PcyM_1004300 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_1004300OTHER0.9997180.0000650.000216
No Results

  • Fasta :-

    >PcyM_1004300 MTIVNVTVKWKSHVYNDLQLDTSQSILTFKQMLCTLTNVPPEKQKLMYKGLIKDDTDLST LNIKNNDKIMLVGSAESLIEKPSHVVFVEDLSKEDKERLHAKENILFEDQGIVNLGNTCY FNAVLQFLTSFDDLGAFLCNIKRKEKHLLKSTNDILFDSYIHFSQTFGKSPEPYVPLELL KSFRDVFPKFRTVNLRTKQFAQQDAEECMNAILTSLNDQTECKISDTLFSFKVISKVRCI EDDAAGGEKPTRENPPGDNAPSENPPTTAAGEEVETTEEFHNKLICYMGTHTTPVNHMHE GIRLSLIEKIQKQRSEDSKEDALFEKKSEVNSLPPYLIVHFLRFESKKISESNNAISVVT AKICRKVSFPETFDIYDFCSDELKTQLKVARNIVMKRKEADLNARGGAESVGESTAISAQ KNEGTNDNNANESTNGITNESTNEITNENTNESSNGNTNGVTSDQAMAAEEMGDKDSSPT KDLTEIPMGEYELISIITHKGRNEESGHYIAWKKMRSSIGADSNTYKEELTSKKKKGNDS MWYKMDDDKVSTHKFSSLDLCGGCSDFNIAILLLYKRKTLLCTQKELDSHGN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1004300.fa Sequence name : PcyM_1004300 Sequence length : 592 VALUES OF COMPUTED PARAMETERS Coef20 : 3.944 CoefTot : -0.778 ChDiff : -18 ZoneTo : 16 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.900 1.500 0.175 0.524 MesoH : -0.962 0.085 -0.522 0.149 MuHd_075 : 6.559 13.347 3.152 3.168 MuHd_095 : 21.406 18.360 8.161 5.344 MuHd_100 : 19.243 19.682 7.338 5.414 MuHd_105 : 13.037 15.878 4.894 4.198 Hmax_075 : 5.833 13.800 -1.428 3.900 Hmax_095 : 5.775 10.800 -0.269 3.946 Hmax_100 : 5.400 11.600 -0.225 4.560 Hmax_105 : 6.400 13.700 -0.157 4.037 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9521 0.0479 DFMC : 0.9746 0.0254
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 592 PcyM_1004300 MTIVNVTVKWKSHVYNDLQLDTSQSILTFKQMLCTLTNVPPEKQKLMYKGLIKDDTDLSTLNIKNNDKIMLVGSAESLIE 80 KPSHVVFVEDLSKEDKERLHAKENILFEDQGIVNLGNTCYFNAVLQFLTSFDDLGAFLCNIKRKEKHLLKSTNDILFDSY 160 IHFSQTFGKSPEPYVPLELLKSFRDVFPKFRTVNLRTKQFAQQDAEECMNAILTSLNDQTECKISDTLFSFKVISKVRCI 240 EDDAAGGEKPTRENPPGDNAPSENPPTTAAGEEVETTEEFHNKLICYMGTHTTPVNHMHEGIRLSLIEKIQKQRSEDSKE 320 DALFEKKSEVNSLPPYLIVHFLRFESKKISESNNAISVVTAKICRKVSFPETFDIYDFCSDELKTQLKVARNIVMKRKEA 400 DLNARGGAESVGESTAISAQKNEGTNDNNANESTNGITNESTNEITNENTNESSNGNTNGVTSDQAMAAEEMGDKDSSPT 480 KDLTEIPMGEYELISIITHKGRNEESGHYIAWKKMRSSIGADSNTYKEELTSKKKKGNDSMWYKMDDDKVSTHKFSSLDL 560 CGGCSDFNIAILLLYKRKTLLCTQKELDSHGN 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................ 