PcyM_0919700 | ubiquitin C-terminal hydrolase, family 1, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_0919700OTHER0.9940080.0010690.004923
No Results

  • Fasta :-

    >PcyM_0919700 MCSTSSFYHNRFYTATVSFPLGTYLVGLETNSLIWLILLVKPNRFCAFVYNSDGVVSASR GPLLTSCVRGELESNFEKGIQAAQSTGGSVSVDKLRANAEKRSTRERTGEQARKLKRAHQ VARQVAHQVARRVAHRVARQVAHRVARQVAHRVAHQIAHQITEREDIDVDLSHSNLLSWP PPIRTLHTPPIPRTMQRYSNDSLSEWCLIESNPCIFNDMLSRMGAKNLSVEDVYDMDFFD DYICNRDVVSVENVLSIDEYRSEKEKEENAAVQSTPGETTPHREGPQKKLYNSAVTTEAK YNKLIKNENNIYGIIFLFNIGKSYNRNKFVEHSVPENLFFAKQVIPNACATQAILSIVLN KEVELNEEIKNIKSFSNNFDSSMKGLTLSNCNFLRNIHNSYKPPIYIEKENLHDEKGKSN DSFHFVSYIQYGGSVYMLDGLQEGPVLIGETNGAAGERSWIDLAREHIRKEINDICSGSG KGGGEAGEAGVGGEAGDGVDGGDGRFSILAVVKDKEHIITEFCNIHRIVKKRVNAKLSSL GKQDVDLNDEINEENFSYHNIPTIEELPQDIQELLQIAQKSTVEINFLQSLLQEQMQLKL SWNKELTFKFFNFYPFVMSSLKLMAKHKLLKEAYQKQKQKCRRAAV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0919700.fa Sequence name : PcyM_0919700 Sequence length : 646 VALUES OF COMPUTED PARAMETERS Coef20 : 4.403 CoefTot : -0.927 ChDiff : 1 ZoneTo : 70 KR : 5 DE : 2 CleavSite : 46 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.600 1.712 0.186 0.671 MesoH : -0.082 0.461 -0.204 0.248 MuHd_075 : 18.149 15.187 5.991 4.304 MuHd_095 : 20.001 18.104 5.939 3.899 MuHd_100 : 20.896 13.473 5.381 4.239 MuHd_105 : 30.252 20.036 7.183 6.186 Hmax_075 : 11.433 16.217 3.044 5.600 Hmax_095 : 12.200 17.500 3.793 5.900 Hmax_100 : 15.900 16.600 2.874 6.020 Hmax_105 : 16.400 16.600 1.666 5.340 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8770 0.1230 DFMC : 0.7684 0.2316
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 646 PcyM_0919700 MCSTSSFYHNRFYTATVSFPLGTYLVGLETNSLIWLILLVKPNRFCAFVYNSDGVVSASRGPLLTSCVRGELESNFEKGI 80 QAAQSTGGSVSVDKLRANAEKRSTRERTGEQARKLKRAHQVARQVAHQVARRVAHRVARQVAHRVARQVAHRVAHQIAHQ 160 ITEREDIDVDLSHSNLLSWPPPIRTLHTPPIPRTMQRYSNDSLSEWCLIESNPCIFNDMLSRMGAKNLSVEDVYDMDFFD 240 DYICNRDVVSVENVLSIDEYRSEKEKEENAAVQSTPGETTPHREGPQKKLYNSAVTTEAKYNKLIKNENNIYGIIFLFNI 320 GKSYNRNKFVEHSVPENLFFAKQVIPNACATQAILSIVLNKEVELNEEIKNIKSFSNNFDSSMKGLTLSNCNFLRNIHNS 400 YKPPIYIEKENLHDEKGKSNDSFHFVSYIQYGGSVYMLDGLQEGPVLIGETNGAAGERSWIDLAREHIRKEINDICSGSG 480 KGGGEAGEAGVGGEAGDGVDGGDGRFSILAVVKDKEHIITEFCNIHRIVKKRVNAKLSSLGKQDVDLNDEINEENFSYHN 560 IPTIEELPQDIQELLQIAQKSTVEINFLQSLLQEQMQLKLSWNKELTFKFFNFYPFVMSSLKLMAKHKLLKEAYQKQKQK 640 CRRAAV 720 ................................................................................ 80 ..................................................................P............. 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ...... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PcyM_0919700 11 SSFYHNR|FY 0.129 . PcyM_0919700 41 WLILLVK|PN 0.056 . PcyM_0919700 44 LLVKPNR|FC 0.087 . PcyM_0919700 60 GVVSASR|GP 0.060 . PcyM_0919700 69 LLTSCVR|GE 0.068 . PcyM_0919700 78 LESNFEK|GI 0.093 . PcyM_0919700 94 GSVSVDK|LR 0.064 . PcyM_0919700 96 VSVDKLR|AN 0.103 . PcyM_0919700 101 LRANAEK|RS 0.074 . PcyM_0919700 102 RANAEKR|ST 0.348 . PcyM_0919700 105 AEKRSTR|ER 0.247 . PcyM_0919700 107 KRSTRER|TG 0.154 . PcyM_0919700 113 RTGEQAR|KL 0.097 . PcyM_0919700 114 TGEQARK|LK 0.083 . PcyM_0919700 116 EQARKLK|RA 0.239 . PcyM_0919700 117 QARKLKR|AH 0.178 . PcyM_0919700 123 RAHQVAR|QV 0.232 . PcyM_0919700 131 VAHQVAR|RV 0.121 . PcyM_0919700 132 AHQVARR|VA 0.207 . PcyM_0919700 136 ARRVAHR|VA 0.162 . PcyM_0919700 139 VAHRVAR|QV 0.487 . PcyM_0919700 144 ARQVAHR|VA 0.154 . PcyM_0919700 147 VAHRVAR|QV 0.530 *ProP* PcyM_0919700 152 ARQVAHR|VA 0.186 . PcyM_0919700 164 AHQITER|ED 0.090 . PcyM_0919700 184 SWPPPIR|TL 0.078 . PcyM_0919700 193 HTPPIPR|TM 0.071 . PcyM_0919700 197 IPRTMQR|YS 0.157 . PcyM_0919700 222 FNDMLSR|MG 0.081 . PcyM_0919700 226 LSRMGAK|NL 0.072 . PcyM_0919700 246 DDYICNR|DV 0.144 . PcyM_0919700 261 LSIDEYR|SE 0.139 . PcyM_0919700 264 DEYRSEK|EK 0.112 . PcyM_0919700 266 YRSEKEK|EE 0.079 . PcyM_0919700 283 GETTPHR|EG 0.072 . PcyM_0919700 288 HREGPQK|KL 0.075 . PcyM_0919700 289 REGPQKK|LY 0.144 . PcyM_0919700 300 AVTTEAK|YN 0.060 . PcyM_0919700 303 TEAKYNK|LI 0.068 . PcyM_0919700 306 KYNKLIK|NE 0.067 . PcyM_0919700 322 FLFNIGK|SY 0.075 . PcyM_0919700 326 IGKSYNR|NK 0.074 . PcyM_0919700 328 KSYNRNK|FV 0.133 . PcyM_0919700 342 ENLFFAK|QV 0.086 . PcyM_0919700 361 LSIVLNK|EV 0.090 . PcyM_0919700 370 ELNEEIK|NI 0.064 . PcyM_0919700 373 EEIKNIK|SF 0.085 . PcyM_0919700 384 NFDSSMK|GL 0.062 . PcyM_0919700 395 SNCNFLR|NI 0.116 . PcyM_0919700 402 NIHNSYK|PP 0.070 . PcyM_0919700 409 PPIYIEK|EN 0.064 . PcyM_0919700 416 ENLHDEK|GK 0.067 . PcyM_0919700 418 LHDEKGK|SN 0.093 . PcyM_0919700 458 NGAAGER|SW 0.138 . PcyM_0919700 465 SWIDLAR|EH 0.107 . PcyM_0919700 469 LAREHIR|KE 0.088 . PcyM_0919700 470 AREHIRK|EI 0.108 . PcyM_0919700 481 ICSGSGK|GG 0.097 . PcyM_0919700 505 VDGGDGR|FS 0.082 . PcyM_0919700 513 SILAVVK|DK 0.087 . PcyM_0919700 515 LAVVKDK|EH 0.066 . PcyM_0919700 527 EFCNIHR|IV 0.103 . PcyM_0919700 530 NIHRIVK|KR 0.089 . PcyM_0919700 531 IHRIVKK|RV 0.193 . PcyM_0919700 532 HRIVKKR|VN 0.219 . PcyM_0919700 536 KKRVNAK|LS 0.077 . PcyM_0919700 542 KLSSLGK|QD 0.066 . PcyM_0919700 580 LLQIAQK|ST 0.078 . PcyM_0919700 599 QEQMQLK|LS 0.069 . PcyM_0919700 604 LKLSWNK|EL 0.062 . PcyM_0919700 609 NKELTFK|FF 0.067 . PcyM_0919700 622 FVMSSLK|LM 0.053 . PcyM_0919700 626 SLKLMAK|HK 0.064 . PcyM_0919700 628 KLMAKHK|LL 0.069 . PcyM_0919700 631 AKHKLLK|EA 0.087 . PcyM_0919700 636 LKEAYQK|QK 0.064 . PcyM_0919700 638 EAYQKQK|QK 0.063 . PcyM_0919700 640 YQKQKQK|CR 0.070 . PcyM_0919700 642 KQKQKCR|RA 0.106 . PcyM_0919700 643 QKQKCRR|AA 0.231 . ____________________________^_________________

