PcyM_1122900 | E3 ubiquitin-protein ligase RNF5, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1122900OTHER0.9999990.0000010.000001
No Results

  • Fasta :-

    >PcyM_1122900 MNEKENEYDSLYDVIYDYDVNEEFLKGKDNNVQSAKPVLCDIKSKLTAKGESESFVDELS GSAHPNDATNDENEESVSSLSSIRLNDKNGDCAGGGEMESQLMPQKNTPDSAKENVISSD NMAHFEKREDLPFLKSNTQHNDSGNAEGSNSKAVEREEAKIVNPEKGGNHFPVGCSLSAE GGDASANSASTHVQRITSCESCNKEKDHHRRILSTDWQSTYSSHDVTVGKNYNNVVNRKN RLGENAPKEQGTIAERPQTDEVKDGETHHNNDVMIKDRGVKEKYKKLRFEDDIYNENGDE KTEAKNEQGPNQEEINKLEEKSAISKDNKNVEHSNGNDTSEEKNKTEKNAKKNTTSENDG TSTFECNICFDDVRDPVVTKCGHLFCWLCLSAWIKKNNDCPVCKAEVSRENVIPLYGRGK NSSEHKYSNVEEPRPTPKRKESVRRNNGYSNNLGLRASFGVWVNPFSFGMSYTNMSEEPY FYESGGGDNRTQAETYQAEAASSFFFFLGFFLSLYILFYSS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1122900.fa Sequence name : PcyM_1122900 Sequence length : 521 VALUES OF COMPUTED PARAMETERS Coef20 : 2.567 CoefTot : -0.134 ChDiff : -25 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.488 2.071 0.345 0.873 MesoH : -0.162 0.009 -0.354 0.241 MuHd_075 : 32.354 18.843 7.739 4.305 MuHd_095 : 24.900 16.517 6.875 4.578 MuHd_100 : 29.388 19.340 7.554 5.462 MuHd_105 : 28.821 19.188 7.032 5.573 Hmax_075 : -3.617 3.267 -3.174 1.680 Hmax_095 : -1.600 3.400 -2.424 2.420 Hmax_100 : -1.600 2.500 -2.424 2.420 Hmax_105 : -5.687 3.850 -3.289 2.205 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9863 0.0137 DFMC : 0.9779 0.0221
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 521 PcyM_1122900 MNEKENEYDSLYDVIYDYDVNEEFLKGKDNNVQSAKPVLCDIKSKLTAKGESESFVDELSGSAHPNDATNDENEESVSSL 80 SSIRLNDKNGDCAGGGEMESQLMPQKNTPDSAKENVISSDNMAHFEKREDLPFLKSNTQHNDSGNAEGSNSKAVEREEAK 160 IVNPEKGGNHFPVGCSLSAEGGDASANSASTHVQRITSCESCNKEKDHHRRILSTDWQSTYSSHDVTVGKNYNNVVNRKN 240 RLGENAPKEQGTIAERPQTDEVKDGETHHNNDVMIKDRGVKEKYKKLRFEDDIYNENGDEKTEAKNEQGPNQEEINKLEE 320 KSAISKDNKNVEHSNGNDTSEEKNKTEKNAKKNTTSENDGTSTFECNICFDDVRDPVVTKCGHLFCWLCLSAWIKKNNDC 400 PVCKAEVSRENVIPLYGRGKNSSEHKYSNVEEPRPTPKRKESVRRNNGYSNNLGLRASFGVWVNPFSFGMSYTNMSEEPY 480 FYESGGGDNRTQAETYQAEAASSFFFFLGFFLSLYILFYSS 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ......................