PcyM_0918500 | rhoptry neck protein 4, putative

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No Results
No Results

  • Fasta :-

    >PcyM_0918500 MSRKRVFLLCIFLAISAVVDEAESFRKPDAATNVSFLELTPNGNTEEGQAGDHSQDQGQP SEPIVNTQPLQENVSEAVSHSEESTGGSTEKGNDGGQVEPTPGGGHEETPHGGEHDKGSN GSDASIGAEGKTDGHAEEAAHEQAVGKVTLEKNDAHNESTTTGSNSDKEEQDLYTSAPSD REENSHPVMTNMNNTVGLRGGNASESATPSEDKASEQDVPHEAAAQNGEVSSQEASHAGA QLPVHVDSKEAGEHGDSGKHAEHAEHAEHAEHAEHSEHAEHAEHAEHDEQGDNQIYGTIH PEVEASVLSSLKEKGIHVSSRERIILEIIESAKEGVKGLLKLRTSKETGKILQEALDKLN INQRDLNVNNNSITLEKYDKILSEMFKILTEMSFYKDGHFYETLGLNKSILNQSLKEIKI KMLRTIGVPYTKLPPIVKNKDKEGTCTVNNLIISITSKELAQRMAIMFAKWLAPEEYGSV VDLDKSIELNVLCTGAPILVQQWKYYQNMLGFEVGNEHAFLNLIDELLVIDKRHSNNEQY SKVLKKIKKSKAFNYCTKAMRIAGNISSIPFNHENNKTPSYSIIGSLGNLVKAHMGNYYI AIANRINSYFAYAEKRNKKNSPLKAASVCTLLHLTDMLFNCSDEHQKNILDLNTLKLNIL NMQGKRVLQPLVKMSFLSETQNGTIKEICEPSNHLVDETLSKLLNLLSTSSHELLAAEVE KRGFDEDYIQEEIKNINESDNNVRDKGEDEVENLIFEDL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0918500.fa Sequence name : PcyM_0918500 Sequence length : 759 VALUES OF COMPUTED PARAMETERS Coef20 : 5.108 CoefTot : 1.029 ChDiff : -45 ZoneTo : 19 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.165 2.276 0.269 0.714 MesoH : -0.624 0.329 -0.420 0.257 MuHd_075 : 20.035 5.642 4.738 3.478 MuHd_095 : 6.399 8.242 4.224 2.274 MuHd_100 : 0.993 4.665 2.407 1.814 MuHd_105 : 4.363 5.955 1.039 2.480 Hmax_075 : 16.887 15.750 2.575 5.160 Hmax_095 : 14.525 18.637 4.295 5.031 Hmax_100 : 13.000 17.800 3.802 5.800 Hmax_105 : 15.283 17.150 1.685 5.215 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9541 0.0459 DFMC : 0.9502 0.0498
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 759 PcyM_0918500 MSRKRVFLLCIFLAISAVVDEAESFRKPDAATNVSFLELTPNGNTEEGQAGDHSQDQGQPSEPIVNTQPLQENVSEAVSH 80 SEESTGGSTEKGNDGGQVEPTPGGGHEETPHGGEHDKGSNGSDASIGAEGKTDGHAEEAAHEQAVGKVTLEKNDAHNEST 160 TTGSNSDKEEQDLYTSAPSDREENSHPVMTNMNNTVGLRGGNASESATPSEDKASEQDVPHEAAAQNGEVSSQEASHAGA 240 QLPVHVDSKEAGEHGDSGKHAEHAEHAEHAEHAEHSEHAEHAEHAEHDEQGDNQIYGTIHPEVEASVLSSLKEKGIHVSS 320 RERIILEIIESAKEGVKGLLKLRTSKETGKILQEALDKLNINQRDLNVNNNSITLEKYDKILSEMFKILTEMSFYKDGHF 