PcyM_1014600 | eukaryotic translation initiation factor 3 subunit B, putative

UniProt_ID:

Computed_GO_Component_IDs: GO:0005852
Computed_GO_Components: eukaryotic translation initiation factor 3 complex
Computed_GO_Function_IDs: GO:0003723 GO:0003676 GO:0003743 GO:0031369
Computed_GO_Functions: RNA binding nucleic acid binding translation initiation factor activity translation initiation factor binding
Computed_GO_Process_IDs: GO:0006413
Computed_GO_Processes: translational initiation
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	PcyM_1014600	OTHER	0.999806	0.000177	0.000018

No Results

Fasta :-
>PcyM_1014600 MVKVSESELSDKGLEEFLSDDSDEGNEELLSKKYAEKEALITLETKFPKIVTILGIPKVE EEKHSRLAEVLKKLFIRHLNAKISDSSLLNIKIHMPVDEEKKTKGICFVTFNDSFQANEA VKILNKLKLDAKHVLTASKMDDIENIINRDEHVMPINVVGFTREKIRWWLYDDRCREQFI VRYDSHFEVHWFDPLEKEPQLIYTTYKKSAPFSSVQWSNQGSYLVSFHNPGIALWGGDNF EKLIRLQHKSVKEISFSPNENYVLTWDGTPASLRNEKSICIWRVITGKLLRSFITPEFSA RDKSYHYFLWSPDDKYIACIGKQKEVYVYELPSMLLMEDHEKKRTPLKYTFVKEFDWSPV DNIVSIWIPGTKTTPGTLILVDIPSRKELVSRKIYDVVHASIHWQSKGDYLCLKTTIEKK ISKKSKKEFTQLEIFRIREKNIPVDNIQIEGIKTKQFHWEESNSNRFALIVRDEATSRQQ IRFYKIDNKGTARNAKWTSTFDINSQMNFMRWSPQGSYFILASLGSEGLLYFCCLNANDE VEVIHKDEHLLANSVSWSNCGRYLVTSVSSMANAASSNYREENSETGFFIWSFQGRCLMT IKKPSFFQFFFRPHPKSLFSDKQKLDIKNNLKDYSKKFDVMDEKVRHAKRNQLISDRKTV EASFNERMEKVTQLFHSFKEYEEFKKNWEQFESQFEWEEKTVVIEHVLSVKQEIFA
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1014600.fa Sequence name : PcyM_1014600 Sequence length : 716 VALUES OF COMPUTED PARAMETERS Coef20 : 3.343 CoefTot : -0.001 ChDiff : 4 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.435 1.688 0.357 0.625 MesoH : -0.445 0.143 -0.358 0.178 MuHd_075 : 30.165 18.854 9.049 5.233 MuHd_095 : 30.978 15.980 7.952 5.447 MuHd_100 : 16.577 7.146 4.524 2.432 MuHd_105 : 17.686 9.286 4.763 2.679 Hmax_075 : 14.700 16.800 3.069 5.483 Hmax_095 : 7.088 11.988 0.539 4.515 Hmax_100 : -5.700 2.800 -3.072 2.220 Hmax_105 : 6.700 12.200 0.108 4.060 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8187 0.1813 DFMC : 0.9433 0.0567

