PcyM_1118100 | proteasome subunit alpha type-7, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_1118100OTHER0.9999390.0000270.000034
No Results

  • Fasta :-

    >PcyM_1118100 MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPRTTE KLIKLDEHNCLAFAGLNADARVLVNKTRLECQRYFLNMDEPAPVDYIAKYVAKVQQKFTH RGGVRPFGIATLIAGFKNNKEICIYQTEPSGIYASWKAQAIGKNAKVVQEFLEKNYQENM EQNDCLLLAMKAIFEVVELSSKNIEVALLTEKELSFIDEQQINALVDVIDSERTKKNSQN E
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1118100.fa Sequence name : PcyM_1118100 Sequence length : 241 VALUES OF COMPUTED PARAMETERS Coef20 : 3.580 CoefTot : -0.045 ChDiff : 0 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.906 1.553 0.127 0.476 MesoH : -1.156 0.063 -0.555 0.115 MuHd_075 : 28.573 14.937 6.543 4.663 MuHd_095 : 12.129 9.750 3.119 2.812 MuHd_100 : 14.109 14.515 5.303 4.707 MuHd_105 : 15.524 17.553 6.307 6.098 Hmax_075 : 12.862 11.025 1.795 4.043 Hmax_095 : 7.000 6.037 0.113 3.526 Hmax_100 : 7.400 12.100 0.248 4.210 Hmax_105 : 3.600 11.600 -0.028 4.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9775 0.0225 DFMC : 0.9716 0.0284
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 241 PcyM_1118100 MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPRTTEKLIKLDEHNCLAFAGLNADA 80 RVLVNKTRLECQRYFLNMDEPAPVDYIAKYVAKVQQKFTHRGGVRPFGIATLIAGFKNNKEICIYQTEPSGIYASWKAQA 160 IGKNAKVVQEFLEKNYQENMEQNDCLLLAMKAIFEVVELSSKNIEVALLTEKELSFIDEQQINALVDVIDSERTKKNSQN 240 E 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 . 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1118100 5 --MSYDR|AI 0.082 . PcyM_1118100 27 HALEAVK|KG 0.060 . PcyM_1118100 28 ALEAVKK|GG 0.115 . PcyM_1118100 36 GCAVAIK|SS 0.079 . PcyM_1118100 47 AVLAVEK|KN 0.062 . PcyM_1118100 48 VLAVEKK|NI 0.105 . PcyM_1118100 52 EKKNIPK|LQ 0.060 . PcyM_1118100 57 PKLQNPR|TT 0.088 . PcyM_1118100 61 NPRTTEK|LI 0.067 . PcyM_1118100 64 TTEKLIK|LD 0.065 . PcyM_1118100 81 GLNADAR|VL 0.093 . PcyM_1118100 86 ARVLVNK|TR 0.065 . PcyM_1118100 88 VLVNKTR|LE 0.080 . PcyM_1118100 93 TRLECQR|YF 0.088 . PcyM_1118100 109 PVDYIAK|YV 0.089 . PcyM_1118100 113 IAKYVAK|VQ 0.067 . PcyM_1118100 117 VAKVQQK|FT 0.090 . PcyM_1118100 121 QQKFTHR|GG 0.077 . PcyM_1118100 125 THRGGVR|PF 0.107 . PcyM_1118100 137 TLIAGFK|NN 0.059 . PcyM_1118100 140 AGFKNNK|EI 0.065 . PcyM_1118100 157 GIYASWK|AQ 0.074 . PcyM_1118100 163 KAQAIGK|NA 0.074 . PcyM_1118100 166 AIGKNAK|VV 0.077 . PcyM_1118100 174 VQEFLEK|NY 0.059 . PcyM_1118100 191 CLLLAMK|AI 0.068 . PcyM_1118100 202 VVELSSK|NI 0.067 . PcyM_1118100 212 VALLTEK|EL 0.060 . PcyM_1118100 233 DVIDSER|TK 0.072 . PcyM_1118100 235 IDSERTK|KN 0.082 . PcyM_1118100 236 DSERTKK|NS 0.233 . ____________________________^_________________

  • Fasta :-

    >PcyM_1118100 ATGAGTTATGATAGAGCTATAACCGTGTTCAGTCCTGATGGACATTTGCTACAAGTAGAA CATGCCTTGGAGGCGGTTAAAAAAGGAGGCTGTGCAGTGGCAATAAAAAGTTCCAATTTC GCTGTTTTGGCAGTGGAAAAGAAGAACATTCCGAAATTGCAAAACCCAAGAACGACCGAG AAGTTAATCAAATTGGACGAACACAACTGTTTAGCCTTTGCAGGGCTGAATGCCGATGCG AGGGTTTTAGTCAATAAGACGCGACTGGAATGCCAAAGGTACTTTTTAAACATGGATGAA CCGGCGCCAGTTGACTATATTGCCAAGTACGTTGCGAAGGTTCAGCAAAAGTTTACACAT AGAGGAGGTGTGAGACCATTTGGAATAGCAACGTTGATCGCTGGATTTAAGAATAACAAA GAAATATGCATTTACCAAACGGAGCCCAGCGGTATTTATGCATCATGGAAAGCGCAGGCA ATTGGAAAAAACGCAAAAGTTGTGCAGGAATTTCTGGAAAAGAATTACCAAGAAAATATG GAGCAGAACGATTGCCTCCTCCTAGCTATGAAGGCCATATTTGAGGTCGTTGAATTGAGC AGCAAAAATATCGAAGTCGCCCTGCTGACCGAGAAGGAATTAAGTTTCATCGATGAACAG CAAATAAACGCATTGGTTGATGTAATCGACAGTGAACGAACGAAGAAGAATTCACAGAAT GAATAA
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  • Fasta :-

    MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPRTTE KLIKLDEHNCLAFAGLNADARVLVNKTRLECQRYFLNMDEPAPVDYIAKYVAKVQQKFTH RGGVRPFGIATLIAGFKNNKEICIYQTEPSGIYASWKAQAIGKNAKVVQEFLEKNYQENM EQNDCLLLAMKAIFEVVELSSKNIEVALLTEKELSFIDEQQINALVDVIDSERTKKNSQN E

  • title: active site
  • coordinates: G30,E46,K48,K61,K163
No Results
No Results
IDSitePeptideScoreMethod
PcyM_1118100215 SEKELSFIDE0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India