  • Fasta :-

    >PcyM_0919700 ATGTGTAGTACCTCTTCATTTTACCATAATCGTTTTTACACTGCAACAGTTTCGTTTCCC CTGGGAACTTACTTAGTGGGATTAGAAACGAATTCCCTAATTTGGCTCATTTTGCTCGTT AAGCCAAATCGCTTCTGTGCGTTTGTGTACAACTCGGACGGCGTCGTGAGCGCATCGCGT GGCCCCCTGTTGACGAGCTGCGTTAGAGGAGAGTTAGAAAGCAACTTTGAGAAAGGCATC CAAGCGGCGCAGTCAACGGGAGGTAGTGTGTCTGTCGACAAGTTGCGCGCCAACGCGGAA AAAAGGAGCACACGGGAGAGAACAGGGGAACAAGCGAGAAAACTCAAGAGAGCACACCAG GTAGCACGCCAGGTAGCACACCAGGTAGCACGCAGGGTAGCACACCGGGTAGCACGCCAG GTAGCACACCGGGTAGCACGCCAGGTAGCACACCGGGTAGCACACCAAATAGCACACCAA ATAACAGAACGCGAAGACATTGACGTAGATCTTAGCCACTCGAACCTGCTCTCCTGGCCT CCCCCCATTAGAACTCTTCACACGCCACCCATCCCCCGAACAATGCAGAGATACAGCAAC GACAGCCTGAGTGAATGGTGCCTAATCGAGAGCAATCCGTGCATCTTTAATGACATGCTA AGTCGGATGGGGGCGAAGAACCTCTCCGTGGAGGACGTGTATGATATGGATTTTTTCGAT GACTACATATGTAACAGGGATGTGGTCAGTGTAGAGAATGTCCTCAGCATCGATGAGTAT CGGAGTGAGAAGGAGAAGGAGGAGAATGCCGCTGTTCAGAGTACCCCGGGGGAGACAACC CCGCACAGGGAAGGCCCACAGAAGAAGTTGTACAACAGCGCCGTGACGACAGAAGCCAAA TACAACAAGCTAATAAAAAACGAAAACAACATTTATGGAATTATTTTCCTGTTTAACATC GGGAAAAGCTACAACAGGAATAAGTTCGTGGAGCACAGTGTGCCGGAAAATCTTTTTTTT GCAAAGCAGGTGATCCCAAACGCATGTGCTACGCAAGCTATCCTATCCATTGTCCTTAAT AAAGAGGTAGAACTGAACGAAGAAATAAAAAACATCAAATCGTTTAGTAACAACTTTGAT AGCTCCATGAAGGGGCTCACTCTTTCTAACTGTAATTTTCTTCGAAATATCCACAACTCG TATAAGCCTCCCATATATATAGAAAAGGAGAACCTACATGATGAGAAGGGAAAGAGCAAC GACTCGTTCCACTTCGTTTCGTATATACAATATGGTGGAAGTGTGTACATGCTGGATGGG CTACAGGAGGGGCCCGTGTTGATTGGAGAGACCAATGGCGCAGCGGGGGAGCGCAGTTGG ATCGACCTCGCCAGGGAACACATAAGGAAGGAAATCAACGACATATGCAGCGGAAGCGGT AAGGGAGGAGGAGAAGCAGGAGAAGCAGGAGTCGGGGGAGAAGCGGGAGACGGAGTAGAC GGGGGAGACGGCCGATTCAGCATCCTAGCCGTCGTGAAAGACAAAGAACACATTATCACC GAATTCTGTAACATACATAGAATTGTAAAAAAGAGAGTTAACGCCAAGTTAAGTAGCCTG GGAAAGCAGGACGTAGATCTAAACGATGAAATAAATGAAGAAAATTTTAGCTACCATAAT ATTCCTACCATAGAGGAGCTCCCCCAAGACATCCAAGAACTCCTTCAAATTGCTCAAAAA TCAACAGTAGAAATTAATTTCCTTCAGTCCCTTCTGCAGGAACAGATGCAGCTGAAGCTC AGCTGGAACAAAGAACTCACTTTTAAATTTTTTAATTTCTATCCGTTTGTTATGTCGTCC TTAAAGCTGATGGCAAAGCATAAGCTTTTAAAGGAGGCTTACCAGAAGCAGAAGCAGAAG TGCAGGCGGGCCGCTGTGTAG
  • Download Fasta