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 716 PcyM_1014600 MVKVSESELSDKGLEEFLSDDSDEGNEELLSKKYAEKEALITLETKFPKIVTILGIPKVEEEKHSRLAEVLKKLFIRHLN 80 AKISDSSLLNIKIHMPVDEEKKTKGICFVTFNDSFQANEAVKILNKLKLDAKHVLTASKMDDIENIINRDEHVMPINVVG 160 FTREKIRWWLYDDRCREQFIVRYDSHFEVHWFDPLEKEPQLIYTTYKKSAPFSSVQWSNQGSYLVSFHNPGIALWGGDNF 240 EKLIRLQHKSVKEISFSPNENYVLTWDGTPASLRNEKSICIWRVITGKLLRSFITPEFSARDKSYHYFLWSPDDKYIACI 320 GKQKEVYVYELPSMLLMEDHEKKRTPLKYTFVKEFDWSPVDNIVSIWIPGTKTTPGTLILVDIPSRKELVSRKIYDVVHA 400 SIHWQSKGDYLCLKTTIEKKISKKSKKEFTQLEIFRIREKNIPVDNIQIEGIKTKQFHWEESNSNRFALIVRDEATSRQQ 480 IRFYKIDNKGTARNAKWTSTFDINSQMNFMRWSPQGSYFILASLGSEGLLYFCCLNANDEVEVIHKDEHLLANSVSWSNC 560 GRYLVTSVSSMANAASSNYREENSETGFFIWSFQGRCLMTIKKPSFFQFFFRPHPKSLFSDKQKLDIKNNLKDYSKKFDV 640 MDEKVRHAKRNQLISDRKTVEASFNERMEKVTQLFHSFKEYEEFKKNWEQFESQFEWEEKTVVIEHVLSVKQEIFA 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............................................................................ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1014600 3 ----MVK|VS 0.064 . PcyM_1014600 12 ESELSDK|GL 0.073 . PcyM_1014600 32 NEELLSK|KY 0.062 . PcyM_1014600 33 EELLSKK|YA 0.120 . PcyM_1014600 37 SKKYAEK|EA 0.073 . PcyM_1014600 46 LITLETK|FP 0.059 . PcyM_1014600 49 LETKFPK|IV 0.081 . PcyM_1014600 58 TILGIPK|VE 0.057 . PcyM_1014600 63 PKVEEEK|HS 0.061 . PcyM_1014600 66 EEEKHSR|LA 0.094 . PcyM_1014600 72 RLAEVLK|KL 0.066 . PcyM_1014600 73 LAEVLKK|LF 0.096 . PcyM_1014600 77 LKKLFIR|HL 0.121 . PcyM_1014600 82 IRHLNAK|IS 0.089 . PcyM_1014600 92 SSLLNIK|IH 0.059 . PcyM_1014600 101 MPVDEEK|KT 0.068 . PcyM_1014600 102 PVDEEKK|TK 0.104 . PcyM_1014600 104 DEEKKTK|GI 0.079 . PcyM_1014600 122 QANEAVK|IL 0.064 . PcyM_1014600 126 AVKILNK|LK 0.058 . PcyM_1014600 128 KILNKLK|LD 0.062 . PcyM_1014600 132 KLKLDAK|HV 0.076 . PcyM_1014600 139 HVLTASK|MD 0.059 . PcyM_1014600 149 IENIINR|DE 0.109 . PcyM_1014600 163 NVVGFTR|EK 0.073 . PcyM_1014600 165 VGFTREK|IR 0.054 . PcyM_1014600 167 FTREKIR|WW 0.088 . PcyM_1014600 174 WWLYDDR|CR 0.077 . PcyM_1014600 176 LYDDRCR|EQ 0.079 . PcyM_1014600 182 REQFIVR|YD 0.116 . PcyM_1014600 197 WFDPLEK|EP 0.056 . PcyM_1014600 207 LIYTTYK|KS 0.060 . PcyM_1014600 208 IYTTYKK|SA 0.115 . PcyM_1014600 242 GGDNFEK|LI 0.063 . PcyM_1014600 245 NFEKLIR|LQ 0.081 . PcyM_1014600 249 LIRLQHK|SV 0.133 . PcyM_1014600 252 LQHKSVK|EI 0.081 . PcyM_1014600 274 GTPASLR|NE 0.069 . PcyM_1014600 277 ASLRNEK|SI 0.200 . PcyM_1014600 283 KSICIWR|VI 0.096 . PcyM_1014600 288 WRVITGK|LL 0.066 . PcyM_1014600 291 ITGKLLR|SF 0.136 . PcyM_1014600 301 TPEFSAR|DK 0.159 . PcyM_1014600 303 EFSARDK|SY 0.095 . PcyM_1014600 315 LWSPDDK|YI 0.092 . PcyM_1014600 322 YIACIGK|QK 0.067 . PcyM_1014600 324 ACIGKQK|EV 0.077 . PcyM_1014600 342 LMEDHEK|KR 0.060 . PcyM_1014600 343 MEDHEKK|RT 0.086 . PcyM_1014600 344 EDHEKKR|TP 0.157 . PcyM_1014600 348 KKRTPLK|YT 0.099 . PcyM_1014600 353 LKYTFVK|EF 0.071 . PcyM_1014600 372 IWIPGTK|TT 0.058 . PcyM_1014600 386 LVDIPSR|KE 0.067 . PcyM_1014600 387 VDIPSRK|EL 0.068 . PcyM_1014600 392 RKELVSR|KI 0.139 . PcyM_1014600 393 KELVSRK|IY 0.093 . PcyM_1014600 407 SIHWQSK|GD 0.079 . PcyM_1014600 414 GDYLCLK|TT 0.063 . PcyM_1014600 419 LKTTIEK|KI 0.062 . PcyM_1014600 420 KTTIEKK|IS 0.088 . PcyM_1014600 423 IEKKISK|KS 0.067 . PcyM_1014600 424 EKKISKK|SK 0.145 . PcyM_1014600 426 KISKKSK|KE 0.101 . PcyM_1014600 427 ISKKSKK|EF 0.156 . PcyM_1014600 436 TQLEIFR|IR 0.095 . PcyM_1014600 438 LEIFRIR|EK 0.081 . PcyM_1014600 440 IFRIREK|NI 0.061 . PcyM_1014600 453 IQIEGIK|TK 0.054 . PcyM_1014600 455 IEGIKTK|QF 0.085 . PcyM_1014600 466 EESNSNR|FA 0.170 . PcyM_1014600 472 RFALIVR|DE 0.102 . PcyM_1014600 478 RDEATSR|QQ 0.075 . PcyM_1014600 482 TSRQQIR|FY 0.138 . PcyM_1014600 485 QQIRFYK|ID 0.142 . PcyM_1014600 489 FYKIDNK|GT 0.062 . PcyM_1014600 493 DNKGTAR|NA 0.094 . PcyM_1014600 496 GTARNAK|WT 0.201 . PcyM_1014600 511 SQMNFMR|WS 0.115 . PcyM_1014600 546 EVEVIHK|DE 0.061 . PcyM_1014600 562 SWSNCGR|YL 0.140 . PcyM_1014600 580 AASSNYR|EE 0.100 . PcyM_1014600 596 IWSFQGR|CL 0.158 . PcyM_1014600 602 RCLMTIK|KP 0.060 . PcyM_1014600 603 CLMTIKK|PS 0.093 . PcyM_1014600 612 FFQFFFR|PH 0.111 . PcyM_1014600 616 FFRPHPK|SL 0.083 . PcyM_1014600 622 KSLFSDK|QK 0.071 . PcyM_1014600 624 LFSDKQK|LD 0.066 . PcyM_1014600 628 KQKLDIK|NN 0.054 . PcyM_1014600 632 DIKNNLK|DY 0.078 . PcyM_1014600 636 NLKDYSK|KF 0.060 . PcyM_1014600 637 LKDYSKK|FD 0.105 . PcyM_1014600 644 FDVMDEK|VR 0.061 . PcyM_1014600 646 VMDEKVR|HA 0.090 . PcyM_1014600 649 EKVRHAK|RN 0.113 . PcyM_1014600 650 KVRHAKR|NQ 0.147 . PcyM_1014600 657 NQLISDR|KT 0.074 . PcyM_1014600 658 QLISDRK|TV 0.119 . PcyM_1014600 667 EASFNER|ME 0.081 . PcyM_1014600 670 FNERMEK|VT 0.092 . PcyM_1014600 679 QLFHSFK|EY 0.070 . PcyM_1014600 685 KEYEEFK|KN 0.068 . PcyM_1014600 686 EYEEFKK|NW 0.131 . PcyM_1014600 700 QFEWEEK|TV 0.068 . PcyM_1014600 711 EHVLSVK|QE 0.060 . ____________________________^_________________

