PcyM_1027100 | rhomboid protease ROM4, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1027100OTHER0.9999970.0000010.000001
No Results

  • Fasta :-

    >PcyM_1027100 MGPEKAGNGNHGENSKSEAVSHVANSPKRLGAELPKKGEFKKAVPKKNILSDYRVNKGVL LSNEKLAKNADSSDREVASGGNKEDSDEESDLNITVGRGGGTRSKRDTTAAAGETATTAA ITTTATAAKKGRNGPSDIKILVTNDEPLHTLPSGAVGRRAPLNPFSSPILGKYRRKNKNA KIKVKDPRLNNNPLVGRLVVCISSTAILFWIFFAEMIFNYNTFNGRCISKVLYPIYTESV MKKREPFFVFLGYGACEYNLEESASDRHFVGTSASDKGWPTNKVEENRDARGESSWDSVN TRVYNQLGGLNTNYIRNYGEIYRLFWSVYLHGGFMHIIFNVICQIQILWIIEPDWGFIRT LILFFTSGVTGNLLSAVCDPCGVTIGSSGALYGLIGALFTYYIEYWKTIPRPCCVVIFML IVTIFGIFIGMFGYTDNYAHMGGCLGGILYGFATITTVSAADKCTLGERMLTSAPFSWFL SDETKELINAKAREKKIRGDNYRKKQIANKVHKNDALHVMMSLMKNRINEEGRPPCKMKL REWIVRITAASALIILWIVLFVYLLNETAYKSYTPMGQIKFTGVHTCFCCEVNKDKFPFI SAEKFYWCFTNEEATKYYCGK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1027100.fa Sequence name : PcyM_1027100 Sequence length : 621 VALUES OF COMPUTED PARAMETERS Coef20 : 2.408 CoefTot : -0.503 ChDiff : 21 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.841 3.124 0.750 1.017 MesoH : 1.147 1.313 0.190 0.559 MuHd_075 : 23.511 10.444 5.408 3.182 MuHd_095 : 4.991 3.213 1.641 1.269 MuHd_100 : 6.018 5.527 3.077 1.161 MuHd_105 : 8.326 6.584 4.382 1.476 Hmax_075 : -2.800 -4.725 -3.868 0.542 Hmax_095 : -12.075 -7.700 -5.601 -0.682 Hmax_100 : -9.000 -8.400 -4.413 0.000 Hmax_105 : -6.600 -7.500 -4.487 -0.210 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9988 0.0012 DFMC : 0.9981 0.0019
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 621 PcyM_1027100 MGPEKAGNGNHGENSKSEAVSHVANSPKRLGAELPKKGEFKKAVPKKNILSDYRVNKGVLLSNEKLAKNADSSDREVASG 80 GNKEDSDEESDLNITVGRGGGTRSKRDTTAAAGETATTAAITTTATAAKKGRNGPSDIKILVTNDEPLHTLPSGAVGRRA 160 PLNPFSSPILGKYRRKNKNAKIKVKDPRLNNNPLVGRLVVCISSTAILFWIFFAEMIFNYNTFNGRCISKVLYPIYTESV 240 MKKREPFFVFLGYGACEYNLEESASDRHFVGTSASDKGWPTNKVEENRDARGESSWDSVNTRVYNQLGGLNTNYIRNYGE 320 IYRLFWSVYLHGGFMHIIFNVICQIQILWIIEPDWGFIRTLILFFTSGVTGNLLSAVCDPCGVTIGSSGALYGLIGALFT 400 YYIEYWKTIPRPCCVVIFMLIVTIFGIFIGMFGYTDNYAHMGGCLGGILYGFATITTVSAADKCTLGERMLTSAPFSWFL 480 SDETKELINAKAREKKIRGDNYRKKQIANKVHKNDALHVMMSLMKNRINEEGRPPCKMKLREWIVRITAASALIILWIVL 560 FVYLLNETAYKSYTPMGQIKFTGVHTCFCCEVNKDKFPFISAEKFYWCFTNEEATKYYCGK 640 ................................................................................ 80 .........................P...................................................... 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............................................................