PcyM_0947800 | alpha/beta hydrolase, putative

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_IDPredictionOTHERSPmTPCS_Position
PcyM_0947800SP0.0168710.9805190.002610CS pos: 21-22. CKC-FF. Pr: 0.6202
No Results

  • Fasta :-

    >PcyM_0947800 MRSPLARTICALLYAVSLCKCFFPINGGEPIGSHRQGGHPSEGEKKMRSVLRKGSITHLC NKIRCVNYVQWYEGRRRISSATWNSGKRSPVSSRLFGSFETKIPGSQADLVVDGIAVSIS DNTNIFKEETSSTPIVLIHGCYGSKNNFRVFSKSLKSSKIVTLDLRNHGNSKHTDSMKYE EMESDIKKVLDELHIRKCCLVGFSLGGKVSMYCALKNQSLFSHLVVMDILPFDYNEKKCH VKLPYNISYMTKILFNIKTKMRPRSKAEFVAYLRAEVPDISSSFEQFICTSLREEVAKVG KAAKEANEAKAEKAAKEADAAGNAAGVMDKPMGGTDFVGAADAIGCSEGPAAKQQKNLVW KINVDTIWRELPHILSFPLNHQERKYHNPCSFIIGKKSDLVYTMPQYQTIIKNYFPSSEN FILPDATHTVYIDNAKECADIVNRTLRL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0947800.fa Sequence name : PcyM_0947800 Sequence length : 448 VALUES OF COMPUTED PARAMETERS Coef20 : 4.936 CoefTot : -0.005 ChDiff : 18 ZoneTo : 28 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.453 1.982 0.434 0.612 MesoH : -0.740 0.267 -0.427 0.156 MuHd_075 : 26.774 13.376 8.389 6.469 MuHd_095 : 20.914 15.614 4.230 5.387 MuHd_100 : 16.301 16.413 3.953 4.831 MuHd_105 : 28.197 22.852 7.347 7.649 Hmax_075 : 14.233 18.550 5.935 5.370 Hmax_095 : 16.887 17.938 5.514 5.696 Hmax_100 : 17.600 19.900 4.928 5.560 Hmax_105 : 17.700 24.400 5.846 6.710 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2118 0.7882 DFMC : 0.4464 0.5536 This protein is probably imported in mitochondria. f(Ser) = 0.0714 f(Arg) = 0.0714 CMi = 0.42017 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 448 PcyM_0947800 MRSPLARTICALLYAVSLCKCFFPINGGEPIGSHRQGGHPSEGEKKMRSVLRKGSITHLCNKIRCVNYVQWYEGRRRISS 80 ATWNSGKRSPVSSRLFGSFETKIPGSQADLVVDGIAVSISDNTNIFKEETSSTPIVLIHGCYGSKNNFRVFSKSLKSSKI 160 VTLDLRNHGNSKHTDSMKYEEMESDIKKVLDELHIRKCCLVGFSLGGKVSMYCALKNQSLFSHLVVMDILPFDYNEKKCH 240 VKLPYNISYMTKILFNIKTKMRPRSKAEFVAYLRAEVPDISSSFEQFICTSLREEVAKVGKAAKEANEAKAEKAAKEADA 320 AGNAAGVMDKPMGGTDFVGAADAIGCSEGPAAKQQKNLVWKINVDTIWRELPHILSFPLNHQERKYHNPCSFIIGKKSDL 400 VYTMPQYQTIIKNYFPSSENFILPDATHTVYIDNAKECADIVNRTLRL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0947800 2 -----MR|SP 0.100 . PcyM_0947800 7 MRSPLAR|TI 0.197 . PcyM_0947800 20 YAVSLCK|CF 0.065 . PcyM_0947800 35 EPIGSHR|QG 0.093 . PcyM_0947800 45 HPSEGEK|KM 0.069 . PcyM_0947800 46 PSEGEKK|MR 0.108 . PcyM_0947800 48 EGEKKMR|SV 0.247 . PcyM_0947800 52 KMRSVLR|KG 0.095 . PcyM_0947800 53 MRSVLRK|GS 0.203 . PcyM_0947800 62 ITHLCNK|IR 0.059 . PcyM_0947800 64 HLCNKIR|CV 0.171 . PcyM_0947800 75 VQWYEGR|RR 0.075 . PcyM_0947800 76 QWYEGRR|RI 0.123 . PcyM_0947800 77 WYEGRRR|IS 0.129 . PcyM_0947800 87 ATWNSGK|RS 0.059 . PcyM_0947800 88 TWNSGKR|SP 0.246 . PcyM_0947800 94 RSPVSSR|LF 0.109 . PcyM_0947800 102 FGSFETK|IP 0.073 . PcyM_0947800 127 DNTNIFK|EE 0.060 . PcyM_0947800 145 HGCYGSK|NN 0.062 . PcyM_0947800 149 GSKNNFR|VF 0.142 . PcyM_0947800 153 NFRVFSK|SL 0.082 . PcyM_0947800 156 VFSKSLK|SS 0.090 . PcyM_0947800 159 KSLKSSK|IV 0.076 . PcyM_0947800 166 IVTLDLR|NH 0.084 . PcyM_0947800 172 RNHGNSK|HT 0.071 . PcyM_0947800 178 KHTDSMK|YE 0.070 . PcyM_0947800 187 EMESDIK|KV 0.065 . PcyM_0947800 188 MESDIKK|VL 0.112 . PcyM_0947800 196 LDELHIR|KC 0.085 . PcyM_0947800 197 DELHIRK|CC 0.069 . PcyM_0947800 208 GFSLGGK|VS 0.056 . PcyM_0947800 216 SMYCALK|NQ 0.056 . PcyM_0947800 237 PFDYNEK|KC 0.059 . PcyM_0947800 238 FDYNEKK|CH 0.082 . PcyM_0947800 242 EKKCHVK|LP 0.064 . PcyM_0947800 252 NISYMTK|IL 0.076 . PcyM_0947800 258 KILFNIK|TK 0.053 . PcyM_0947800 260 LFNIKTK|MR 0.065 . PcyM_0947800 262 NIKTKMR|PR 0.119 . PcyM_0947800 264 KTKMRPR|SK 0.121 . PcyM_0947800 266 KMRPRSK|AE 0.063 . PcyM_0947800 274 EFVAYLR|AE 0.065 . PcyM_0947800 293 FICTSLR|EE 0.074 . PcyM_0947800 298 LREEVAK|VG 0.073 . PcyM_0947800 301 EVAKVGK|AA 0.078 . PcyM_0947800 304 KVGKAAK|EA 0.074 . PcyM_0947800 310 KEANEAK|AE 0.072 . PcyM_0947800 313 NEAKAEK|AA 0.074 . PcyM_0947800 316 KAEKAAK|EA 0.100 . PcyM_0947800 330 AAGVMDK|PM 0.068 . PcyM_0947800 353 SEGPAAK|QQ 0.058 . PcyM_0947800 356 PAAKQQK|NL 0.075 . PcyM_0947800 361 QKNLVWK|IN 0.071 . PcyM_0947800 369 NVDTIWR|EL 0.072 . PcyM_0947800 384 PLNHQER|KY 0.091 . PcyM_0947800 385 LNHQERK|YH 0.093 . PcyM_0947800 396 CSFIIGK|KS 0.065 . PcyM_0947800 397 SFIIGKK|SD 0.105 . PcyM_0947800 412 QYQTIIK|NY 0.062 . PcyM_0947800 436 VYIDNAK|EC 0.062 . PcyM_0947800 444 CADIVNR|TL 0.074 . PcyM_0947800 447 IVNRTLR|L- 0.253 . ____________________________^_________________