Fasta :-
>PcyM_1014600 ATGGTGAAGGTCTCGGAGAGCGAACTGAGCGACAAGGGGCTGGAGGAATTCCTGTCGGAT GACAGCGACGAGGGAAACGAAGAACTCCTGAGCAAAAAGTATGCGGAGAAAGAAGCACTA ATCACGCTGGAAACCAAGTTCCCCAAAATAGTCACCATTTTGGGTATTCCAAAGGTGGAG GAAGAAAAACACAGCAGGTTGGCGGAGGTATTGAAAAAATTGTTTATAAGGCATTTGAAT GCCAAAATAAGTGACTCCTCCTTATTGAACATAAAAATACACATGCCAGTAGATGAAGAA AAAAAAACCAAAGGAATCTGCTTCGTAACATTTAACGATAGTTTTCAAGCAAACGAAGCA GTGAAAATTCTCAACAAGCTAAAGCTCGATGCCAAACACGTATTAACAGCTTCCAAAATG GATGACATAGAAAATATAATTAATCGAGATGAACACGTCATGCCAATTAACGTCGTTGGA TTTACAAGAGAAAAAATCAGATGGTGGTTATATGATGACAGATGTAGAGAGCAGTTCATT GTCAGATATGATTCACATTTTGAAGTCCATTGGTTTGATCCTCTAGAAAAAGAACCACAA CTTATTTATACCACGTATAAAAAGAGCGCACCATTTTCCAGTGTCCAATGGAGTAACCAA GGGTCTTACTTAGTTAGTTTTCACAACCCAGGTATAGCTCTCTGGGGGGGAGATAATTTC GAAAAACTTATTCGATTGCAACATAAGAGTGTAAAAGAAATTAGCTTCTCTCCAAATGAA AATTACGTCCTCACATGGGATGGTACCCCTGCTTCACTCAGAAATGAGAAGTCTATATGT ATTTGGAGAGTCATAACTGGGAAGCTATTGCGTTCTTTTATTACTCCAGAATTTAGTGCC AGGGATAAGAGCTATCATTACTTTCTGTGGAGTCCTGATGACAAATATATTGCTTGTATA GGGAAGCAGAAGGAGGTATACGTATATGAATTACCAAGTATGTTATTAATGGAAGATCAT GAAAAAAAGAGGACACCTCTCAAATATACCTTCGTTAAAGAGTTCGATTGGTCTCCTGTT GATAATATTGTATCCATATGGATCCCAGGGACAAAAACCACACCAGGGACATTAATTTTG GTAGATATTCCATCAAGAAAGGAACTCGTTTCGAGAAAAATTTATGATGTGGTACATGCA TCTATTCATTGGCAAAGTAAGGGAGATTACTTGTGTCTAAAAACAACTATTGAAAAAAAA ATCAGTAAGAAAAGCAAGAAGGAATTCACTCAGCTGGAAATTTTCAGAATTAGAGAAAAA AATATCCCTGTGGATAATATCCAAATTGAGGGAATTAAAACGAAGCAGTTCCACTGGGAA GAGTCCAATAGCAATCGATTCGCTTTAATCGTTAGGGATGAAGCTACGAGTAGACAACAA ATTAGGTTCTACAAAATTGACAACAAAGGAACAGCTAGAAATGCAAAGTGGACCAGCACC TTTGATATTAACAGTCAGATGAATTTTATGCGATGGTCACCACAGGGATCTTATTTCATT TTAGCGTCACTAGGATCAGAAGGTCTCCTTTATTTTTGCTGTCTCAATGCGAATGACGAA GTGGAAGTGATACACAAGGATGAACACCTCTTAGCAAACTCCGTTTCGTGGAGCAACTGT GGAAGGTATCTCGTCACATCTGTGTCTAGTATGGCAAACGCAGCGAGCTCCAACTACAGA GAAGAAAATAGCGAAACGGGATTCTTTATATGGTCCTTCCAAGGTAGGTGCCTAATGACT ATTAAGAAGCCCTCCTTCTTTCAGTTCTTCTTTAGACCACACCCTAAGTCACTCTTCAGC GACAAACAAAAATTGGATATCAAAAATAACTTAAAGGATTACTCCAAGAAGTTTGACGTC ATGGATGAGAAGGTTAGACACGCCAAACGAAATCAACTCATATCGGACCGAAAAACTGTG GAAGCGTCATTTAACGAGAGAATGGAAAAGGTCACTCAGCTGTTTCACTCCTTTAAGGAA TATGAAGAGTTCAAGAAGAACTGGGAGCAATTCGAGAGCCAGTTCGAGTGGGAGGAGAAG ACTGTTGTCATTGAACATGTCCTCTCAGTCAAGCAAGAAATATTCGCTTAA
Download Fasta

