PcyM_1115400 | ubiquitin-conjugating enzyme, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1115400OTHER0.9999110.0000280.000061
No Results

  • Fasta :-

    >PcyM_1115400 MNSTTRSSKELLRLQKELKDIENENVQEIDAHVKDNNISEWVGFIKGPSGTPYEDGHFIL DITIPNDYPYNPPKMKFNTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLS DPQPDDPQDAEVAKMYKENYSLFLKTASVWTKTFATGPKLEPREVIIKKITEMGFTEDQA KKALMKADWNETLALNTLLENS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1115400.fa Sequence name : PcyM_1115400 Sequence length : 202 VALUES OF COMPUTED PARAMETERS Coef20 : 4.127 CoefTot : 0.224 ChDiff : -6 ZoneTo : 9 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.706 1.224 0.026 0.381 MesoH : -0.719 -0.051 -0.490 0.166 MuHd_075 : 9.557 4.663 3.501 1.310 MuHd_095 : 45.247 18.982 11.508 7.530 MuHd_100 : 55.142 25.607 13.627 10.033 MuHd_105 : 55.544 27.072 13.278 10.859 Hmax_075 : -10.500 -1.400 -4.266 -0.163 Hmax_095 : 6.700 5.600 -0.266 2.040 Hmax_100 : 9.500 8.300 -0.011 2.860 Hmax_105 : 14.200 11.000 1.684 3.530 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7861 0.2139 DFMC : 0.7734 0.2266
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 202 PcyM_1115400 MNSTTRSSKELLRLQKELKDIENENVQEIDAHVKDNNISEWVGFIKGPSGTPYEDGHFILDITIPNDYPYNPPKMKFNTK 80 IWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENYSLFLKTASVWTKTFATGPKL 160 EPREVIIKKITEMGFTEDQAKKALMKADWNETLALNTLLENS 240 ................................................................................ 80 ................................................................................ 160 .......................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1115400 6 -MNSTTR|SS 0.126 . PcyM_1115400 9 STTRSSK|EL 0.108 . PcyM_1115400 13 SSKELLR|LQ 0.073 . PcyM_1115400 16 ELLRLQK|EL 0.137 . PcyM_1115400 19 RLQKELK|DI 0.091 . PcyM_1115400 34 EIDAHVK|DN 0.075 . PcyM_1115400 46 EWVGFIK|GP 0.065 . PcyM_1115400 74 YPYNPPK|MK 0.072 . PcyM_1115400 76 YNPPKMK|FN 0.078 . PcyM_1115400 80 KMKFNTK|IW 0.080 . PcyM_1115400 99 ICLDVLK|NE 0.052 . PcyM_1115400 109 SPALTIR|TA 0.123 . PcyM_1115400 134 QDAEVAK|MY 0.075 . PcyM_1115400 137 EVAKMYK|EN 0.060 . PcyM_1115400 145 NYSLFLK|TA 0.074 . PcyM_1115400 152 TASVWTK|TF 0.087 . PcyM_1115400 159 TFATGPK|LE 0.057 . PcyM_1115400 163 GPKLEPR|EV 0.164 . PcyM_1115400 168 PREVIIK|KI 0.073 . PcyM_1115400 169 REVIIKK|IT 0.140 . PcyM_1115400 181 FTEDQAK|KA 0.066 . PcyM_1115400 182 TEDQAKK|AL 0.128 . PcyM_1115400 186 AKKALMK|AD 0.066 . ____________________________^_________________

  • Fasta :-

    >PcyM_1115400 ATGAATTCCACAACGAGAAGTTCAAAGGAGTTACTCCGTCTGCAGAAGGAGCTAAAAGAC ATTGAAAATGAAAATGTGCAAGAAATAGATGCGCACGTGAAGGACAACAACATTTCTGAG TGGGTTGGTTTTATCAAGGGGCCATCGGGGACGCCCTATGAAGATGGGCATTTTATCTTG GACATAACTATACCGAATGATTACCCGTATAACCCGCCAAAGATGAAATTCAATACCAAA ATATGGCATCCCAATATTTCAAGCCAAACAGGGGCAATCTGCCTGGACGTCTTAAAAAAC GAATGGAGTCCCGCGTTGACGATTAGAACTGCGCTTTTGTCCATTCAGGCGCTCTTATCA GATCCGCAACCAGACGACCCCCAAGACGCAGAAGTAGCAAAAATGTACAAAGAGAACTAT TCCCTGTTTTTAAAAACAGCCAGTGTATGGACGAAGACTTTTGCCACCGGACCGAAACTC GAGCCAAGAGAAGTCATTATTAAGAAGATCACCGAAATGGGATTTACGGAGGACCAGGCG AAGAAAGCCTTAATGAAGGCCGATTGGAATGAAACCCTGGCGTTAAATACCCTCCTCGAA AATTCATAA
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  • Fasta :-

    MNSTTRSSKELLRLQKELKDIENENVQEIDAHVKDNNISEWVGFIKGPSGTPYEDGHFIL DITIPNDYPYNPPKMKFNTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLS DPQPDDPQDAEVAKMYKENYSLFLKTASVWTKTFATGPKLEPREVIIKKITEMGFTEDQA KKALMKADWNETLALNTLLENS

  • title: active site cysteine
  • coordinates: C94
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_11154007 SSTTRSSKEL0.991unspPcyM_11154008 STTRSSKELL0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India