PcyM_0938200 | apical membrane antigen 1, putative

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:  GO:0009405      

  • Computed_GO_Processes:  pathogenesis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

No Results
No Results

  • Fasta :-

    >PcyM_0938200 MNKIYYILFLSAQCLVHIGKCGRSQKPSRMTRSANNVLLEKGPIVERSTRLSNPWKAFMD KYDVERTHNSGIRVDLGEDAEVENSKYRIPGGKCPVFGKGIVIENSEVSFLRPVATGDQK LKDGGFAFPNADDHISPMTIDNLKERYKDNVEMMKLNDIALCRTHAASFVMAGDQNSSYR HPAVYDEKEKTCHMLYLSAQENVGPRYCNRDAENRDAMFCFKPDKTVDFENLVYLSKNVR NDWEEKCPRKNLGNAKFGLWVDGNCEEIPYVKEVEAEDLRKCNRIVFEASASDQPTQYEE ELTDYQKIQEGFRQNNRSMIKSAFLPVGAFNSDKFKSKGRGFNWANFDSVNNKCYIFNSK PTCLINDKNFIATTALSHPQEIDNEFPCSIYKDEIEKEIRKQSRNMQLYNVDRERIVLPR IFISNDKDSIKCPCEPEHISNSTCDFYVCNCVEKRAEIKENNEVVIKEEFKEDYQNGEGK SNNKMLLIIIGVTGGVCVVALASMFYFRKKEHNDKYDKMDQAEGYGKPATRKDEMLDPEA SFWGEDKRASHTTPVLMEKPYY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0938200.fa Sequence name : PcyM_0938200 Sequence length : 562 VALUES OF COMPUTED PARAMETERS Coef20 : 3.909 CoefTot : -0.612 ChDiff : -5 ZoneTo : 39 KR : 6 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.312 2.706 0.612 0.873 MesoH : -1.238 -0.047 -0.576 0.079 MuHd_075 : 18.451 11.489 7.740 3.574 MuHd_095 : 19.253 19.466 8.212 4.620 MuHd_100 : 27.095 23.226 10.384 6.109 MuHd_105 : 40.980 21.805 11.073 8.214 Hmax_075 : 16.333 19.600 4.572 6.130 Hmax_095 : 14.350 21.800 6.218 0.053 Hmax_100 : 15.400 22.800 6.218 6.700 Hmax_105 : 12.000 9.200 7.068 3.350 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7743 0.2257 DFMC : 0.8059 0.1941
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 562 PcyM_0938200 MNKIYYILFLSAQCLVHIGKCGRSQKPSRMTRSANNVLLEKGPIVERSTRLSNPWKAFMDKYDVERTHNSGIRVDLGEDA 80 EVENSKYRIPGGKCPVFGKGIVIENSEVSFLRPVATGDQKLKDGGFAFPNADDHISPMTIDNLKERYKDNVEMMKLNDIA 160 LCRTHAASFVMAGDQNSSYRHPAVYDEKEKTCHMLYLSAQENVGPRYCNRDAENRDAMFCFKPDKTVDFENLVYLSKNVR 240 NDWEEKCPRKNLGNAKFGLWVDGNCEEIPYVKEVEAEDLRKCNRIVFEASASDQPTQYEEELTDYQKIQEGFRQNNRSMI 320 KSAFLPVGAFNSDKFKSKGRGFNWANFDSVNNKCYIFNSKPTCLINDKNFIATTALSHPQEIDNEFPCSIYKDEIEKEIR 400 KQSRNMQLYNVDRERIVLPRIFISNDKDSIKCPCEPEHISNSTCDFYVCNCVEKRAEIKENNEVVIKEEFKEDYQNGEGK 480 SNNKMLLIIIGVTGGVCVVALASMFYFRKKEHNDKYDKMDQAEGYGKPATRKDEMLDPEASFWGEDKRASHTTPVLMEKP 560 YY 640 ...............................P................