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1122900 4 ---MNEK|EN 0.056 . PcyM_1122900 26 VNEEFLK|GK 0.065 . PcyM_1122900 28 EEFLKGK|DN 0.071 . PcyM_1122900 36 NNVQSAK|PV 0.078 . PcyM_1122900 43 PVLCDIK|SK 0.066 . PcyM_1122900 45 LCDIKSK|LT 0.075 . PcyM_1122900 49 KSKLTAK|GE 0.079 . PcyM_1122900 84 SSLSSIR|LN 0.098 . PcyM_1122900 88 SIRLNDK|NG 0.066 . PcyM_1122900 106 SQLMPQK|NT 0.060 . PcyM_1122900 113 NTPDSAK|EN 0.064 . PcyM_1122900 127 NMAHFEK|RE 0.057 . PcyM_1122900 128 MAHFEKR|ED 0.201 . PcyM_1122900 135 EDLPFLK|SN 0.077 . PcyM_1122900 152 AEGSNSK|AV 0.081 . PcyM_1122900 156 NSKAVER|EE 0.089 . PcyM_1122900 160 VEREEAK|IV 0.081 . PcyM_1122900 166 KIVNPEK|GG 0.066 . PcyM_1122900 195 ASTHVQR|IT 0.102 . PcyM_1122900 204 SCESCNK|EK 0.062 . PcyM_1122900 206 ESCNKEK|DH 0.074 . PcyM_1122900 210 KEKDHHR|RI 0.085 . PcyM_1122900 211 EKDHHRR|IL 0.206 . PcyM_1122900 230 HDVTVGK|NY 0.068 . PcyM_1122900 238 YNNVVNR|KN 0.130 . PcyM_1122900 239 NNVVNRK|NR 0.069 . PcyM_1122900 241 VVNRKNR|LG 0.280 . PcyM_1122900 248 LGENAPK|EQ 0.069 . PcyM_1122900 256 QGTIAER|PQ 0.078 . PcyM_1122900 263 PQTDEVK|DG 0.069 . PcyM_1122900 276 NNDVMIK|DR 0.085 . PcyM_1122900 278 DVMIKDR|GV 0.142 . PcyM_1122900 281 IKDRGVK|EK 0.123 . PcyM_1122900 283 DRGVKEK|YK 0.076 . PcyM_1122900 285 GVKEKYK|KL 0.067 . PcyM_1122900 286 VKEKYKK|LR 0.074 . PcyM_1122900 288 EKYKKLR|FE 0.158 . PcyM_1122900 301 NENGDEK|TE 0.064 . PcyM_1122900 305 DEKTEAK|NE 0.058 . PcyM_1122900 317 NQEEINK|LE 0.059 . PcyM_1122900 321 INKLEEK|SA 0.085 . PcyM_1122900 326 EKSAISK|DN 0.087 . PcyM_1122900 329 AISKDNK|NV 0.099 . PcyM_1122900 343 NDTSEEK|NK 0.054 . PcyM_1122900 345 TSEEKNK|TE 0.068 . PcyM_1122900 348 EKNKTEK|NA 0.079 . PcyM_1122900 351 KTEKNAK|KN 0.074 . PcyM_1122900 352 TEKNAKK|NT 0.126 . PcyM_1122900 374 ICFDDVR|DP 0.077 . PcyM_1122900 380 RDPVVTK|CG 0.057 . PcyM_1122900 395 CLSAWIK|KN 0.071 . PcyM_1122900 396 LSAWIKK|NN 0.090 . PcyM_1122900 404 NDCPVCK|AE 0.062 . PcyM_1122900 409 CKAEVSR|EN 0.090 . PcyM_1122900 418 VIPLYGR|GK 0.086 . PcyM_1122900 420 PLYGRGK|NS 0.064 . PcyM_1122900 426 KNSSEHK|YS 0.092 . PcyM_1122900 434 SNVEEPR|PT 0.092 . PcyM_1122900 438 EPRPTPK|RK 0.072 . PcyM_1122900 439 PRPTPKR|KE 0.171 . PcyM_1122900 440 RPTPKRK|ES 0.094 . PcyM_1122900 444 KRKESVR|RN 0.095 . PcyM_1122900 445 RKESVRR|NN 0.196 . PcyM_1122900 456 SNNLGLR|AS 0.096 . PcyM_1122900 490 SGGGDNR|TQ 0.069 . ____________________________^_________________

