFWLRY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0735400.fa Sequence name : PcyM_0735400 Sequence length : 479 VALUES OF COMPUTED PARAMETERS Coef20 : 4.456 CoefTot : 0.343 ChDiff : -8 ZoneTo : 17 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.182 1.141 0.080 0.502 MesoH : -0.307 0.314 -0.288 0.246 MuHd_075 : 51.636 24.248 12.449 9.084 MuHd_095 : 12.895 3.802 0.541 3.328 MuHd_100 : 26.182 13.351 5.237 6.162 MuHd_105 : 35.560 20.209 8.600 8.954 Hmax_075 : 13.300 8.400 1.238 2.835 Hmax_095 : -6.563 -0.963 -3.624 0.149 Hmax_100 : 0.500 3.900 -2.047 2.130 Hmax_105 : 10.150 9.100 1.107 4.235 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1767 0.8233 DFMC : 0.1156 0.8844 This protein is probably imported in mitochondria. f(Ser) = 0.1765 f(Arg) = 0.1765 CMi = 0.55659 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 479 PcyM_0735400 MLGRTLRRYSSLKSLPKEILNQPITQVTELPNKLKIATVKSTCEVPTIGIWISSGSKYENKQNNGVAHFLEHMIFKGTKK 80 RNRIQLEKEIENMGAHLNAYTAREQTSYYCRCFKDDVKWCIELLSDILSNSIFDENLIDMEKHVILREMEEVEKSKDEVI 160 FDKLHMTAFRDHPLGYTILGPVENIKNMNRQSIINYINTNYTSDRMVLCAVGDVKHEEVVKLAEQHFSHLKPQSANMGSA 240 SNMGSASNTGSASNIDNVKPYFCGSEIIMRDDDSGPSAHVAVAFEGVDWKSPDSITFMLMQCIIGTYKKSEEGILPGKLS 320 ANRTINNICNKMTIGCADYFSAFNTCYNNTGLFGFYVQCDELAVEHALGELMFGVTSLSYSITDEEVELAKIQLKTQLIN 400 MFESSSTLAEEVSRQILVYGRNIPLAEFLLRLDKIDTEEVKRVAWKYLHDREIAVAAMGALHGMPQYYDLRQKTFWLRY 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0

  • Fasta :-

    >PcyM_0735400 ATGCTGGGGCGAACGCTGCGGAGGTACAGCTCGCTGAAGAGCCTCCCCAAAGAAATCCTG AACCAGCCAATCACACAAGTAACCGAGTTACCCAACAAGCTGAAAATAGCTACTGTCAAA AGTACGTGCGAAGTACCTACCATAGGAATATGGATCAGTAGTGGAAGTAAATATGAAAAT AAACAGAATAATGGAGTAGCTCACTTTCTAGAGCACATGATATTTAAAGGAACTAAAAAG AGAAACCGAATCCAATTAGAGAAAGAAATCGAAAATATGGGGGCACATCTAAATGCATAC ACAGCTAGAGAACAGACTAGTTACTACTGTAGGTGTTTTAAGGACGATGTAAAATGGTGC ATAGAGCTCTTGAGTGATATTCTATCCAACAGTATCTTTGATGAAAATCTAATCGATATG GAAAAACATGTCATTCTGAGAGAGATGGAAGAGGTAGAGAAATCCAAAGATGAAGTAATT TTCGATAAGCTACACATGACTGCATTTCGGGATCATCCTTTAGGGTACACCATTTTAGGA CCCGTAGAAAATATAAAAAATATGAACCGACAGAGCATTATTAACTACATCAATACGAAT TATACTTCGGACAGGATGGTTCTCTGTGCAGTGGGTGATGTGAAGCACGAAGAGGTGGTC AAGCTAGCCGAGCAGCACTTTAGTCATTTAAAGCCGCAATCTGCCAACATGGGTTCTGCC TCTAACATGGGATCTGCCTCCAACACGGGTTCTGCATCTAACATAGATAATGTAAAACCA TACTTTTGTGGCTCCGAAATTATCATGAGAGATGATGACTCAGGACCTAGTGCACATGTA GCTGTGGCCTTTGAAGGAGTTGATTGGAAGTCCCCTGACTCTATCACCTTCATGTTAATG CAATGCATTATTGGAACTTACAAAAAAAGTGAAGAAGGAATACTACCAGGAAAGCTTTCC GCCAACAGAACCATAAATAATATCTGCAATAAAATGACAATAGGATGTGCAGATTATTTT TCTGCATTTAATACATGTTACAACAATACAGGTCTGTTTGGCTTTTATGTGCAGTGTGAT GAGCTAGCTGTAGAGCATGCCTTGGGAGAACTCATGTTTGGAGTAACATCCTTAAGTTAC AGTATCACAGATGAAGAAGTCGAGCTAGCCAAAATACAATTAAAGACTCAACTCATTAAT ATGTTTGAATCATCATCTACCCTGGCAGAAGAAGTGTCAAGACAGATTCTCGTGTACGGT CGGAATATCCCACTAGCAGAGTTCCTACTCAGATTAGACAAAATAGATACGGAGGAAGTG AAACGGGTCGCGTGGAAGTATCTACATGATCGGGAGATAGCTGTTGCTGCTATGGGTGCT CTGCACGGCATGCCGCAGTACTACGACCTCAGACAGAAGACCTTCTGGTTGAGGTACTAG
  • Download Fasta

  • Fasta :-

    MLGRTLRRYSSLKSLPKEILNQPITQVTELPNKLKIATVKSTCEVPTIGIWISSGSKYEN KQNNGVAHFLEHMIFKGTKKRNRIQLEKEIENMGAHLNAYTAREQTSYYCRCFKDDVKWC IELLSDILSNSIFDENLIDMEKHVILREMEEVEKSKDEVIFDKLHMTAFRDHPLGYTILG PVENIKNMNRQSIINYINTNYTSDRMVLCAVGDVKHEEVVKLAEQHFSHLKPQSANMGSA SNMGSASNTGSASNIDNVKPYFCGSEIIMRDDDSGPSAHVAVAFEGVDWKSPDSITFMLM QCIIGTYKKSEEGILPGKLSANRTINNICNKMTIGCADYFSAFNTCYNNTGLFGFYVQCD ELAVEHALGELMFGVTSLSYSITDEEVELAKIQLKTQLINMFESSSTLAEEVSRQILVYG RNIPLAEFLLRLDKIDTEEVKRVAWKYLHDREIAVAAMGALHGMPQYYDLRQKTFWLRY

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0735400381 SSLSYSITDE0.997unspPcyM_0735400381 SSLSYSITDE0.997unspPcyM_0735400381 SSLSYSITDE0.997unspPcyM_073540010 SLRRYSSLKS0.993unspPcyM_073540011 SRRYSSLKSL0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India