PcyM_1211200 | rhomboid protease ROM6, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1211200OTHER0.9315740.0000260.068400
No Results

  • Fasta :-

    >PcyM_1211200 MFNAGRYFRASYYKKKNIFHVKGSRQFHGFVKSRRVQTNALKRKDRIKRGKFLQLKEKLQ LIIFSSVYFFACDYVYHVYVLSDNASRTSSRTTSRTTSRTANRASNHSGEDKGNDPKCKD EHAGGKGGVGTTMMEYIKWMNIFSSAQGKDDQNLKQQDGECRRKNDGNKMEAKKGSHKKD HLSSDRGDVKICSVCEEDPYEIKINRVKRSSGKEETNQTGKPNQYGQSSYAANQKDQLPS QDRSGSGRSHPNNGNPQRNSIGGEEKKMKDLIVSNFQRNDLFNGCNLFLFANGVVFLCWR LSEIVGNKKFFHFMCRNFICSYENIRRKYYHTIFTATISHITLPHFLFNMWAFHTISNTL LSPEIKENKTNYYFFFNYKSSVLEKKVTDRDIMKVYVLSSIVSTVPYIFLHKGNQLLGAS GAVMGLVYILATVKPNEVFVSLFPLPYLKMTSLQLCHLSILTNFVFLFCRRNHFNIAWLA HLFGLMGGALYNFYQRRKNNNKNYYPFIELSLKNGPIDYLNSYLDFVDFVKCLQLQIRIF FSLDPRTMQNMNRKINSIKNMQSQRRMKYHMLKVKNLEAMSR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1211200.fa Sequence name : PcyM_1211200 Sequence length : 582 VALUES OF COMPUTED PARAMETERS Coef20 : 3.892 CoefTot : -1.511 ChDiff : 46 ZoneTo : 44 KR : 13 DE : 0 CleavSite : 37 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.871 1.871 0.343 0.704 MesoH : 0.725 1.052 -0.066 0.450 MuHd_075 : 32.009 27.164 9.151 8.559 MuHd_095 : 28.099 15.174 7.617 6.079 MuHd_100 : 31.647 19.305 8.307 7.086 MuHd_105 : 41.393 20.843 11.078 8.414 Hmax_075 : 5.250 15.050 0.012 4.223 Hmax_095 : 1.500 5.100 -2.398 3.280 Hmax_100 : 3.200 5.900 -2.172 3.000 Hmax_105 : 6.300 6.533 -0.418 2.765 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0091 0.9909 DFMC : 0.0133 0.9867 This protein is probably imported in mitochondria. f(Ser) = 0.0682 f(Arg) = 0.1364 CMi = 0.26132 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 582 PcyM_1211200 MFNAGRYFRASYYKKKNIFHVKGSRQFHGFVKSRRVQTNALKRKDRIKRGKFLQLKEKLQLIIFSSVYFFACDYVYHVYV 80 LSDNASRTSSRTTSRTTSRTANRASNHSGEDKGNDPKCKDEHAGGKGGVGTTMMEYIKWMNIFSSAQGKDDQNLKQQDGE 160 CRRKNDGNKMEAKKGSHKKDHLSSDRGDVKICSVCEEDPYEIKINRVKRSSGKEETNQTGKPNQYGQSSYAANQKDQLPS 240 QDRSGSGRSHPNNGNPQRNSIGGEEKKMKDLIVSNFQRNDLFNGCNLFLFANGVVFLCWRLSEIVGNKKFFHFMCRNFIC 