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PcyM_0938200 3 ----MNK|IY 0.061 . PcyM_0938200 20 CLVHIGK|CG 0.063 . PcyM_0938200 23 HIGKCGR|SQ 0.162 . PcyM_0938200 26 KCGRSQK|PS 0.138 . PcyM_0938200 29 RSQKPSR|MT 0.119 . PcyM_0938200 32 KPSRMTR|SA 0.708 *ProP* PcyM_0938200 41 NNVLLEK|GP 0.061 . PcyM_0938200 47 KGPIVER|ST 0.111 . PcyM_0938200 50 IVERSTR|LS 0.182 . PcyM_0938200 56 RLSNPWK|AF 0.098 . PcyM_0938200 61 WKAFMDK|YD 0.067 . PcyM_0938200 66 DKYDVER|TH 0.084 . PcyM_0938200 73 THNSGIR|VD 0.082 . PcyM_0938200 86 AEVENSK|YR 0.073 . PcyM_0938200 88 VENSKYR|IP 0.121 . PcyM_0938200 93 YRIPGGK|CP 0.061 . PcyM_0938200 99 KCPVFGK|GI 0.072 . PcyM_0938200 112 SEVSFLR|PV 0.122 . PcyM_0938200 120 VATGDQK|LK 0.059 . PcyM_0938200 122 TGDQKLK|DG 0.090 . PcyM_0938200 144 MTIDNLK|ER 0.056 . PcyM_0938200 146 IDNLKER|YK 0.189 . PcyM_0938200 148 NLKERYK|DN 0.068 . PcyM_0938200 155 DNVEMMK|LN 0.068 . PcyM_0938200 163 NDIALCR|TH 0.085 . PcyM_0938200 180 DQNSSYR|HP 0.092 . PcyM_0938200 188 PAVYDEK|EK 0.058 . PcyM_0938200 190 VYDEKEK|TC 0.057 . PcyM_0938200 206 QENVGPR|YC 0.086 . PcyM_0938200 210 GPRYCNR|DA 0.191 . PcyM_0938200 215 NRDAENR|DA 0.118 . PcyM_0938200 222 DAMFCFK|PD 0.063 . PcyM_0938200 225 FCFKPDK|TV 0.072 . PcyM_0938200 237 NLVYLSK|NV 0.063 . PcyM_0938200 240 YLSKNVR|ND 0.081 . PcyM_0938200 246 RNDWEEK|CP 0.063 . PcyM_0938200 249 WEEKCPR|KN 0.074 . PcyM_0938200 250 EEKCPRK|NL 0.100 . PcyM_0938200 256 KNLGNAK|FG 0.066 . PcyM_0938200 272 EEIPYVK|EV 0.070 . PcyM_0938200 280 VEAEDLR|KC 0.071 . PcyM_0938200 281 EAEDLRK|CN 0.084 . PcyM_0938200 284 DLRKCNR|IV 0.117 . PcyM_0938200 307 ELTDYQK|IQ 0.058 . PcyM_0938200 313 KIQEGFR|QN 0.080 . PcyM_0938200 317 GFRQNNR|SM 0.123 . PcyM_0938200 321 NNRSMIK|SA 0.084 . PcyM_0938200 334 GAFNSDK|FK 0.089 . PcyM_0938200 336 FNSDKFK|SK 0.168 . PcyM_0938200 338 SDKFKSK|GR 0.080 . PcyM_0938200 340 KFKSKGR|GF 0.117 . PcyM_0938200 353 FDSVNNK|CY 0.066 . PcyM_0938200 360 CYIFNSK|PT 0.061 . PcyM_0938200 368 TCLINDK|NF 0.057 . PcyM_0938200 392 FPCSIYK|DE 0.068 . PcyM_0938200 397 YKDEIEK|EI 0.063 . PcyM_0938200 400 EIEKEIR|KQ 0.078 . PcyM_0938200 401 IEKEIRK|QS 0.072 . PcyM_0938200 404 EIRKQSR|NM 0.089 . PcyM_0938200 413 QLYNVDR|ER 0.081 . PcyM_0938200 415 YNVDRER|IV 0.107 . PcyM_0938200 420 ERIVLPR|IF 0.094 . PcyM_0938200 427 IFISNDK|DS 0.063 . PcyM_0938200 431 NDKDSIK|CP 0.066 . PcyM_0938200 454 VCNCVEK|RA 0.086 . PcyM_0938200 455 CNCVEKR|AE 0.184 . PcyM_0938200 459 EKRAEIK|EN 0.067 . PcyM_0938200 467 NNEVVIK|EE 0.063 . PcyM_0938200 471 VIKEEFK|ED 0.067 . PcyM_0938200 480 YQNGEGK|SN 0.104 . PcyM_0938200 484 EGKSNNK|ML 0.062 . PcyM_0938200 508 ASMFYFR|KK 0.097 . PcyM_0938200 509 SMFYFRK|KE 0.076 . PcyM_0938200 510 MFYFRKK|EH 0.114 . PcyM_0938200 515 KKEHNDK|YD 0.064 . PcyM_0938200 518 HNDKYDK|MD 0.063 . PcyM_0938200 527 QAEGYGK|PA 0.070 . PcyM_0938200 531 YGKPATR|KD 0.083 . PcyM_0938200 532 GKPATRK|DE 0.082 . PcyM_0938200 547 SFWGEDK|RA 0.071 . PcyM_0938200 548 FWGEDKR|AS 0.193 . PcyM_0938200 559 TPVLMEK|PY 0.069 . ____________________________^_________________