  • Fasta :-

    >PcyM_0947800 ATGCGCTCACCACTTGCGCGAACCATTTGTGCGCTCTTGTACGCAGTGAGCCTTTGCAAG TGCTTCTTCCCCATCAACGGAGGGGAACCCATAGGATCCCACAGACAAGGTGGACACCCA AGTGAAGGAGAAAAGAAAATGAGAAGTGTTCTGAGGAAGGGAAGCATTACACATCTGTGT AACAAAATAAGGTGTGTAAATTATGTGCAATGGTATGAAGGTAGAAGGAGAATAAGTAGT GCCACCTGGAATAGTGGGAAAAGGAGTCCAGTGAGTAGCCGCCTCTTCGGCTCGTTTGAA ACAAAAATACCAGGTAGTCAAGCAGATCTCGTAGTCGACGGTATAGCAGTCAGCATTTCT GATAATACAAATATATTCAAGGAAGAGACCAGTAGCACCCCGATAGTGTTAATTCACGGG TGCTATGGAAGCAAAAATAACTTTCGTGTTTTTAGCAAAAGCTTAAAAAGCAGTAAAATT GTAACCCTCGATTTACGGAACCATGGGAACTCAAAACATACAGATAGTATGAAATATGAA GAAATGGAAAGTGACATAAAAAAAGTTTTGGATGAGCTTCACATTAGGAAATGCTGTCTA GTTGGTTTTAGTTTAGGTGGGAAGGTGTCCATGTATTGTGCTCTAAAAAATCAGTCTCTT TTTTCTCACCTAGTGGTGATGGATATTCTTCCTTTTGATTATAATGAGAAGAAATGCCAT GTGAAGCTTCCGTACAATATTAGCTACATGACGAAGATTCTTTTTAACATTAAGACGAAG ATGCGGCCGAGGAGCAAGGCCGAGTTTGTGGCCTACCTCCGAGCAGAGGTCCCGGACATA TCCAGCTCCTTCGAGCAGTTCATCTGCACATCGCTCAGGGAGGAAGTGGCAAAAGTGGGG AAAGCAGCAAAAGAGGCGAACGAGGCAAAAGCGGAGAAAGCAGCAAAAGAGGCGGACGCG GCGGGGAATGCAGCTGGAGTGATGGATAAGCCGATGGGTGGGACGGACTTCGTCGGTGCT GCGGACGCGATTGGCTGTTCGGAGGGCCCGGCCGCCAAGCAGCAAAAAAACCTGGTGTGG AAAATTAACGTGGATACCATATGGAGAGAACTCCCCCACATTCTCAGCTTCCCACTAAAT CACCAAGAGCGCAAGTATCACAACCCCTGCAGTTTCATCATTGGCAAGAAGTCAGACCTA GTCTATACCATGCCGCAGTACCAAACCATTATAAAGAATTACTTTCCCTCCAGCGAGAAT TTTATTTTGCCTGATGCGACTCATACTGTTTATATTGACAATGCAAAGGAGTGTGCTGAT ATTGTTAATAGGACATTGCGCTTGTGA
  • Download Fasta

  • Fasta :-

    MRSPLARTICALLYAVSLCKCFFPINGGEPIGSHRQGGHPSEGEKKMRSVLRKGSITHLC NKIRCVNYVQWYEGRRRISSATWNSGKRSPVSSRLFGSFETKIPGSQADLVVDGIAVSIS DNTNIFKEETSSTPIVLIHGCYGSKNNFRVFSKSLKSSKIVTLDLRNHGNSKHTDSMKYE EMESDIKKVLDELHIRKCCLVGFSLGGKVSMYCALKNQSLFSHLVVMDILPFDYNEKKCH VKLPYNISYMTKILFNIKTKMRPRSKAEFVAYLRAEVPDISSSFEQFICTSLREEVAKVG KAAKEANEAKAEKAAKEADAAGNAAGVMDKPMGGTDFVGAADAIGCSEGPAAKQQKNLVW KINVDTIWRELPHILSFPLNHQERKYHNPCSFIIGKKSDLVYTMPQYQTIIKNYFPSSEN FILPDATHTVYIDNAKECADIVNRTLRL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0947800176 SKHTDSMKYE0.993unspPcyM_0947800176 SKHTDSMKYE0.993unspPcyM_0947800176 SKHTDSMKYE0.993unspPcyM_0947800265 SMRPRSKAEF0.996unspPcyM_0947800106 SKIPGSQADL0.993unspPcyM_0947800154 SVFSKSLKSS0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India