320 SYENIRRKYYHTIFTATISHITLPHFLFNMWAFHTISNTLLSPEIKENKTNYYFFFNYKSSVLEKKVTDRDIMKVYVLSS 400 IVSTVPYIFLHKGNQLLGASGAVMGLVYILATVKPNEVFVSLFPLPYLKMTSLQLCHLSILTNFVFLFCRRNHFNIAWLA 480 HLFGLMGGALYNFYQRRKNNNKNYYPFIELSLKNGPIDYLNSYLDFVDFVKCLQLQIRIFFSLDPRTMQNMNRKINSIKN 560 MQSQRRMKYHMLKVKNLEAMSR 640 ................................................P............................... 80 ................................................................................ 160 ................................................P............................... 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ...................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ PcyM_1211200 6 -MFNAGR|YF 0.087 . PcyM_1211200 9 NAGRYFR|AS 0.265 . PcyM_1211200 14 FRASYYK|KK 0.062 . PcyM_1211200 15 RASYYKK|KN 0.116 . PcyM_1211200 16 ASYYKKK|NI 0.147 . PcyM_1211200 22 KNIFHVK|GS 0.077 . PcyM_1211200 25 FHVKGSR|QF 0.082 . PcyM_1211200 32 QFHGFVK|SR 0.086 . PcyM_1211200 34 HGFVKSR|RV 0.109 . PcyM_1211200 35 GFVKSRR|VQ 0.133 . PcyM_1211200 42 VQTNALK|RK 0.058 . PcyM_1211200 43 QTNALKR|KD 0.167 . PcyM_1211200 44 TNALKRK|DR 0.127 . PcyM_1211200 46 ALKRKDR|IK 0.346 . PcyM_1211200 48 KRKDRIK|RG 0.060 . PcyM_1211200 49 RKDRIKR|GK 0.621 *ProP* PcyM_1211200 51 DRIKRGK|FL 0.085 . PcyM_1211200 56 GKFLQLK|EK 0.058 . PcyM_1211200 58 FLQLKEK|LQ 0.062 . PcyM_1211200 87 LSDNASR|TS 0.077 . PcyM_1211200 91 ASRTSSR|TT 0.109 . PcyM_1211200 95 SSRTTSR|TT 0.104 . PcyM_1211200 99 TSRTTSR|TA 0.119 . PcyM_1211200 103 TSRTANR|AS 0.130 . PcyM_1211200 112 NHSGEDK|GN 0.084 . PcyM_1211200 117 DKGNDPK|CK 0.067 . PcyM_1211200 119 GNDPKCK|DE 0.110 . PcyM_1211200 126 DEHAGGK|GG 0.064 . PcyM_1211200 138 TMMEYIK|WM 0.059 . PcyM_1211200 149 FSSAQGK|DD 0.080 . PcyM_1211200 155 KDDQNLK|QQ 0.059 . PcyM_1211200 162 QQDGECR|RK 0.097 . PcyM_1211200 163 QDGECRR|KN 0.131 . PcyM_1211200 164 DGECRRK|ND 0.084 . PcyM_1211200 169 RKNDGNK|ME 0.072 . PcyM_1211200 173 GNKMEAK|KG 0.080 . PcyM_1211200 174 NKMEAKK|GS 0.149 . PcyM_1211200 