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1004300 9 IVNVTVK|WK 0.077 . PcyM_1004300 11 NVTVKWK|SH 0.070 . PcyM_1004300 30 QSILTFK|QM 0.062 . PcyM_1004300 43 TNVPPEK|QK 0.064 . PcyM_1004300 45 VPPEKQK|LM 0.066 . PcyM_1004300 49 KQKLMYK|GL 0.070 . PcyM_1004300 53 MYKGLIK|DD 0.061 . PcyM_1004300 64 LSTLNIK|NN 0.062 . PcyM_1004300 68 NIKNNDK|IM 0.056 . PcyM_1004300 81 AESLIEK|PS 0.066 . PcyM_1004300 93 FVEDLSK|ED 0.055 . PcyM_1004300 96 DLSKEDK|ER 0.063 . PcyM_1004300 98 SKEDKER|LH 0.089 . PcyM_1004300 102 KERLHAK|EN 0.083 . PcyM_1004300 142 AFLCNIK|RK 0.056 . PcyM_1004300 143 FLCNIKR|KE 0.119 . PcyM_1004300 144 LCNIKRK|EK 0.101 . PcyM_1004300 146 NIKRKEK|HL 0.145 . PcyM_1004300 150 KEKHLLK|ST 0.106 . PcyM_1004300 169 FSQTFGK|SP 0.103 . PcyM_1004300 181 VPLELLK|SF 0.087 . PcyM_1004300 184 ELLKSFR|DV 0.237 . PcyM_1004300 189 FRDVFPK|FR 0.082 . PcyM_1004300 191 DVFPKFR|TV 0.099 . PcyM_1004300 196 FRTVNLR|TK 0.089 . PcyM_1004300 198 TVNLRTK|QF 0.073 . PcyM_1004300 223 NDQTECK|IS 0.068 . PcyM_1004300 232 DTLFSFK|VI 0.071 . PcyM_1004300 236 SFKVISK|VR 0.059 . PcyM_1004300 238 KVISKVR|CI 0.108 . PcyM_1004300 249 DAAGGEK|PT 0.066 . PcyM_1004300 252 GGEKPTR|EN 0.096 . PcyM_1004300 283 TEEFHNK|LI 0.087 . PcyM_1004300 303 HMHEGIR|LS 0.075 . PcyM_1004300 309 RLSLIEK|IQ 0.060 . PcyM_1004300 312 LIEKIQK|QR 0.057 . PcyM_1004300 314 EKIQKQR|SE 0.166 . PcyM_1004300 319 QRSEDSK|ED 0.070 . PcyM_1004300 326 EDALFEK|KS 0.063 . PcyM_1004300 327 DALFEKK|SE 0.097 . PcyM_1004300 343 LIVHFLR|FE 0.137 . PcyM_1004300 347 FLRFESK|KI 0.078 . PcyM_1004300 348 LRFESKK|IS 0.127 . PcyM_1004300 362 ISVVTAK|IC 0.070 . PcyM_1004300 365 VTAKICR|KV 0.117 . PcyM_1004300 366 TAKICRK|VS 0.089 . PcyM_1004300 384 FCSDELK|TQ 0.060 . PcyM_1004300 388 ELKTQLK|VA 0.067 . PcyM_1004300 391 TQLKVAR|NI 0.113 . PcyM_1004300 396 ARNIVMK|RK 0.083 . PcyM_1004300 397 RNIVMKR|KE 0.140 . PcyM_1004300 398 NIVMKRK|EA 0.102 . PcyM_1004300 405 EADLNAR|GG 0.084 . PcyM_1004300 421 TAISAQK|NE 0.073 . PcyM_1004300 475 AEEMGDK|DS 0.066 . PcyM_1004300 481 KDSSPTK|DL 0.107 . PcyM_1004300 500 ISIITHK|GR 0.068 . PcyM_1004300 502 IITHKGR|NE 0.097 . PcyM_1004300 513 GHYIAWK|KM 0.068 . PcyM_1004300 514 HYIAWKK|MR 0.118 . PcyM_1004300 516 IAWKKMR|SS 0.211 . PcyM_1004300 527 ADSNTYK|EE 0.066 . PcyM_1004300 533 KEELTSK|KK 0.058 . PcyM_1004300 534 EELTSKK|KK 0.088 . PcyM_1004300 535 ELTSKKK|KG 0.083 . PcyM_1004300 536 LTSKKKK|GN 0.190 . PcyM_1004300 544 NDSMWYK|MD 0.093 . PcyM_1004300 549 YKMDDDK|VS 0.064 . PcyM_1004300 554 DKVSTHK|FS 0.070 . PcyM_1004300 576 AILLLYK|RK 0.051 . PcyM_1004300 577 ILLLYKR|KT 0.097 . PcyM_1004300 578 LLLYKRK|TL 0.075 . PcyM_1004300 585 TLLCTQK|EL 0.070 . ____________________________^_________________

