PcyM_1017700 | rhomboid protease ROM9, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1017700OTHER0.8995060.0097040.090789
No Results

  • Fasta :-

    >PcyM_1017700 MKKVEKHLALCGHWARGFSRYSDKQPFREKKKSQSILGTMQGIPLLRNMLPKWNGITMEH ARKVEKKQLEKIIKKTFEELRMKYAEVRVKYQDTLLSTWREERTKIKKRVTPLFLKGMIM KNVAFDRQHVKTVLHRVSFGGRFFFENLKHLCRDANVQYCRNLIQYHYRRAPVTYTLMAL HLLVFLLWMNAKPGDTYNYIGMPPGFYYPSSDIYSPPGVNNASSRYSSPFGLFNFLTLEF MYDHFCCGSKQLREKKLYTLITNLISHNTVQSLLLNTISLFYIGRSFEMIITSKNFFLTY FISGIISSYVQICYHKSGRSSPYGNVCVLGASGSISSILTTYTLMFPSSSIYLYGVLALP LALFTSLYCANEVYCVLTDKKDNTGHVAHLTGMFLGFLYYYFYVKGRVVM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1017700.fa Sequence name : PcyM_1017700 Sequence length : 410 VALUES OF COMPUTED PARAMETERS Coef20 : 3.909 CoefTot : -0.687 ChDiff : 30 ZoneTo : 22 KR : 5 DE : 1 CleavSite : 26 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.041 1.929 0.353 0.734 MesoH : 0.935 0.849 0.083 0.414 MuHd_075 : 37.013 17.156 6.526 8.365 MuHd_095 : 34.997 17.379 8.928 6.376 MuHd_100 : 42.296 23.513 11.827 8.932 MuHd_105 : 45.771 25.968 13.583 10.146 Hmax_075 : 11.200 9.917 -1.197 5.168 Hmax_095 : 8.925 11.100 1.536 3.730 Hmax_100 : 14.300 16.600 4.140 4.720 Hmax_105 : 17.033 16.567 3.464 5.973 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4634 0.5366 DFMC : 0.5985 0.4015
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 410 PcyM_1017700 MKKVEKHLALCGHWARGFSRYSDKQPFREKKKSQSILGTMQGIPLLRNMLPKWNGITMEHARKVEKKQLEKIIKKTFEEL 80 RMKYAEVRVKYQDTLLSTWREERTKIKKRVTPLFLKGMIMKNVAFDRQHVKTVLHRVSFGGRFFFENLKHLCRDANVQYC 160 RNLIQYHYRRAPVTYTLMALHLLVFLLWMNAKPGDTYNYIGMPPGFYYPSSDIYSPPGVNNASSRYSSPFGLFNFLTLEF 240 MYDHFCCGSKQLREKKLYTLITNLISHNTVQSLLLNTISLFYIGRSFEMIITSKNFFLTYFISGIISSYVQICYHKSGRS 320 SPYGNVCVLGASGSISSILTTYTLMFPSSSIYLYGVLALPLALFTSLYCANEVYCVLTDKKDNTGHVAHLTGMFLGFLYY 400 YFYVKGRVVM 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .......... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1017700 2 -----MK|KV 0.094 . PcyM_1017700 3 ----MKK|VE 0.074 . PcyM_1017700 6 -MKKVEK|HL 0.068 . PcyM_1017700 16 LCGHWAR|GF 0.107 . PcyM_1017700 20 WARGFSR|YS 0.166 . PcyM_1017700 24 FSRYSDK|QP 0.071 . PcyM_1017700 28 SDKQPFR|EK 0.116 . PcyM_1017700 30 KQPFREK|KK 0.069 . PcyM_1017700 31 QPFREKK|KS 0.385 . PcyM_1017700 32 PFREKKK|SQ 0.200 . PcyM_1017700 47 QGIPLLR|NM 0.076 . PcyM_1017700 52 LRNMLPK|WN 0.108 . PcyM_1017700 62 ITMEHAR|KV 0.227 . PcyM_1017700 63 TMEHARK|VE 0.079 . PcyM_1017700 66 HARKVEK|KQ 0.060 . PcyM_1017700 67 ARKVEKK|QL 0.242 . PcyM_1017700 71 EKKQLEK|II 0.061 . PcyM_1017700 74 QLEKIIK|KT 0.076 . PcyM_1017700 75 LEKIIKK|TF 0.091 . PcyM_1017700 81 KTFEELR|MK 0.089 . PcyM_1017700 83 FEELRMK|YA 0.071 . PcyM_1017700 88 MKYAEVR|VK 0.081 . PcyM_1017700 90 YAEVRVK|YQ 0.075 . PcyM_1017700 100 TLLSTWR|EE 0.078 . PcyM_1017700 103 STWREER|TK 0.266 . PcyM_1017700 105 WREERTK|IK 0.068 . PcyM_1017700 107 EERTKIK|KR 0.060 . PcyM_1017700 108 ERTKIKK|RV 0.125 . PcyM_1017700 109 RTKIKKR|VT 0.197 . PcyM_1017700 116 VTPLFLK|GM 0.058 . PcyM_1017700 121 LKGMIMK|NV 0.078 . PcyM_1017700 127 KNVAFDR|QH 0.087 . PcyM_1017700 131 FDRQHVK|TV 0.072 . PcyM_1017700 136 VKTVLHR|VS 0.092 . PcyM_1017700 142 RVSFGGR|FF 0.136 . PcyM_1017700 149 FFFENLK|HL 0.056 . PcyM_1017700 153 NLKHLCR|DA 0.116 . PcyM_1017700 161 ANVQYCR|NL 0.087 . PcyM_1017700 169 LIQYHYR|RA 0.103 . PcyM_1017700 170 IQYHYRR|AP 0.125 . PcyM_1017700 192 LLWMNAK|PG 0.067 . PcyM_1017700 225 VNNASSR|YS 0.141 . PcyM_1017700 250 HFCCGSK|QL 0.059 . PcyM_1017700 253 CGSKQLR|EK 0.079 . PcyM_1017700 255 SKQLREK|KL 0.072 . PcyM_1017700 256 KQLREKK|LY 0.196 . PcyM_1017700 285 SLFYIGR|SF 0.161 . PcyM_1017700 294 EMIITSK|NF 0.055 . PcyM_1017700 316 VQICYHK|SG 0.069 . PcyM_1017700 319 CYHKSGR|SS 0.179 . PcyM_1017700 380 YCVLTDK|KD 0.061 . PcyM_1017700 381 CVLTDKK|DN 0.099 . PcyM_1017700 405 YYYFYVK|GR 0.057 . PcyM_1017700 407 YFYVKGR|VV 0.132 . ____________________________^_________________