178 AKKGSHK|KD 0.060 . PcyM_1211200 179 KKGSHKK|DH 0.140 . PcyM_1211200 186 DHLSSDR|GD 0.074 . PcyM_1211200 190 SDRGDVK|IC 0.074 . PcyM_1211200 203 EDPYEIK|IN 0.060 . PcyM_1211200 206 YEIKINR|VK 0.080 . PcyM_1211200 208 IKINRVK|RS 0.075 . PcyM_1211200 209 KINRVKR|SS 0.897 *ProP* PcyM_1211200 213 VKRSSGK|EE 0.066 . PcyM_1211200 221 ETNQTGK|PN 0.068 . PcyM_1211200 235 SYAANQK|DQ 0.072 . PcyM_1211200 243 QLPSQDR|SG 0.097 . PcyM_1211200 248 DRSGSGR|SH 0.187 . PcyM_1211200 258 NNGNPQR|NS 0.124 . PcyM_1211200 266 SIGGEEK|KM 0.061 . PcyM_1211200 267 IGGEEKK|MK 0.103 . PcyM_1211200 269 GEEKKMK|DL 0.096 . PcyM_1211200 278 IVSNFQR|ND 0.088 . PcyM_1211200 300 VVFLCWR|LS 0.080 . PcyM_1211200 308 SEIVGNK|KF 0.058 . PcyM_1211200 309 EIVGNKK|FF 0.089 . PcyM_1211200 316 FFHFMCR|NF 0.085 . PcyM_1211200 326 CSYENIR|RK 0.067 . PcyM_1211200 327 SYENIRR|KY 0.120 . PcyM_1211200 328 YENIRRK|YY 0.131 . PcyM_1211200 366 LLSPEIK|EN 0.068 . PcyM_1211200 369 PEIKENK|TN 0.059 . PcyM_1211200 379 YFFFNYK|SS 0.064 . PcyM_1211200 385 KSSVLEK|KV 0.100 . PcyM_1211200 386 SSVLEKK|VT 0.112 . PcyM_1211200 390 EKKVTDR|DI 0.156 . PcyM_1211200 394 TDRDIMK|VY 0.058 . PcyM_1211200 412 PYIFLHK|GN 0.059 . PcyM_1211200 434 YILATVK|PN 0.058 . PcyM_1211200 449 FPLPYLK|MT 0.067 . PcyM_1211200 470 FVFLFCR|RN 0.076 . PcyM_1211200 471 VFLFCRR|NH 0.089 . PcyM_1211200 496 LYNFYQR|RK 0.073 . PcyM_1211200 497 YNFYQRR|KN 0.126 . PcyM_1211200 498 NFYQRRK|NN 0.071 . PcyM_1211200 502 RRKNNNK|NY 0.070 . PcyM_1211200 513 FIELSLK|NG 0.053 . PcyM_1211200 531 DFVDFVK|CL 0.061 . PcyM_1211200 538 CLQLQIR|IF 0.087 . PcyM_1211200 546 FFSLDPR|TM 0.075 . PcyM_1211200 553 TMQNMNR|KI 0.121 . PcyM_1211200 554 MQNMNRK|IN 0.120 . PcyM_1211200 559 RKINSIK|NM 0.073 . PcyM_1211200 565 KNMQSQR|RM 0.080 . PcyM_1211200 566 NMQSQRR|MK 0.171 . PcyM_1211200 568 QSQRRMK|YH 0.159 . PcyM_1211200 573 MKYHMLK|VK 0.062 . PcyM_1211200 575 YHMLKVK|NL 0.071 . PcyM_1211200 582 NLEAMSR|-- 0.091 . ____________________________^_________________