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PcyM_1027100 5 --MGPEK|AG 0.058 . PcyM_1027100 16 NHGENSK|SE 0.069 . PcyM_1027100 28 HVANSPK|RL 0.092 . PcyM_1027100 29 VANSPKR|LG 0.123 . PcyM_1027100 36 LGAELPK|KG 0.061 . PcyM_1027100 37 GAELPKK|GE 0.093 . PcyM_1027100 41 PKKGEFK|KA 0.075 . PcyM_1027100 42 KKGEFKK|AV 0.189 . PcyM_1027100 46 FKKAVPK|KN 0.063 . PcyM_1027100 47 KKAVPKK|NI 0.122 . PcyM_1027100 54 NILSDYR|VN 0.074 . PcyM_1027100 57 SDYRVNK|GV 0.184 . PcyM_1027100 65 VLLSNEK|LA 0.056 . PcyM_1027100 68 SNEKLAK|NA 0.081 . PcyM_1027100 75 NADSSDR|EV 0.122 . PcyM_1027100 83 VASGGNK|ED 0.072 . PcyM_1027100 98 LNITVGR|GG 0.101 . PcyM_1027100 103 GRGGGTR|SK 0.153 . PcyM_1027100 105 GGGTRSK|RD 0.061 . PcyM_1027100 106 GGTRSKR|DT 0.754 *ProP* PcyM_1027100 129 TTATAAK|KG 0.070 . PcyM_1027100 130 TATAAKK|GR 0.079 . PcyM_1027100 132 TAAKKGR|NG 0.097 . PcyM_1027100 139 NGPSDIK|IL 0.054 . PcyM_1027100 158 PSGAVGR|RA 0.094 . PcyM_1027100 159 SGAVGRR|AP 0.115 . PcyM_1027100 172 SSPILGK|YR 0.070 . PcyM_1027100 174 PILGKYR|RK 0.075 . PcyM_1027100 175 ILGKYRR|KN 0.119 . PcyM_1027100 176 LGKYRRK|NK 0.089 . PcyM_1027100 178 KYRRKNK|NA 0.195 . PcyM_1027100 181 RKNKNAK|IK 0.070 . PcyM_1027100 183 NKNAKIK|VK 0.082 . PcyM_1027100 185 NAKIKVK|DP 0.070 . PcyM_1027100 188 IKVKDPR|LN 0.097 . PcyM_1027100 197 NNPLVGR|LV 0.090 . PcyM_1027100 226 YNTFNGR|CI 0.110 . PcyM_1027100 230 NGRCISK|VL 0.066 . PcyM_1027100 242 YTESVMK|KR 0.061 . PcyM_1027100 243 TESVMKK|RE 0.095 . PcyM_1027100 244 ESVMKKR|EP 0.174 . PcyM_1027100 267 EESASDR|HF 0.090 . PcyM_1027100 277 GTSASDK|GW 0.077 . PcyM_1027100 283 KGWPTNK|VE 0.056 . PcyM_1027100 288 NKVEENR|DA 0.142 . PcyM_1027100 291 EENRDAR|GE 0.240 . PcyM_1027100 302 WDSVNTR|VY 0.106 . PcyM_1027100 316 LNTNYIR|NY 0.094 . PcyM_1027100 323 NYGEIYR|LF 0.075 . PcyM_1027100 359 PDWGFIR|TL 0.079 . PcyM_1027100 407 YYIEYWK|TI 0.054 . PcyM_1027100 411 YWKTIPR|PC 0.098 . PcyM_1027100 463 TVSAADK|CT 0.076 . PcyM_1027100 469 KCTLGER|ML 0.080 . PcyM_1027100 485 FLSDETK|EL 0.070 . PcyM_1027100 491 KELINAK|AR 0.071 . PcyM_1027100 493 LINAKAR|EK 0.105 . PcyM_1027100 495 NAKAREK|KI 0.060 . PcyM_1027100 496 AKAREKK|IR 0.421 . PcyM_1027100 498 AREKKIR|GD 0.139 . PcyM_1027100 503 IRGDNYR|KK 0.107 . PcyM_1027100 504 RGDNYRK|KQ 0.070 . PcyM_1027100 505 GDNYRKK|QI 0.146 . PcyM_1027100 510 KKQIANK|VH 0.057 . PcyM_1027100 513 IANKVHK|ND 0.070 . PcyM_1027100 525 VMMSLMK|NR 0.059 . PcyM_1027100 527 MSLMKNR|IN 0.130 . PcyM_1027100 533 RINEEGR|PP 0.092 . PcyM_1027100 537 EGRPPCK|MK 0.058 . PcyM_1027100 539 RPPCKMK|LR 0.087 . PcyM_1027100 541 PCKMKLR|EW 0.099 . PcyM_1027100 546 LREWIVR|IT 0.100 . PcyM_1027100 571 LNETAYK|SY 0.083 . PcyM_1027100 580 TPMGQIK|FT 0.098 . PcyM_1027100 594 FCCEVNK|DK 0.070 . PcyM_1027100 596 CEVNKDK|FP 0.068 . PcyM_1027100 604 PFISAEK|FY 0.057 . PcyM_1027100 616 TNEEATK|YY 0.074 . PcyM_1027100 621 TKYYCGK|-- 0.080 . ____________________________^_________________