Fasta :-

MVKVSESELSDKGLEEFLSDDSDEGNEELLSKKYAEKEALITLETKFPKIVTILGIPKVE EEKHSRLAEVLKKLFIRHLNAKISDSSLLNIKIHMPVDEEKKTKGICFVTFNDSFQANEA VKILNKLKLDAKHVLTASKMDDIENIINRDEHVMPINVVGFTREKIRWWLYDDRCREQFI VRYDSHFEVHWFDPLEKEPQLIYTTYKKSAPFSSVQWSNQGSYLVSFHNPGIALWGGDNF EKLIRLQHKSVKEISFSPNENYVLTWDGTPASLRNEKSICIWRVITGKLLRSFITPEFSA RDKSYHYFLWSPDDKYIACIGKQKEVYVYELPSMLLMEDHEKKRTPLKYTFVKEFDWSPV DNIVSIWIPGTKTTPGTLILVDIPSRKELVSRKIYDVVHASIHWQSKGDYLCLKTTIEKK ISKKSKKEFTQLEIFRIREKNIPVDNIQIEGIKTKQFHWEESNSNRFALIVRDEATSRQQ IRFYKIDNKGTARNAKWTSTFDINSQMNFMRWSPQGSYFILASLGSEGLLYFCCLNANDE VEVIHKDEHLLANSVSWSNCGRYLVTSVSSMANAASSNYREENSETGFFIWSFQGRCLMT IKKPSFFQFFFRPHPKSLFSDKQKLDIKNNLKDYSKKFDVMDEKVRHAKRNQLISDRKTV EASFNERMEKVTQLFHSFKEYEEFKKNWEQFESQFEWEEKTVVIEHVLSVKQEIFA

SCOPe

title: polypeptide substrate binding site
coordinates: I53,I56,K63,R66,L67,E69,V70,L71,K73,L74,R77,I123,L124,N125,K126,K128,L129,V134,L135

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	PcyM_1014600	185 S	VRYDSHFEV	0.993	unsp	PcyM_1014600	185 S	VRYDSHFEV	0.993	unsp	PcyM_1014600	185 S	VRYDSHFEV	0.993	unsp	PcyM_1014600	250 S	LQHKSVKEI	0.995	unsp	PcyM_1014600	257 S	EISFSPNEN	0.992	unsp	PcyM_1014600	299 S	TPEFSARDK	0.995	unsp	PcyM_1014600	358 S	EFDWSPVDN	0.994	unsp	PcyM_1014600	422 S	EKKISKKSK	0.996	unsp	PcyM_1014600	425 S	ISKKSKKEF	0.998	unsp	PcyM_1014600	677 S	QLFHSFKEY	0.997	unsp	PcyM_1014600	10 S	ESELSDKGL	0.995	unsp	PcyM_1014600	22 S	LSDDSDEGN	0.995	unsp

PcyM_1014600 | eukaryotic translation initiation factor 3 subunit B, putative

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005852

Computed_GO_Components: eukaryotic translation initiation factor 3 complex

Computed_GO_Function_IDs: GO:0003723 GO:0003676 GO:0003743 GO:0031369

Computed_GO_Functions: RNA binding nucleic acid binding translation initiation factor activity translation initiation factor binding

Computed_GO_Process_IDs: GO:0006413

Computed_GO_Processes: translational initiation

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

SCOPe

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India