PcyM_1132100 | rhomboid protease ROM10, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1132100OTHER0.9999570.0000120.000031
No Results

  • Fasta :-

    >PcyM_1132100 MNIFSNSSRSNKSKKSRDANMLTCKYTRSFNKTFKKDITFIQILFPSLTVKSITTSFFVL LFFIFFFLNVCNFDPQAPLYLSETVLKRYGMSRNSVTNNYQYYKLLTATFFHSNVWNLII NAYYFMNIGIIVEKSYGKAQYMAIMLLSALCGNFLLCATSNCGEIHMGISTILSGFMGLF LQEIVERYKNLKDRWSVIGNYVFSVLSLYLTISMFPFNGNIVGNLGGIFGGFCYPYLTKK DTFHGQEKKVKLTLVVLMILLLSSTLISLIVAKC
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1132100.fa Sequence name : PcyM_1132100 Sequence length : 274 VALUES OF COMPUTED PARAMETERS Coef20 : 4.346 CoefTot : -0.485 ChDiff : 16 ZoneTo : 73 KR : 11 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.747 2.806 0.501 0.896 MesoH : 0.715 0.957 -0.049 0.448 MuHd_075 : 38.782 24.811 10.467 7.553 MuHd_095 : 46.713 22.293 11.706 10.372 MuHd_100 : 46.562 24.887 12.294 10.708 MuHd_105 : 46.389 23.373 11.831 9.665 Hmax_075 : 18.200 21.500 3.993 6.070 Hmax_095 : 13.500 8.500 1.192 3.745 Hmax_100 : 13.500 9.100 0.024 4.510 Hmax_105 : 10.400 25.900 0.646 4.725 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6556 0.3444 DFMC : 0.2429 0.7571 This protein is probably imported in chloroplast. f(Ser) = 0.1370 f(Arg) = 0.0411 CMi = 1.07411 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 274 PcyM_1132100 MNIFSNSSRSNKSKKSRDANMLTCKYTRSFNKTFKKDITFIQILFPSLTVKSITTSFFVLLFFIFFFLNVCNFDPQAPLY 80 LSETVLKRYGMSRNSVTNNYQYYKLLTATFFHSNVWNLIINAYYFMNIGIIVEKSYGKAQYMAIMLLSALCGNFLLCATS 160 NCGEIHMGISTILSGFMGLFLQEIVERYKNLKDRWSVIGNYVFSVLSLYLTISMFPFNGNIVGNLGGIFGGFCYPYLTKK 240 DTFHGQEKKVKLTLVVLMILLLSSTLISLIVAKC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1132100 9 IFSNSSR|SN 0.134 . PcyM_1132100 12 NSSRSNK|SK 0.258 . PcyM_1132100 14 SRSNKSK|KS 0.107 . PcyM_1132100 15 RSNKSKK|SR 0.338 . PcyM_1132100 17 NKSKKSR|DA 0.215 . PcyM_1132100 25 ANMLTCK|YT 0.073 . PcyM_1132100 28 LTCKYTR|SF 0.119 . PcyM_1132100 32 YTRSFNK|TF 0.064 . PcyM_1132100 35 SFNKTFK|KD 0.068 . PcyM_1132100 36 FNKTFKK|DI 0.161 . PcyM_1132100 51 FPSLTVK|SI 0.127 . PcyM_1132100 87 LSETVLK|RY 0.071 . PcyM_1132100 88 SETVLKR|YG 0.127 . PcyM_1132100 93 KRYGMSR|NS 0.094 . PcyM_1132100 104 NNYQYYK|LL 0.068 . PcyM_1132100 134 IGIIVEK|SY 0.111 . PcyM_1132100 138 VEKSYGK|AQ 0.063 . PcyM_1132100 187 LQEIVER|YK 0.090 . PcyM_1132100 189 EIVERYK|NL 0.057 . PcyM_1132100 192 ERYKNLK|DR 0.076 . PcyM_1132100 194 YKNLKDR|WS 0.125 . PcyM_1132100 239 CYPYLTK|KD 0.054 . PcyM_1132100 240 YPYLTKK|DT 0.169 . PcyM_1132100 248 TFHGQEK|KV 0.076 . PcyM_1132100 249 FHGQEKK|VK 0.077 . PcyM_1132100 251 GQEKKVK|LT 0.078 . PcyM_1132100 273 ISLIVAK|C- 0.070 . ____________________________^_________________

  • Fasta :-

    >PcyM_1132100 ATGAATATCTTCTCTAACAGCTCCAGGTCCAACAAGTCCAAAAAATCCAGAGATGCTAAC ATGCTAACGTGTAAATATACTAGGAGCTTTAACAAGACTTTCAAGAAGGACATTACATTT ATTCAGATTTTGTTTCCATCCTTGACTGTGAAGAGTATCACGACCTCCTTTTTCGTGCTC CTATTTTTTATTTTCTTCTTTTTGAATGTGTGCAACTTTGACCCGCAGGCCCCGCTCTAT CTGAGCGAAACTGTGCTGAAACGATATGGCATGAGCAGAAACTCCGTTACGAACAACTAC CAGTATTACAAATTATTGACGGCCACTTTTTTCCACTCCAACGTCTGGAACTTAATCATT AATGCCTACTACTTCATGAACATAGGGATCATCGTCGAGAAGAGCTACGGGAAGGCACAA TACATGGCGATAATGCTTCTAAGTGCTCTATGTGGGAACTTCCTCCTCTGTGCTACTTCC AATTGCGGAGAGATCCACATGGGAATCAGCACCATTCTGTCCGGATTCATGGGCCTCTTT CTGCAGGAAATTGTTGAGCGGTACAAAAATCTGAAGGACAGATGGAGCGTTATTGGGAAC TACGTATTTTCAGTGCTGTCCCTTTATCTGACCATATCGATGTTTCCCTTTAATGGAAAC ATCGTGGGAAACCTGGGGGGAATTTTCGGTGGCTTCTGCTATCCGTACCTCACTAAAAAG GACACCTTCCACGGGCAGGAGAAGAAAGTGAAACTTACCCTCGTCGTTTTGATGATTCTA CTCCTGAGTTCAACTCTGATCAGTTTGATCGTGGCCAAGTGTTAG
  • Download Fasta

  • Fasta :-

    MNIFSNSSRSNKSKKSRDANMLTCKYTRSFNKTFKKDITFIQILFPSLTVKSITTSFFVL LFFIFFFLNVCNFDPQAPLYLSETVLKRYGMSRNSVTNNYQYYKLLTATFFHSNVWNLII NAYYFMNIGIIVEKSYGKAQYMAIMLLSALCGNFLLCATSNCGEIHMGISTILSGFMGLF LQEIVERYKNLKDRWSVIGNYVFSVLSLYLTISMFPFNGNIVGNLGGIFGGFCYPYLTKK DTFHGQEKKVKLTLVVLMILLLSSTLISLIVAKC

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_113210095 SMSRNSVTNN0.994unspPcyM_113210095 SMSRNSVTNN0.994unspPcyM_113210095 SMSRNSVTNN0.994unspPcyM_1132100238 TYPYLTKKDT0.991unspPcyM_113210010 SNSSRSNKSK0.995unspPcyM_113210013 SRSNKSKKSR0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India