400 YETLGLNKSILNQSLKEIKIKMLRTIGVPYTKLPPIVKNKDKEGTCTVNNLIISITSKELAQRMAIMFAKWLAPEEYGSV 480 VDLDKSIELNVLCTGAPILVQQWKYYQNMLGFEVGNEHAFLNLIDELLVIDKRHSNNEQYSKVLKKIKKSKAFNYCTKAM 560 RIAGNISSIPFNHENNKTPSYSIIGSLGNLVKAHMGNYYIAIANRINSYFAYAEKRNKKNSPLKAASVCTLLHLTDMLFN 640 CSDEHQKNILDLNTLKLNILNMQGKRVLQPLVKMSFLSETQNGTIKEICEPSNHLVDETLSKLLNLLSTSSHELLAAEVE 720 KRGFDEDYIQEEIKNINESDNNVRDKGEDEVENLIFEDL 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ....................................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0918500 3 ----MSR|KR 0.069 . PcyM_0918500 4 ---MSRK|RV 0.084 . PcyM_0918500 5 --MSRKR|VF 0.115 . PcyM_0918500 26 DEAESFR|KP 0.102 . PcyM_0918500 27 EAESFRK|PD 0.077 . PcyM_0918500 91 TGGSTEK|GN 0.088 . PcyM_0918500 117 HGGEHDK|GS 0.074 . PcyM_0918500 131 SIGAEGK|TD 0.077 . PcyM_0918500 147 HEQAVGK|VT 0.069 . PcyM_0918500 152 GKVTLEK|ND 0.068 . PcyM_0918500 168 TGSNSDK|EE 0.073 . PcyM_0918500 181 TSAPSDR|EE 0.103 . PcyM_0918500 199 NNTVGLR|GG 0.095 . PcyM_0918500 213 ATPSEDK|AS 0.070 . PcyM_0918500 249 PVHVDSK|EA 0.089 . PcyM_0918500 259 EHGDSGK|HA 0.115 . PcyM_0918500 312 SVLSSLK|EK 0.064 . PcyM_0918500 314 LSSLKEK|GI 0.089 . PcyM_0918500 321 GIHVSSR|ER 0.118 . PcyM_0918500 323 HVSSRER|II 0.100 . PcyM_0918500 333 EIIESAK|EG 0.064 . PcyM_0918500 337 SAKEGVK|GL 0.060 . PcyM_0918500 341 GVKGLLK|LR 0.056 . PcyM_0918500 343 KGLLKLR|TS 0.072 . PcyM_0918500 346 LKLRTSK|ET 0.176 . PcyM_0918500 350 TSKETGK|IL 0.074 . PcyM_0918500 358 LQEALDK|LN 0.059 . PcyM_0918500 364 KLNINQR|DL 0.121 . PcyM_0918500 377 NSITLEK|YD 0.061 . PcyM_0918500 380 TLEKYDK|IL 0.076 . PcyM_0918500 387 ILSEMFK|IL 0.071 . PcyM_0918500 396 TEMSFYK|DG 0.083 . PcyM_0918500 408 ETLGLNK|SI 0.061 . PcyM_0918500 416 ILNQSLK|EI 0.068 . PcyM_0918500 419 QSLKEIK|IK 0.056 . PcyM_0918500 421 LKEIKIK|ML 0.083 . PcyM_0918500 424 IKIKMLR|TI 0.088 . PcyM_0918500 432 IGVPYTK|LP 0.055 . PcyM_0918500 438 KLPPIVK|NK 0.064 . PcyM_0918500 440 PPIVKNK|DK 0.086 . PcyM_0918500 442 IVKNKDK|EG 0.064 . PcyM_0918500 458 IISITSK|EL 0.071 . PcyM_0918500 463 