PcyM_1113300 | rhomboid protease ROM7, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1113300SP0.0038590.9749470.021195CS pos: 18-19. GNA-FL. Pr: 0.8813
No Results

  • Fasta :-

    >PcyM_1113300 MNLLILLAIATCLTRGNAFLHKRINYKRIGHARISDKPRTIQYDHVLYKVHRKKGVKKIY SFRRHVSEIWNNIKTRRIENYMEDFFQTEQVKNTLQNNFLCFKHLFNKCKLDRVIIAVNV ALYFYLNRIDKDDEKKIFFHKGNLLEVKEQKAEKYKCNYHDVYKTKNFKTFFTSLFIHKN ILHLYFNMSSLISIYKLISLIYTNSQIFVTYLLSGVLSNIISYICYLREKKENVLLKNLI LKNASNENNVLINKNNKIICGSSSCIYSLYGMHMTYIIFFYFKHNYIVNSNFLYNFFYSF VSSLLLENVSHLNHMLGFLCGFFFSSLIVLFDRNA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1113300.fa Sequence name : PcyM_1113300 Sequence length : 335 VALUES OF COMPUTED PARAMETERS Coef20 : 4.825 CoefTot : 0.185 ChDiff : 26 ZoneTo : 35 KR : 6 DE : 0 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.588 2.347 0.491 0.849 MesoH : 0.799 0.881 -0.097 0.459 MuHd_075 : 41.093 27.739 12.178 9.784 MuHd_095 : 24.294 20.492 8.132 7.251 MuHd_100 : 24.365 21.360 7.882 6.942 MuHd_105 : 21.068 17.995 6.757 6.010 Hmax_075 : 12.000 16.200 2.135 6.200 Hmax_095 : 10.000 15.200 3.166 4.909 Hmax_100 : 9.600 14.500 2.405 5.320 Hmax_105 : 18.900 21.500 5.581 7.443 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0547 0.9453 DFMC : 0.1122 0.8878 This protein is probably imported in mitochondria. f(Ser) = 0.0286 f(Arg) = 0.1143 CMi = 0.12422 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 335 PcyM_1113300 MNLLILLAIATCLTRGNAFLHKRINYKRIGHARISDKPRTIQYDHVLYKVHRKKGVKKIYSFRRHVSEIWNNIKTRRIEN 80 YMEDFFQTEQVKNTLQNNFLCFKHLFNKCKLDRVIIAVNVALYFYLNRIDKDDEKKIFFHKGNLLEVKEQKAEKYKCNYH 160 DVYKTKNFKTFFTSLFIHKNILHLYFNMSSLISIYKLISLIYTNSQIFVTYLLSGVLSNIISYICYLREKKENVLLKNLI 240 LKNASNENNVLINKNNKIICGSSSCIYSLYGMHMTYIIFFYFKHNYIVNSNFLYNFFYSFVSSLLLENVSHLNHMLGFLC 320 GFFFSSLIVLFDRNA 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1113300 15 IATCLTR|GN 0.069 . PcyM_1113300 22 GNAFLHK|RI 0.070 . PcyM_1113300 23 NAFLHKR|IN 0.176 . PcyM_1113300 27 HKRINYK|RI 0.086 . PcyM_1113300 28 KRINYKR|IG 0.199 . PcyM_1113300 33 KRIGHAR|IS 0.160 . PcyM_1113300 37 HARISDK|PR 0.073 . PcyM_1113300 39 RISDKPR|TI 0.116 . PcyM_1113300 49 YDHVLYK|VH 0.065 . PcyM_1113300 52 VLYKVHR|KK 0.100 . PcyM_1113300 53 LYKVHRK|KG 0.086 . PcyM_1113300 54 YKVHRKK|GV 0.199 . PcyM_1113300 57 HRKKGVK|KI 0.069 . PcyM_1113300 58 RKKGVKK|IY 0.136 . PcyM_1113300 63 KKIYSFR|RH 0.078 . PcyM_1113300 64 KIYSFRR|HV 0.335 . PcyM_1113300 74 EIWNNIK|TR 0.059 . PcyM_1113300 76 WNNIKTR|RI 0.159 . PcyM_1113300 77 NNIKTRR|IE 0.149 . PcyM_1113300 92 FQTEQVK|NT 0.057 . PcyM_1113300 103 NNFLCFK|HL 0.061 . PcyM_1113300 108 FKHLFNK|CK 0.059 . PcyM_1113300 110 HLFNKCK|LD 0.073 . PcyM_1113300 113 NKCKLDR|VI 0.104 . PcyM_1113300 128 LYFYLNR|ID 0.077 . PcyM_1113300 131 YLNRIDK|DD 0.235 . PcyM_1113300 135 IDKDDEK|KI 0.063 . PcyM_1113300 136 DKDDEKK|IF 0.098 . PcyM_1113300 141 KKIFFHK|GN 0.066 . PcyM_1113300 148 GNLLEVK|EQ 0.058 . PcyM_1113300 151 LEVKEQK|AE 0.059 . PcyM_1113300 154 KEQKAEK|YK 0.068 . PcyM_1113300 156 QKAEKYK|CN 0.073 . PcyM_1113300 164 NYHDVYK|TK 0.061 . PcyM_1113300 166 HDVYKTK|NF 0.076 . PcyM_1113300 169 YKTKNFK|TF 0.066 . PcyM_1113300 179 TSLFIHK|NI 0.062 . PcyM_1113300 196 SLISIYK|LI 0.067 . PcyM_1113300 228 SYICYLR|EK 0.066 . PcyM_1113300 230 ICYLREK|KE 0.059 . PcyM_1113300 231 CYLREKK|EN 0.114 . PcyM_1113300 237 KENVLLK|NL 0.071 . PcyM_1113300 242 LKNLILK|NA 0.076 . PcyM_1113300 254 NNVLINK|NN 0.057 . PcyM_1113300 257 LINKNNK|II 0.071 . PcyM_1113300 283 IIFFYFK|HN 0.069 . PcyM_1113300 333 LIVLFDR|NA 0.095 . ____________________________^_________________

