PcyM_0821100 | signal peptidase complex subunit 2, putative

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  • Fasta :-

    >PcyM_0821100 MPRMEQEDDDNTCSTYLVTNLYSEQELKKVAQDYISEKIRDQKFAENIIYSNIRIVLSLL LIFIGSYCTIFVQYKKEPLLMINLLIAFFIVSGILFFWEYFFFEDIFMILKTNNGGVVKL FFELDIQKSALQLTYKMNKQKHSTSFELRKLFYDDGFLVQNYADAMLKQFISDHGKIFKL CDDKKKA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0821100.fa Sequence name : PcyM_0821100 Sequence length : 187 VALUES OF COMPUTED PARAMETERS Coef20 : 3.330 CoefTot : -0.118 ChDiff : -1 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.353 2.694 0.542 0.926 MesoH : 0.604 1.344 -0.072 0.549 MuHd_075 : 0.528 11.228 3.785 0.514 MuHd_095 : 13.157 5.845 3.580 3.217 MuHd_100 : 13.108 3.302 1.564 2.322 MuHd_105 : 15.544 9.137 0.867 3.158 Hmax_075 : -9.275 3.700 -1.849 0.245 Hmax_095 : -5.500 -2.100 -2.712 0.630 Hmax_100 : -2.200 -0.400 -3.464 0.600 Hmax_105 : -0.200 4.000 -2.933 1.780 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9746 0.0254 DFMC : 0.9703 0.0297
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 187 PcyM_0821100 MPRMEQEDDDNTCSTYLVTNLYSEQELKKVAQDYISEKIRDQKFAENIIYSNIRIVLSLLLIFIGSYCTIFVQYKKEPLL 80 MINLLIAFFIVSGILFFWEYFFFEDIFMILKTNNGGVVKLFFELDIQKSALQLTYKMNKQKHSTSFELRKLFYDDGFLVQ 160 NYADAMLKQFISDHGKIFKLCDDKKKA 240 ................................................................................ 80 ................................................................................ 160 ........................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0821100 3 ----MPR|ME 0.081 . PcyM_0821100 28 YSEQELK|KV 0.069 . PcyM_0821100 29 SEQELKK|VA 0.116 . PcyM_0821100 38 QDYISEK|IR 0.067 . PcyM_0821100 40 YISEKIR|DQ 0.153 . PcyM_0821100 43 EKIRDQK|FA 0.231 . PcyM_0821100 54 IIYSNIR|IV 0.098 . PcyM_0821100 75 TIFVQYK|KE 0.057 . PcyM_0821100 76 IFVQYKK|EP 0.069 . PcyM_0821100 111 DIFMILK|TN 0.056 . PcyM_0821100 119 NNGGVVK|LF 0.063 . PcyM_0821100 128 FELDIQK|SA 0.067 . PcyM_0821100 136 ALQLTYK|MN 0.071 . PcyM_0821100 139 LTYKMNK|QK 0.059 . PcyM_0821100 141 YKMNKQK|HS 0.073 . PcyM_0821100 149 STSFELR|KL 0.096 . PcyM_0821100 150 TSFELRK|LF 0.090 . PcyM_0821100 168 YADAMLK|QF 0.055 . PcyM_0821100 176 FISDHGK|IF 0.066 . PcyM_0821100 179 DHGKIFK|LC 0.067 . PcyM_0821100 184 FKLCDDK|KK 0.055 . PcyM_0821100 185 KLCDDKK|KA 0.112 . PcyM_0821100 186 LCDDKKK|A- 0.110 . ____________________________^_________________

  • Fasta :-

    >PcyM_0821100 ATGCCGAGAATGGAACAAGAAGACGATGATAATACGTGTAGCACATACCTCGTCACCAAC CTGTACAGCGAACAAGAGCTGAAAAAAGTTGCGCAGGACTACATAAGCGAAAAAATAAGG GACCAAAAATTCGCAGAAAATATTATATACTCCAACATACGAATTGTCTTAAGTTTGCTG CTCATATTTATTGGGTCCTACTGCACCATCTTCGTGCAGTACAAAAAGGAACCGTTGCTT ATGATCAATTTGTTGATCGCCTTCTTCATCGTTTCGGGAATTCTCTTTTTTTGGGAGTAT TTCTTTTTCGAAGATATTTTCATGATTTTGAAGACGAACAATGGCGGAGTTGTGAAGCTG TTCTTCGAGCTGGACATCCAGAAGAGCGCCCTCCAATTAACCTACAAGATGAATAAACAA AAGCACAGCACGTCGTTTGAGCTTCGAAAGCTGTTCTACGATGATGGCTTCCTCGTCCAG AATTACGCAGACGCTATGTTGAAGCAGTTCATTTCAGATCACGGCAAGATTTTTAAACTT TGCGATGATAAGAAGAAGGCCTAA
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India