SKELAQR|MA 0.100 . PcyM_0918500 470 MAIMFAK|WL 0.089 . PcyM_0918500 485 SVVDLDK|SI 0.078 . PcyM_0918500 504 ILVQQWK|YY 0.080 . PcyM_0918500 532 ELLVIDK|RH 0.058 . PcyM_0918500 533 LLVIDKR|HS 0.144 . PcyM_0918500 542 NNEQYSK|VL 0.064 . PcyM_0918500 545 QYSKVLK|KI 0.071 . PcyM_0918500 546 YSKVLKK|IK 0.104 . PcyM_0918500 548 KVLKKIK|KS 0.060 . PcyM_0918500 549 VLKKIKK|SK 0.128 . PcyM_0918500 551 KKIKKSK|AF 0.080 . PcyM_0918500 558 AFNYCTK|AM 0.074 . PcyM_0918500 561 YCTKAMR|IA 0.102 . PcyM_0918500 577 FNHENNK|TP 0.066 . PcyM_0918500 592 SLGNLVK|AH 0.061 . PcyM_0918500 605 YIAIANR|IN 0.083 . PcyM_0918500 615 YFAYAEK|RN 0.056 . PcyM_0918500 616 FAYAEKR|NK 0.133 . PcyM_0918500 618 YAEKRNK|KN 0.064 . PcyM_0918500 619 AEKRNKK|NS 0.205 . PcyM_0918500 624 KKNSPLK|AA 0.083 . PcyM_0918500 647 CSDEHQK|NI 0.060 . PcyM_0918500 656 LDLNTLK|LN 0.057 . PcyM_0918500 665 ILNMQGK|RV 0.083 . PcyM_0918500 666 LNMQGKR|VL 0.155 . PcyM_0918500 673 VLQPLVK|MS 0.066 . PcyM_0918500 686 TQNGTIK|EI 0.067 . PcyM_0918500 702 VDETLSK|LL 0.056 . PcyM_0918500 721 LAAEVEK|RG 0.066 . PcyM_0918500 722 AAEVEKR|GF 0.192 . PcyM_0918500 734 YIQEEIK|NI 0.068 . PcyM_0918500 744 ESDNNVR|DK 0.112 . PcyM_0918500 746 DNNVRDK|GE 0.097 . ____________________________^_________________

  • Fasta :-

    >PcyM_0918500 ATGTCTCGTAAAAGGGTTTTTCTTTTGTGTATTTTTTTGGCCATTTCTGCAGTTGTTGAC GAAGCCGAGTCGTTCAGGAAGCCGGACGCCGCAACGAATGTCTCCTTCCTGGAGCTAACC CCAAATGGTAACACTGAAGAAGGACAGGCGGGGGACCACTCGCAGGACCAGGGGCAGCCA AGTGAACCCATTGTTAACACCCAGCCGTTGCAGGAAAATGTAAGTGAAGCTGTTAGCCAT TCGGAGGAGTCAACTGGGGGGAGCACTGAGAAGGGAAATGACGGCGGCCAGGTGGAGCCA ACACCGGGGGGAGGCCATGAGGAAACTCCCCACGGAGGAGAGCACGACAAAGGGAGCAAC GGTAGTGACGCAAGCATCGGGGCGGAGGGAAAGACGGACGGCCACGCGGAAGAAGCGGCA CACGAACAGGCCGTCGGGAAAGTGACACTCGAGAAGAACGACGCACACAATGAGAGTACC ACCACGGGCTCTAATTCGGATAAGGAGGAGCAGGACTTGTATACATCCGCCCCTTCAGAT AGAGAAGAAAACAGCCACCCTGTCATGACTAATATGAACAACACGGTAGGTCTGAGAGGG GGAAACGCCTCTGAATCGGCAACCCCAAGTGAAGATAAAGCGTCCGAACAGGATGTGCCC CATGAAGCGGCAGCTCAAAATGGTGAGGTCAGTTCGCAGGAGGCTTCCCACGCGGGAGCA CAGCTTCCTGTGCATGTCGACAGTAAGGAGGCGGGGGAGCATGGCGACAGTGGGAAGCAC