  • Fasta :-

    >PcyM_1017700 ATGAAAAAGGTGGAGAAGCACTTGGCCCTGTGTGGCCATTGGGCTCGGGGATTCTCCAGG TACTCAGATAAGCAACCCTTTAGGGAGAAGAAGAAAAGTCAGTCCATTTTAGGCACCATG CAGGGCATCCCTCTCCTGAGGAATATGCTTCCCAAATGGAATGGCATAACGATGGAACAT GCTCGCAAGGTAGAGAAGAAGCAGTTGGAAAAAATTATCAAAAAGACATTCGAAGAACTG CGTATGAAGTATGCAGAGGTAAGGGTGAAGTATCAGGATACATTATTATCCACATGGAGA GAAGAAAGAACGAAAATTAAAAAGAGAGTTACTCCACTCTTCCTAAAAGGGATGATAATG AAAAACGTAGCATTTGATAGACAACACGTAAAAACGGTCTTGCACAGGGTTTCATTTGGA GGGAGATTTTTTTTTGAAAATTTGAAGCATCTCTGTCGGGATGCAAACGTACAGTATTGT AGAAATTTAATTCAGTACCATTATAGGAGAGCACCTGTGACGTATACGTTAATGGCATTG CACCTTTTGGTTTTCCTTTTATGGATGAATGCGAAGCCTGGGGATACATACAACTATATT GGGATGCCTCCCGGGTTCTACTACCCTAGTTCGGATATCTATTCCCCTCCAGGGGTTAAT AATGCTTCTTCTCGTTATTCCTCTCCCTTTGGGCTGTTCAATTTTTTAACTCTTGAATTT ATGTATGACCACTTTTGCTGTGGATCTAAACAGCTGAGGGAGAAGAAACTATACACACTT ATAACCAACCTCATTAGCCACAACACTGTTCAGTCCCTTCTGCTGAATACCATTTCGTTG TTTTACATCGGGAGGTCTTTCGAGATGATTATTACATCGAAGAATTTTTTTTTAACATAT TTTATTAGTGGGATCATATCATCATATGTACAGATTTGTTACCACAAGAGTGGACGTTCC TCTCCCTATGGCAACGTTTGTGTCTTGGGGGCCAGCGGCAGCATCAGCTCCATTCTCACG ACGTACACGCTCATGTTCCCTAGCAGCAGCATTTATCTCTACGGGGTCCTGGCGCTTCCC CTGGCCCTGTTCACCTCCCTCTACTGCGCAAACGAGGTCTACTGCGTGCTGACGGACAAG AAGGACAACACAGGCCACGTGGCACACCTCACGGGGATGTTTCTGGGATTCCTCTACTAC TACTTCTACGTCAAGGGGAGAGTGGTCATGTAG
  • Download Fasta

  • Fasta :-

    MKKVEKHLALCGHWARGFSRYSDKQPFREKKKSQSILGTMQGIPLLRNMLPKWNGITMEH ARKVEKKQLEKIIKKTFEELRMKYAEVRVKYQDTLLSTWREERTKIKKRVTPLFLKGMIM KNVAFDRQHVKTVLHRVSFGGRFFFENLKHLCRDANVQYCRNLIQYHYRRAPVTYTLMAL HLLVFLLWMNAKPGDTYNYIGMPPGFYYPSSDIYSPPGVNNASSRYSSPFGLFNFLTLEF MYDHFCCGSKQLREKKLYTLITNLISHNTVQSLLLNTISLFYIGRSFEMIITSKNFFLTY FISGIISSYVQICYHKSGRSSPYGNVCVLGASGSISSILTTYTLMFPSSSIYLYGVLALP LALFTSLYCANEVYCVLTDKKDNTGHVAHLTGMFLGFLYYYFYVKGRVVM

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_1017700321 SSGRSSPYGN0.998unspPcyM_1017700321 SSGRSSPYGN0.998unspPcyM_1017700321 SSGRSSPYGN0.998unspPcyM_101770022 SFSRYSDKQP0.996unspPcyM_1017700228 SSRYSSPFGL0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India