  • Fasta :-

    >PcyM_1027100 ATGGGGCCGGAGAAAGCGGGAAACGGGAATCATGGAGAAAATAGCAAGAGCGAGGCGGTC AGCCACGTGGCGAACTCGCCCAAGAGGCTGGGCGCAGAGCTCCCCAAAAAGGGAGAATTC AAAAAAGCGGTGCCAAAGAAAAATATCCTGAGTGATTACAGAGTAAACAAAGGGGTGCTC CTGTCGAACGAGAAGTTAGCGAAGAATGCGGACTCGTCCGACAGGGAGGTGGCATCCGGT GGCAACAAAGAAGACAGTGACGAGGAGAGTGACCTTAATATTACTGTTGGACGGGGCGGA GGCACTCGATCGAAAAGAGATACAACGGCTGCAGCCGGAGAAACCGCCACCACCGCCGCC ATCACCACCACCGCCACCGCCGCTAAGAAAGGAAGAAACGGCCCCAGTGACATAAAAATT TTAGTGACGAACGATGAGCCTCTGCACACGCTGCCATCAGGAGCCGTGGGGAGAAGAGCT CCGCTGAATCCTTTTTCATCCCCCATCCTTGGAAAGTACAGGAGAAAAAATAAAAATGCT AAAATAAAAGTCAAAGACCCAAGGCTTAATAATAACCCACTGGTGGGGAGGTTAGTAGTG TGTATATCTTCAACAGCGATCCTGTTTTGGATCTTCTTCGCAGAAATGATTTTTAATTAC AATACATTTAATGGGAGATGTATTTCGAAGGTACTATATCCTATTTACACAGAATCTGTG ATGAAGAAAAGGGAACCTTTTTTTGTGTTCCTTGGTTATGGAGCATGTGAATACAATTTA GAGGAGTCTGCATCGGATCGACATTTTGTCGGAACCAGTGCATCGGACAAAGGTTGGCCC ACAAACAAGGTAGAAGAAAATAGAGATGCAAGAGGAGAATCCAGCTGGGATAGTGTAAAT ACACGTGTATATAATCAGTTAGGTGGGTTGAACACAAATTACATAAGAAATTATGGAGAA ATCTATCGACTGTTTTGGTCTGTCTATCTTCATGGTGGATTCATGCACATAATATTTAAT GTGATATGTCAGATACAGATTCTTTGGATTATTGAACCTGATTGGGGATTCATACGAACT CTGATTCTTTTCTTTACTTCCGGAGTTACAGGGAATTTACTCTCTGCTGTTTGTGATCCA TGTGGTGTCACCATCGGCTCTTCTGGTGCATTGTATGGTTTGATAGGAGCTCTCTTTACT TACTATATTGAATACTGGAAAACCATTCCTAGACCCTGTTGTGTCGTAATTTTTATGCTT ATAGTAACCATTTTTGGTATTTTTATTGGTATGTTTGGATATACAGATAATTACGCTCAC ATGGGTGGTTGTCTAGGGGGGATACTCTATGGCTTTGCTACCATCACTACTGTCTCTGCA GCGGATAAATGCACACTAGGGGAACGTATGTTAACATCTGCACCCTTTTCATGGTTTTTA TCTGATGAAACGAAGGAGTTGATTAATGCCAAAGCTAGGGAAAAGAAAATACGAGGAGAT AACTACCGAAAGAAACAAATCGCTAACAAGGTCCATAAGAATGACGCTCTCCATGTGATG ATGTCTCTCATGAAGAATCGAATAAATGAGGAAGGTAGACCTCCATGTAAAATGAAACTA CGCGAATGGATCGTCCGAATCACTGCAGCCTCTGCACTCATCATCCTATGGATCGTTCTC TTCGTCTACCTACTCAATGAGACCGCCTACAAGTCCTACACCCCCATGGGGCAGATCAAA TTTACTGGTGTCCACACTTGCTTCTGCTGCGAGGTCAACAAGGACAAGTTCCCCTTTATC AGTGCAGAGAAGTTTTACTGGTGCTTCACCAACGAGGAGGCTACCAAGTACTACTGCGGC AAGTGA
  • Download Fasta

  • Fasta :-

    MGPEKAGNGNHGENSKSEAVSHVANSPKRLGAELPKKGEFKKAVPKKNILSDYRVNKGVL LSNEKLAKNADSSDREVASGGNKEDSDEESDLNITVGRGGGTRSKRDTTAAAGETATTAA ITTTATAAKKGRNGPSDIKILVTNDEPLHTLPSGAVGRRAPLNPFSSPILGKYRRKNKNA KIKVKDPRLNNNPLVGRLVVCISSTAILFWIFFAEMIFNYNTFNGRCISKVLYPIYTESV MKKREPFFVFLGYGACEYNLEESASDRHFVGTSASDKGWPTNKVEENRDARGESSWDSVN TRVYNQLGGLNTNYIRNYGEIYRLFWSVYLHGGFMHIIFNVICQIQILWIIEPDWGFIRT LILFFTSGVTGNLLSAVCDPCGVTIGSSGALYGLIGALFTYYIEYWKTIPRPCCVVIFML IVTIFGIFIGMFGYTDNYAHMGGCLGGILYGFATITTVSAADKCTLGERMLTSAPFSWFL SDETKELINAKAREKKIRGDNYRKKQIANKVHKNDALHVMMSLMKNRINEEGRPPCKMKL REWIVRITAASALIILWIVLFVYLLNETAYKSYTPMGQIKFTGVHTCFCCEVNKDKFPFI SAEKFYWCFTNEEATKYYCGK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_102710086 SNKEDSDEES0.998unspPcyM_102710086 SNKEDSDEES0.998unspPcyM_102710086 SNKEDSDEES0.998unspPcyM_1027100104 SGGTRSKRDT0.996unspPcyM_1027100294 SARGESSWDS0.995unspPcyM_102710026 SHVANSPKRL0.997unspPcyM_102710073 SNADSSDREV0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India