GCAGAGCACGCGGAACACGCAGAACACGCAGAACATGCAGAGCACTCAGAGCACGCGGAA CACGCGGAACACGCAGAGCATGATGAACAAGGAGACAACCAAATATACGGGACGATCCAC CCCGAGGTCGAAGCTTCCGTTTTATCCTCGCTGAAGGAAAAGGGCATCCACGTATCCAGC AGAGAAAGAATAATCCTTGAGATCATCGAAAGCGCCAAGGAAGGAGTAAAAGGATTATTA AAGCTACGGACGAGTAAAGAGACAGGAAAGATACTCCAGGAAGCTCTAGATAAGCTGAAC ATAAATCAAAGAGATCTAAATGTTAACAATAATTCTATTACCCTAGAAAAGTATGATAAA ATTCTATCCGAAATGTTTAAGATATTAACAGAAATGTCATTCTATAAGGATGGTCATTTT TACGAAACGTTAGGTTTGAACAAATCTATACTAAATCAATCACTAAAAGAAATAAAAATA AAAATGTTGAGGACTATTGGAGTACCCTACACCAAGTTACCTCCAATTGTTAAGAACAAA GATAAAGAAGGTACATGTACAGTTAATAATCTTATCATTAGTATTACTTCTAAGGAGTTA GCTCAACGAATGGCTATCATGTTCGCAAAATGGCTAGCTCCAGAAGAATACGGATCTGTA GTAGACCTGGATAAAAGCATAGAATTAAATGTACTCTGCACAGGGGCACCTATCCTAGTG CAACAGTGGAAATATTACCAAAATATGTTAGGGTTCGAAGTGGGAAATGAACATGCCTTT TTAAATTTAATCGATGAGTTGTTAGTCATTGACAAAAGACATAGTAACAATGAACAGTAT TCAAAAGTTTTAAAGAAAATAAAAAAATCGAAGGCTTTTAATTATTGTACAAAAGCTATG AGAATTGCAGGTAATATTTCTTCCATTCCATTTAATCATGAAAACAATAAGACGCCAAGT TATTCGATCATCGGTTCGTTAGGTAACCTGGTGAAGGCTCACATGGGGAATTACTACATT GCCATTGCTAACAGAATAAATTCTTATTTTGCATATGCTGAAAAAAGGAACAAAAAAAAC AGTCCTTTAAAAGCTGCTTCCGTCTGTACTCTCCTTCATTTGACCGATATGCTTTTCAAC TGCTCTGATGAGCACCAGAAGAACATTTTGGACCTCAACACTTTGAAGTTGAACATTCTG AACATGCAGGGCAAGCGTGTGCTGCAGCCCCTCGTCAAAATGAGTTTCCTCAGCGAGACG CAGAACGGCACCATCAAGGAGATCTGCGAGCCTAGTAACCACCTAGTGGACGAGACCCTG TCGAAGCTGCTCAACCTGCTCTCAACCAGCTCCCACGAATTGCTCGCAGCTGAGGTGGAA AAGCGCGGCTTCGACGAGGACTACATCCAGGAGGAAATCAAAAATATAAACGAAAGCGAC AACAACGTTCGGGACAAGGGCGAAGACGAAGTGGAAAATCTCATTTTTGAAGATTTGTGA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0918500166 STGSNSDKEE0.997unspPcyM_0918500166 STGSNSDKEE0.997unspPcyM_0918500166 STGSNSDKEE0.997unspPcyM_0918500179 STSAPSDREE0.992unspPcyM_0918500248 SVHVDSKEAG0.992unspPcyM_0918500257 SEHGDSGKHA0.994unspPcyM_0918500310 SSVLSSLKEK0.99unspPcyM_0918500345 SKLRTSKETG0.996unspPcyM_0918500414 SILNQSLKEI0.991unspPcyM_0918500479 SEEYGSVVDL0.993unspPcyM_0918500535 SDKRHSNNEQ0.998unspPcyM_091850079 SSEAVSHSEE0.993unspPcyM_091850081 SAVSHSEEST0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India