  • Fasta :-

    >PcyM_1004300 ATGACAATTGTTAATGTGACGGTAAAATGGAAGAGTCATGTGTACAACGATCTACAACTC GACACGTCTCAGTCGATCTTGACATTCAAGCAGATGCTATGTACTCTCACCAACGTTCCT CCAGAAAAACAGAAACTGATGTATAAAGGCCTCATCAAAGATGACACAGATCTATCCACA CTAAACATAAAAAATAATGATAAAATTATGCTAGTAGGTTCAGCAGAGAGTTTAATAGAA AAGCCATCCCATGTAGTCTTTGTGGAGGATCTCTCCAAAGAGGATAAAGAAAGATTACAT GCAAAAGAAAATATCCTTTTTGAAGACCAGGGAATTGTGAATTTAGGAAACACCTGCTAC TTCAACGCAGTATTGCAATTCTTAACCTCCTTTGATGATTTAGGGGCTTTCCTTTGCAAC ATAAAAAGAAAGGAAAAACATTTATTGAAATCCACGAACGATATTTTATTCGATTCATAT ATTCACTTTTCTCAAACGTTTGGAAAATCCCCAGAGCCATATGTCCCTCTGGAATTGTTA AAATCGTTTAGGGATGTGTTCCCCAAATTTAGAACTGTAAATTTAAGGACGAAACAATTT GCACAGCAGGATGCAGAAGAATGTATGAACGCCATTCTTACGTCATTGAATGACCAGACC GAGTGTAAAATTAGCGATACGTTGTTTTCATTTAAGGTGATCAGTAAGGTTAGGTGCATA GAGGACGATGCTGCTGGGGGAGAGAAACCAACTAGGGAGAACCCCCCAGGGGATAACGCA CCAAGTGAAAATCCACCCACTACAGCCGCAGGGGAGGAAGTAGAAACGACAGAAGAGTTT CACAATAAACTGATTTGCTACATGGGAACACACACTACCCCTGTGAATCACATGCATGAA GGAATAAGACTATCCCTGATTGAAAAAATCCAAAAGCAGCGATCTGAAGATAGTAAGGAA GATGCCCTGTTTGAAAAAAAATCAGAAGTGAACTCCCTCCCACCATATCTAATTGTTCAC TTTTTACGTTTCGAATCCAAGAAGATTTCCGAGTCGAATAATGCCATTTCCGTCGTTACT GCCAAAATATGCCGAAAGGTGAGTTTCCCAGAGACGTTTGACATTTATGATTTCTGCTCA GATGAACTGAAGACTCAATTGAAGGTAGCTCGAAATATTGTGATGAAGAGGAAGGAAGCC GACTTGAACGCTCGCGGGGGTGCCGAAAGTGTCGGAGAAAGCACTGCCATAAGTGCACAG AAAAACGAGGGCACGAACGATAATAATGCCAACGAGAGCACCAACGGGATCACCAACGAG AGCACCAACGAGATTACCAACGAGAACACCAACGAGAGCTCCAACGGCAATACGAACGGC GTGACGAGCGATCAGGCAATGGCTGCGGAGGAGATGGGTGATAAGGATAGCAGCCCAACG AAGGATTTGACTGAAATCCCCATGGGGGAATATGAACTGATTTCAATAATCACACACAAG GGGAGAAACGAAGAAAGTGGTCATTACATTGCCTGGAAAAAAATGAGGAGCTCTATAGGC GCAGATAGCAATACGTACAAGGAAGAACTAACCAGTAAGAAAAAAAAAGGAAACGATTCC ATGTGGTATAAGATGGATGATGATAAGGTAAGTACGCATAAATTTTCTTCTCTTGATTTA TGTGGAGGGTGCAGTGATTTTAACATAGCTATATTGCTTCTGTATAAGCGAAAGACCCTG TTATGCACACAGAAGGAGTTGGACTCGCACGGAAACTGA
  • Download Fasta

  • Fasta :-

    MTIVNVTVKWKSHVYNDLQLDTSQSILTFKQMLCTLTNVPPEKQKLMYKGLIKDDTDLST LNIKNNDKIMLVGSAESLIEKPSHVVFVEDLSKEDKERLHAKENILFEDQGIVNLGNTCY FNAVLQFLTSFDDLGAFLCNIKRKEKHLLKSTNDILFDSYIHFSQTFGKSPEPYVPLELL KSFRDVFPKFRTVNLRTKQFAQQDAEECMNAILTSLNDQTECKISDTLFSFKVISKVRCI EDDAAGGEKPTRENPPGDNAPSENPPTTAAGEEVETTEEFHNKLICYMGTHTTPVNHMHE GIRLSLIEKIQKQRSEDSKEDALFEKKSEVNSLPPYLIVHFLRFESKKISESNNAISVVT AKICRKVSFPETFDIYDFCSDELKTQLKVARNIVMKRKEADLNARGGAESVGESTAISAQ KNEGTNDNNANESTNGITNESTNEITNENTNESSNGNTNGVTSDQAMAAEEMGDKDSSPT KDLTEIPMGEYELISIITHKGRNEESGHYIAWKKMRSSIGADSNTYKEELTSKKKKGNDS MWYKMDDDKVSTHKFSSLDLCGGCSDFNIAILLLYKRKTLLCTQKELDSHGN

  • title: Active Site
  • coordinates: N114,C119,H508,D547
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_1004300368 SCRKVSFPET0.995unspPcyM_1004300368 SCRKVSFPET0.995unspPcyM_1004300368 SCRKVSFPET0.995unspPcyM_1004300410 SGGAESVGES0.994unspPcyM_1004300478 SDKDSSPTKD0.991unspPcyM_100430092 SVEDLSKEDK0.998unspPcyM_1004300318 SRSEDSKEDA0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India