PcyM_1118200 | proteasome subunit alpha type-4, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_1118200OTHER0.9996610.0001020.000237
No Results

  • Fasta :-

    >PcyM_1118200 MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGIITNEGVILGADKVFISKLIDKAN NFEKIYKIDKHIFCGVAGLNADANILINQSRLYTQRYLYNYNDVQPVSQLVVQICDIKQS YTQYGGLRPYGVSFLIAGYDVKEGYQLYHTDPSGNYSGWFATAIGTNNLTASSILKQEWK KDMTLQDGLLLALKTLAKSTDSEVPKSEKIELAYLSNKDGELIQKYLTEKEIAELVKIYT EKYVKE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1118200.fa Sequence name : PcyM_1118200 Sequence length : 246 VALUES OF COMPUTED PARAMETERS Coef20 : 4.248 CoefTot : 0.254 ChDiff : -1 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.082 1.394 0.147 0.593 MesoH : -0.516 0.397 -0.379 0.242 MuHd_075 : 23.056 5.387 3.615 6.134 MuHd_095 : 14.841 4.720 3.134 2.857 MuHd_100 : 18.488 8.050 3.829 4.676 MuHd_105 : 19.679 11.334 4.048 6.197 Hmax_075 : -3.850 -2.975 -3.651 0.210 Hmax_095 : -1.312 -1.050 -2.054 0.411 Hmax_100 : 10.800 3.300 0.402 2.970 Hmax_105 : -1.283 -0.933 -1.926 2.065 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6929 0.3071 DFMC : 0.6551 0.3449
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 246 PcyM_1118200 MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGIITNEGVILGADKVFISKLIDKANNFEKIYKIDKHIFCGVAGLN 80 ADANILINQSRLYTQRYLYNYNDVQPVSQLVVQICDIKQSYTQYGGLRPYGVSFLIAGYDVKEGYQLYHTDPSGNYSGWF 160 ATAIGTNNLTASSILKQEWKKDMTLQDGLLLALKTLAKSTDSEVPKSEKIELAYLSNKDGELIQKYLTEKEIAELVKIYT 240 EKYVKE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1118200 3 ----MAR|RY 0.096 . PcyM_1118200 4 ---MARR|YD 0.146 . PcyM_1118200 8 ARRYDSR|TT 0.106 . PcyM_1118200 17 TFSPEGR|LY 0.096 . PcyM_1118200 49 VILGADK|VF 0.056 . PcyM_1118200 54 DKVFISK|LI 0.067 . PcyM_1118200 58 ISKLIDK|AN 0.060 . PcyM_1118200 64 KANNFEK|IY 0.072 . PcyM_1118200 67 NFEKIYK|ID 0.066 . PcyM_1118200 70 KIYKIDK|HI 0.071 . PcyM_1118200 91 ILINQSR|LY 0.083 . PcyM_1118200 96 SRLYTQR|YL 0.109 . PcyM_1118200 118 VQICDIK|QS 0.063 . PcyM_1118200 128 TQYGGLR|PY 0.103 . PcyM_1118200 142 IAGYDVK|EG 0.063 . PcyM_1118200 176 TASSILK|QE 0.076 . PcyM_1118200 180 ILKQEWK|KD 0.066 . PcyM_1118200 181 LKQEWKK|DM 0.119 . PcyM_1118200 194 GLLLALK|TL 0.059 . PcyM_1118200 198 ALKTLAK|ST 0.088 . PcyM_1118200 206 TDSEVPK|SE 0.110 . PcyM_1118200 209 EVPKSEK|IE 0.056 . PcyM_1118200 218 LAYLSNK|DG 0.073 . PcyM_1118200 225 DGELIQK|YL 0.068 . PcyM_1118200 230 QKYLTEK|EI 0.062 . PcyM_1118200 237 EIAELVK|IY 0.063 . PcyM_1118200 242 VKIYTEK|YV 0.089 . PcyM_1118200 245 YTEKYVK|E- 0.057 . ____________________________^_________________

  • Fasta :-

    >PcyM_1118200 ATGGCCAGGAGATATGACAGCAGGACGACTACCTTCTCCCCAGAGGGTAGATTATACCAA GTAGAATATGCCCTAGAAGCAATAAATAATGCCAGCATAACAATTGGCATAATAACAAAC GAGGGAGTAATTCTGGGGGCCGACAAAGTATTCATATCTAAGTTAATAGATAAGGCAAAT AATTTCGAAAAAATCTACAAAATTGACAAGCATATATTTTGTGGAGTGGCAGGATTAAAT GCTGATGCGAATATTTTAATAAATCAGTCCAGACTATACACACAAAGATATTTGTACAAC TACAATGATGTGCAGCCTGTGTCCCAATTAGTTGTTCAGATTTGTGATATTAAGCAGAGT TATACACAATATGGTGGGTTAAGACCCTATGGTGTCAGTTTTCTGATTGCAGGTTATGAT GTAAAGGAGGGATACCAACTGTACCACACAGACCCCAGTGGGAACTACTCTGGATGGTTT GCTACAGCCATTGGCACGAATAACTTGACGGCCAGTTCCATTCTCAAGCAGGAGTGGAAG AAGGACATGACTCTGCAGGATGGCCTATTGCTGGCCCTGAAAACGCTAGCCAAGAGCACA GATAGCGAGGTACCCAAAAGCGAAAAAATCGAGTTAGCCTACCTATCAAACAAAGACGGG GAGTTGATACAGAAATATTTAACAGAAAAGGAAATAGCAGAACTAGTTAAAATATACACA GAAAAGTATGTGAAAGAGTAA
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  • Fasta :-

    MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGIITNEGVILGADKVFISKLIDKAN NFEKIYKIDKHIFCGVAGLNADANILINQSRLYTQRYLYNYNDVQPVSQLVVQICDIKQS YTQYGGLRPYGVSFLIAGYDVKEGYQLYHTDPSGNYSGWFATAIGTNNLTASSILKQEWK KDMTLQDGLLLALKTLAKSTDSEVPKSEKIELAYLSNKDGELIQKYLTEKEIAELVKIYT EKYVKE

    No Results
  • title: active site
  • coordinates: S32,D48,V50,K64,T166
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_1118200207 SEVPKSEKIE0.991unspPcyM_1118200207 SEVPKSEKIE0.991unspPcyM_1118200207 SEVPKSEKIE0.991unspPcyM_1118200216 SLAYLSNKDG0.996unspPcyM_11182007 SRRYDSRTTT0.992unspPcyM_111820013 STTTFSPEGR0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India