  • Fasta :-

    >PcyM_1113300 ATGAACCTTCTAATTTTACTCGCAATCGCAACGTGCCTTACGAGAGGAAACGCATTTCTG CACAAAAGGATCAACTACAAGAGGATAGGACATGCGCGAATAAGCGACAAACCCAGGACC ATACAATATGACCACGTCCTTTACAAAGTGCATAGAAAGAAGGGAGTAAAAAAAATTTAC TCCTTCAGGAGACACGTATCAGAAATATGGAATAACATTAAAACGAGGAGGATAGAAAAT TATATGGAAGATTTTTTTCAAACGGAGCAAGTAAAGAATACGCTTCAAAATAATTTCCTC TGTTTTAAACACCTATTTAATAAGTGTAAGTTGGACAGAGTAATTATAGCTGTTAATGTG GCCCTGTATTTTTACTTGAACAGAATTGATAAGGATGATGAGAAGAAGATTTTTTTTCAC AAGGGGAATTTATTGGAGGTGAAAGAACAGAAGGCAGAAAAATACAAATGTAATTATCAC GATGTTTACAAAACAAAAAATTTTAAAACATTTTTCACTTCCCTTTTTATTCATAAAAAT ATTTTGCATTTATATTTTAACATGAGTTCGCTAATTTCCATATATAAATTAATTTCGCTA ATTTACACGAACAGCCAAATATTTGTTACTTACCTTTTGTCAGGTGTCCTGTCCAACATC ATATCTTACATTTGTTACTTGCGAGAAAAAAAAGAAAATGTGCTTTTGAAAAATTTAATT TTAAAAAATGCTTCCAATGAAAATAATGTCCTTATAAATAAAAATAATAAAATTATTTGT GGAAGCAGTTCCTGTATTTATTCGCTTTATGGAATGCATATGACATATATTATATTTTTT TACTTTAAACATAATTATATTGTGAACAGTAATTTTTTGTACAATTTTTTTTATTCATTT GTTTCATCTCTGCTTCTCGAAAATGTCAGTCACTTGAATCATATGTTGGGCTTCCTTTGT GGTTTTTTTTTCTCTTCCCTCATAGTGCTCTTTGACAGGAATGCCTAA
  • Download Fasta

  • Fasta :-

    MNLLILLAIATCLTRGNAFLHKRINYKRIGHARISDKPRTIQYDHVLYKVHRKKGVKKIY SFRRHVSEIWNNIKTRRIENYMEDFFQTEQVKNTLQNNFLCFKHLFNKCKLDRVIIAVNV ALYFYLNRIDKDDEKKIFFHKGNLLEVKEQKAEKYKCNYHDVYKTKNFKTFFTSLFIHKN ILHLYFNMSSLISIYKLISLIYTNSQIFVTYLLSGVLSNIISYICYLREKKENVLLKNLI LKNASNENNVLINKNNKIICGSSSCIYSLYGMHMTYIIFFYFKHNYIVNSNFLYNFFYSF VSSLLLENVSHLNHMLGFLCGFFFSSLIVLFDRNA

    No Results
No Results
No Results
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India