  • Fasta :-

    MCSTSSFYHNRFYTATVSFPLGTYLVGLETNSLIWLILLVKPNRFCAFVYNSDGVVSASR GPLLTSCVRGELESNFEKGIQAAQSTGGSVSVDKLRANAEKRSTRERTGEQARKLKRAHQ VARQVAHQVARRVAHRVARQVAHRVARQVAHRVAHQIAHQITEREDIDVDLSHSNLLSWP PPIRTLHTPPIPRTMQRYSNDSLSEWCLIESNPCIFNDMLSRMGAKNLSVEDVYDMDFFD DYICNRDVVSVENVLSIDEYRSEKEKEENAAVQSTPGETTPHREGPQKKLYNSAVTTEAK YNKLIKNENNIYGIIFLFNIGKSYNRNKFVEHSVPENLFFAKQVIPNACATQAILSIVLN KEVELNEEIKNIKSFSNNFDSSMKGLTLSNCNFLRNIHNSYKPPIYIEKENLHDEKGKSN DSFHFVSYIQYGGSVYMLDGLQEGPVLIGETNGAAGERSWIDLAREHIRKEINDICSGSG KGGGEAGEAGVGGEAGDGVDGGDGRFSILAVVKDKEHIITEFCNIHRIVKKRVNAKLSSL GKQDVDLNDEINEENFSYHNIPTIEELPQDIQELLQIAQKSTVEINFLQSLLQEQMQLKL SWNKELTFKFFNFYPFVMSSLKLMAKHKLLKEAYQKQKQKCRRAAV

  • title: catalytic site
  • coordinates: Q343,C349,H424,D439
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0919700262 SDEYRSEKEK0.998unspPcyM_0919700262 SDEYRSEKEK0.998unspPcyM_0919700262 SDEYRSEKEK0.998unspPcyM_0919700202 SYSNDSLSEW0.995unspPcyM_0919700229 SAKNLSVEDV0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India