  • Fasta :-

    >PcyM_0938200 ATGAATAAAATATACTACATACTGTTTTTAAGCGCCCAGTGCCTTGTGCACATCGGTAAG TGTGGGCGAAGCCAGAAGCCGAGCAGAATGACCCGCAGCGCTAACAACGTTTTGTTGGAA AAGGGGCCTATCGTTGAGAGAAGTACACGATTGAGTAACCCATGGAAAGCGTTCATGGAC AAGTACGATGTAGAAAGAACACACAATTCTGGGATTCGAGTTGATTTAGGGGAAGATGCA GAAGTGGAAAATTCCAAGTATAGAATACCAGGTGGAAAATGTCCAGTTTTTGGAAAGGGT ATTGTTATAGAGAATTCTGAGGTAAGCTTCTTAAGACCCGTAGCTACAGGAGATCAGAAA TTGAAGGATGGAGGTTTCGCCTTCCCCAATGCAGATGACCATATTTCCCCTATGACAATA GATAATCTTAAAGAAAGATATAAAGATAATGTAGAGATGATGAAGCTAAACGATATAGCT TTATGTAGAACCCATGCAGCTAGCTTTGTCATGGCAGGAGATCAAAATTCTTCTTATAGA CACCCAGCTGTTTATGACGAAAAGGAAAAAACATGTCACATGTTGTATTTATCAGCTCAA GAAAATGTAGGTCCAAGATACTGTAATCGGGATGCAGAAAATAGAGATGCCATGTTTTGC TTCAAGCCAGATAAAACTGTAGATTTTGAAAATCTGGTGTATTTAAGCAAAAATGTGCGT AATGATTGGGAAGAAAAATGCCCCCGTAAAAATTTAGGAAACGCTAAATTTGGATTATGG GTAGATGGGAACTGTGAAGAAATCCCATACGTTAAAGAAGTGGAAGCAGAAGATCTACGC AAATGCAACAGAATCGTTTTCGAAGCTAGTGCTTCAGATCAACCAACTCAGTACGAAGAA GAACTAACGGATTATCAAAAAATACAAGAAGGATTTAGACAGAACAATCGGAGCATGATT AAAAGTGCCTTTCTTCCAGTGGGCGCATTCAACTCGGATAAATTTAAAAGTAAAGGAAGA GGATTTAACTGGGCCAATTTCGATTCTGTAAATAATAAGTGTTATATTTTTAATTCCAAA CCCACGTGCCTCATTAATGACAAAAATTTTATTGCAACAACGGCGTTATCCCACCCCCAA GAAATAGACAATGAGTTTCCATGCAGCATATACAAAGACGAAATAGAAAAGGAAATTCGG AAACAATCGAGGAACATGCAACTGTATAATGTGGATAGGGAAAGGATTGTCCTGCCAAGG ATATTTATCTCCAACGATAAGGATAGTATCAAATGTCCATGTGAACCTGAACACATTTCC AACAGTACTTGCGACTTTTACGTTTGTAACTGTGTAGAGAAAAGGGCAGAAATTAAGGAA AATAACGAAGTTGTCATAAAGGAAGAATTTAAAGAGGATTACCAAAATGGGGAGGGAAAA TCCAACAATAAGATGCTACTAATTATTATCGGAGTAACTGGAGGTGTTTGCGTGGTCGCA CTGGCCTCCATGTTTTACTTCAGGAAGAAAGAGCACAATGATAAGTATGACAAAATGGAT CAGGCAGAAGGGTACGGAAAGCCCGCCACGAGGAAGGACGAGATGCTCGACCCCGAGGCG TCCTTCTGGGGCGAGGATAAGCGGGCCTCCCACACCACGCCTGTGCTTATGGAGAAGCCT TACTACTGA
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  • Fasta :-

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0938200429 SNDKDSIKCP0.996unspPcyM_0938200429 SNDKDSIKCP0.996unspPcyM_0938200429 SNDKDSIKCP0.996unspPcyM_0938200550 SDKRASHTTP0.991unspPcyM_093820024 SKCGRSQKPS0.992unspPcyM_0938200290 SVFEASASDQ0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India