  • Fasta :-

    >PcyM_1122900 ATGAATGAAAAAGAAAACGAATATGATTCGCTATACGATGTAATATACGATTATGACGTT AACGAAGAATTCCTGAAGGGGAAGGACAACAACGTTCAGTCTGCAAAACCGGTTCTCTGT GACATAAAAAGTAAGTTAACTGCTAAGGGAGAAAGCGAAAGCTTTGTGGATGAGCTTTCG GGAAGTGCCCACCCAAATGACGCAACAAATGATGAAAACGAAGAAAGCGTCTCATCATTA TCGTCCATACGGTTAAATGATAAAAATGGCGATTGCGCAGGGGGGGGTGAAATGGAGAGC CAGCTAATGCCTCAGAAGAACACCCCAGATAGTGCTAAAGAGAACGTAATAAGCTCCGAT AACATGGCCCATTTTGAAAAAAGGGAAGATCTGCCATTCTTAAAAAGTAACACACAGCAT AATGATAGTGGTAACGCTGAAGGTAGCAATTCTAAAGCGGTCGAAAGAGAGGAGGCCAAA ATTGTGAACCCAGAAAAAGGGGGAAACCATTTCCCAGTTGGTTGTTCATTATCAGCCGAG GGAGGAGACGCATCTGCAAATAGCGCCTCTACACATGTACAGCGAATAACCAGCTGCGAA AGCTGCAATAAAGAAAAGGACCACCACAGGAGGATACTATCAACCGACTGGCAGAGTACA TACAGCTCGCACGACGTTACTGTAGGCAAAAATTATAACAACGTAGTGAACCGTAAAAAC AGATTAGGAGAAAATGCCCCCAAGGAACAGGGAACCATAGCGGAGCGGCCCCAGACCGAT GAGGTAAAAGACGGAGAAACACATCACAATAACGACGTTATGATAAAAGATCGGGGGGTA AAGGAAAAATACAAAAAACTTAGATTCGAAGATGATATATATAATGAAAATGGGGATGAA AAAACTGAGGCAAAAAATGAACAAGGCCCAAATCAGGAAGAAATAAACAAATTGGAAGAA AAAAGTGCCATTAGTAAAGACAACAAAAATGTAGAACACAGTAATGGTAATGACACCTCG GAAGAAAAAAACAAAACGGAAAAAAATGCTAAGAAAAACACAACATCAGAAAATGATGGC ACAAGTACATTCGAATGTAACATTTGTTTTGATGATGTGAGGGACCCAGTGGTAACAAAA TGTGGCCATCTGTTCTGCTGGTTATGTCTCTCCGCTTGGATTAAAAAAAATAATGACTGC CCTGTCTGCAAAGCTGAAGTTTCAAGAGAAAATGTAATACCTCTGTACGGAAGGGGCAAA AATAGCAGCGAACATAAATATTCGAATGTGGAAGAACCTAGACCCACACCGAAAAGGAAA GAAAGTGTTAGGAGAAATAATGGCTATTCTAACAATTTAGGGCTAAGGGCTTCCTTTGGC GTTTGGGTGAACCCTTTTTCCTTTGGAATGTCCTACACCAACATGTCAGAAGAGCCCTAC TTTTATGAAAGCGGTGGTGGTGACAACAGAACCCAGGCAGAAACGTATCAAGCGGAAGCC GCATCTTCCTTTTTCTTTTTCTTGGGTTTTTTTCTGTCCCTCTATATTTTGTTCTACTCT TCCTAG
  • Download Fasta

  • Fasta :-

    MNEKENEYDSLYDVIYDYDVNEEFLKGKDNNVQSAKPVLCDIKSKLTAKGESESFVDELS GSAHPNDATNDENEESVSSLSSIRLNDKNGDCAGGGEMESQLMPQKNTPDSAKENVISSD NMAHFEKREDLPFLKSNTQHNDSGNAEGSNSKAVEREEAKIVNPEKGGNHFPVGCSLSAE GGDASANSASTHVQRITSCESCNKEKDHHRRILSTDWQSTYSSHDVTVGKNYNNVVNRKN RLGENAPKEQGTIAERPQTDEVKDGETHHNNDVMIKDRGVKEKYKKLRFEDDIYNENGDE KTEAKNEQGPNQEEINKLEEKSAISKDNKNVEHSNGNDTSEEKNKTEKNAKKNTTSENDG TSTFECNICFDDVRDPVVTKCGHLFCWLCLSAWIKKNNDCPVCKAEVSRENVIPLYGRGK NSSEHKYSNVEEPRPTPKRKESVRRNNGYSNNLGLRASFGVWVNPFSFGMSYTNMSEEPY FYESGGGDNRTQAETYQAEAASSFFFFLGFFLSLYILFYSS

  • title: Zn binding site
  • coordinates: C366,C369,C381,H383,C386,C389,C400,C403
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_1122900442 SKRKESVRRN0.996unspPcyM_1122900442 SKRKESVRRN0.996unspPcyM_1122900442 SKRKESVRRN0.996unspPcyM_1122900111 SNTPDSAKEN0.998unspPcyM_1122900436 TEPRPTPKRK0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India