  • Fasta :-

    >PcyM_1211200 ATGTTCAATGCTGGGAGATACTTCAGAGCTAGCTACTACAAGAAGAAGAACATTTTTCAT GTAAAGGGGAGCAGACAGTTTCATGGATTCGTCAAAAGTAGGAGGGTACAGACAAATGCC CTCAAGAGAAAAGATAGAATAAAAAGGGGGAAGTTTTTACAATTGAAGGAAAAGCTGCAG CTCATCATTTTCAGCTCCGTGTACTTTTTTGCGTGCGACTATGTTTACCACGTGTATGTG CTGAGCGACAACGCCAGCAGAACTAGCAGCAGAACTACCAGCAGAACTACCAGCAGAACC GCCAACCGTGCCTCCAACCACAGCGGAGAAGACAAAGGGAATGACCCAAAATGCAAAGAC GAGCACGCCGGTGGCAAGGGGGGGGTCGGCACAACCATGATGGAGTATATCAAATGGATG AACATATTTTCCAGTGCTCAGGGGAAGGATGACCAAAATTTAAAGCAACAGGACGGTGAA TGTAGGAGAAAAAATGACGGCAACAAAATGGAGGCTAAAAAAGGTTCCCATAAAAAGGAT CATCTCTCCAGCGACAGAGGTGACGTAAAAATTTGCAGCGTATGTGAGGAAGACCCATAC GAAATAAAGATAAATCGCGTTAAGCGGAGTAGCGGGAAGGAGGAAACCAATCAAACGGGG AAGCCTAACCAATATGGCCAATCTTCCTATGCCGCAAATCAGAAGGACCAACTGCCTAGC CAAGACCGGAGTGGCAGTGGAAGAAGCCACCCTAATAACGGCAACCCCCAGCGAAACAGT ATCGGAGGAGAAGAAAAAAAGATGAAAGATCTAATCGTGAGTAACTTCCAAAGGAATGAT CTTTTCAATGGATGTAACCTATTTCTGTTCGCCAACGGGGTTGTGTTCTTATGTTGGCGT TTAAGCGAAATCGTAGGAAATAAAAAATTTTTCCACTTCATGTGCAGGAACTTTATCTGT TCATATGAAAATATTAGAAGAAAATATTACCACACAATTTTTACAGCCACCATTAGCCAT ATCACTCTTCCCCATTTTTTATTTAACATGTGGGCATTTCATACTATAAGTAACACCCTG TTGAGTCCAGAAATTAAAGAGAACAAAACAAATTATTATTTTTTTTTTAATTATAAGTCC AGCGTTTTGGAAAAAAAAGTCACAGACAGGGATATCATGAAAGTATATGTCTTATCTTCC ATCGTTTCGACTGTCCCGTATATTTTTTTACACAAGGGAAATCAACTACTAGGAGCATCT GGAGCTGTTATGGGTCTTGTATACATTTTGGCTACAGTTAAACCAAATGAAGTCTTCGTC TCCTTGTTCCCTCTACCATACTTAAAGATGACCTCCCTACAGCTATGCCACCTATCCATT TTAACCAATTTTGTATTTCTTTTTTGTAGAAGAAATCATTTCAACATTGCATGGCTAGCA CATTTATTTGGTTTAATGGGAGGAGCATTGTATAATTTTTATCAGAGGAGAAAAAACAAT AATAAGAATTATTACCCCTTTATTGAATTGTCCCTAAAAAATGGACCTATTGATTATCTC AATTCTTATCTAGACTTTGTAGATTTTGTCAAATGTCTACAGCTGCAAATTCGGATTTTC TTTTCCCTCGATCCACGCACCATGCAAAACATGAACAGGAAAATCAACTCCATTAAAAAT ATGCAGTCACAGAGGCGCATGAAGTACCACATGTTGAAGGTTAAAAATTTGGAGGCCATG TCTAGGTGA
  • Download Fasta

  • Fasta :-

    MFNAGRYFRASYYKKKNIFHVKGSRQFHGFVKSRRVQTNALKRKDRIKRGKFLQLKEKLQ LIIFSSVYFFACDYVYHVYVLSDNASRTSSRTTSRTTSRTANRASNHSGEDKGNDPKCKD EHAGGKGGVGTTMMEYIKWMNIFSSAQGKDDQNLKQQDGECRRKNDGNKMEAKKGSHKKD HLSSDRGDVKICSVCEEDPYEIKINRVKRSSGKEETNQTGKPNQYGQSSYAANQKDQLPS QDRSGSGRSHPNNGNPQRNSIGGEEKKMKDLIVSNFQRNDLFNGCNLFLFANGVVFLCWR LSEIVGNKKFFHFMCRNFICSYENIRRKYYHTIFTATISHITLPHFLFNMWAFHTISNTL LSPEIKENKTNYYFFFNYKSSVLEKKVTDRDIMKVYVLSSIVSTVPYIFLHKGNQLLGAS GAVMGLVYILATVKPNEVFVSLFPLPYLKMTSLQLCHLSILTNFVFLFCRRNHFNIAWLA HLFGLMGGALYNFYQRRKNNNKNYYPFIELSLKNGPIDYLNSYLDFVDFVKCLQLQIRIF FSLDPRTMQNMNRKINSIKNMQSQRRMKYHMLKVKNLEAMSR

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_121120093 TSSRTTSRTT0.993unspPcyM_121120093 TSSRTTSRTT0.993unspPcyM_121120093 TSSRTTSRTT0.993unspPcyM_121120094 SSRTTSRTTS0.993unspPcyM_121120098 SSRTTSRTAN0.996unspPcyM_1211200108 SASNHSGEDK0.998unspPcyM_1211200211 SVKRSSGKEE0.998unspPcyM_1211200246 SDRSGSGRSH0.994unspPcyM_121120011 SYFRASYYKK0.994unspPcyM_121120089 SASRTSSRTT0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India