PcyM_1247900 | ATP-dependent zinc metalloprotease FTSH, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_1247900OTHER0.7885260.0005110.210964
No Results

  • Fasta :-

    >PcyM_1247900 MLLLRNVVVVHLKRSHMLYVGNLANVECILNNKRCFTLLKNERLDRLKREIRYKPNDNFL ILQFYKEANVHNPNEVIKHYESNNNIKNESITKEYIKALVYTNKLKYTNLDNIKYDSDPM LYRRLVDESSHSNDVNNDRSSVYDTGNLNADSGYANMAQSSHRIEYGDKKKGVHSEIYSL QIDPKKPLKVSVVDGSKKGMWGLLKSTIGFLILVAAASVYLEGVSQNVQKGIGVVNKKII PVENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIA RAIAGEANVPFLQASGSEFEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSN RDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDIK GRYEILKMYSSKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKAVDMNSI EQAFDRVVVGLQRKSPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLGVT WKIPISDKYSQKIRDVQSEIDILMGGLVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVMN YGVGINEENISMFLQDKKNISEEMKIKIDKSIQRILLDSYNRAKKVLNQHIDELHRVASA LVEYETLTSDEIKLAMQGKHDQIRKNRELKQKEFNLKDSRIS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1247900.fa Sequence name : PcyM_1247900 Sequence length : 702 VALUES OF COMPUTED PARAMETERS Coef20 : 4.577 CoefTot : -0.505 ChDiff : 13 ZoneTo : 41 KR : 6 DE : 1 CleavSite : 44 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.600 2.047 0.269 0.751 MesoH : -0.572 0.501 -0.397 0.245 MuHd_075 : 27.939 22.928 8.278 7.199 MuHd_095 : 21.578 16.216 5.561 5.541 MuHd_100 : 18.120 15.795 6.748 4.831 MuHd_105 : 25.630 15.682 8.189 5.431 Hmax_075 : 9.625 18.900 4.555 5.022 Hmax_095 : 9.887 15.313 1.060 5.232 Hmax_100 : 4.000 15.700 1.657 5.360 Hmax_105 : 4.000 9.683 1.657 3.780 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2400 0.7600 DFMC : 0.4413 0.5587 This protein is probably imported in mitochondria. f(Ser) = 0.0244 f(Arg) = 0.0732 CMi = 0.14144 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 702 PcyM_1247900 MLLLRNVVVVHLKRSHMLYVGNLANVECILNNKRCFTLLKNERLDRLKREIRYKPNDNFLILQFYKEANVHNPNEVIKHY 80 ESNNNIKNESITKEYIKALVYTNKLKYTNLDNIKYDSDPMLYRRLVDESSHSNDVNNDRSSVYDTGNLNADSGYANMAQS 160 SHRIEYGDKKKGVHSEIYSLQIDPKKPLKVSVVDGSKKGMWGLLKSTIGFLILVAAASVYLEGVSQNVQKGIGVVNKKII 240 PVENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAIAGEANVPFLQASGSEFE 320 EMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSNRDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDK 400 ALVRPGRLDKTIVVPLPDIKGRYEILKMYSSKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKAVDMNSI 480 EQAFDRVVVGLQRKSPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLGVTWKIPISDKYSQKIRDVQSEI 560 DILMGGLVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVMNYGVGINEENISMFLQDKKNISEEMKIKIDKSIQRILLDSY 640 NRAKKVLNQHIDELHRVASALVEYETLTSDEIKLAMQGKHDQIRKNRELKQKEFNLKDSRIS 720 ................................................P............................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................P....................................... 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .............................................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ PcyM_1247900 5 --MLLLR|NV 0.081 . PcyM_1247900 13 VVVVHLK|RS 0.057 . PcyM_1247900 14 VVVHLKR|SH 0.186 . PcyM_1247900 33 ECILNNK|RC 0.057 . PcyM_1247900 34 CILNNKR|CF 0.097 . PcyM_1247900 40 RCFTLLK|NE 0.053 . PcyM_1247900 43 TLLKNER|LD 0.073 . PcyM_1247900 46 KNERLDR|LK 0.186 . PcyM_1247900 48 ERLDRLK|RE 0.057 . PcyM_1247900 49 RLDRLKR|EI 0.516 *ProP* PcyM_1247900 52 RLKREIR|YK 0.176 . PcyM_1247900 54 KREIRYK|PN 0.074 . PcyM_1247900 66 LILQFYK|EA 0.069 . PcyM_1247900 78 NPNEVIK|HY 0.082 . PcyM_1247900 87 ESNNNIK|NE 0.069 . PcyM_1247900 93 KNESITK|EY 0.066 . PcyM_1247900 97 ITKEYIK|AL 0.059 . PcyM_1247900 104 ALVYTNK|LK 0.070 . PcyM_1247900 106 VYTNKLK|YT 0.060 . PcyM_1247900 114 TNLDNIK|YD 0.064 . PcyM_1247900 123 SDPMLYR|RL 0.080 . PcyM_1247900 124 DPMLYRR|LV 0.255 . PcyM_1247900 139 NDVNNDR|SS 0.096 . PcyM_1247900 163 MAQSSHR|IE 0.082 . PcyM_1247900 169 RIEYGDK|KK 0.061 . PcyM_1247900 170 IEYGDKK|KG 0.085 . PcyM_1247900 171 EYGDKKK|GV 0.186 . PcyM_1247900 185 SLQIDPK|KP 0.061 . PcyM_1247900 186 LQIDPKK|PL 0.097 . PcyM_1247900 189 DPKKPLK|VS 0.057 . PcyM_1247900 197 SVVDGSK|KG 0.057 . PcyM_1247900 198 VVDGSKK|GM 0.101 . PcyM_1247900 205 GMWGLLK|ST 0.078 . PcyM_1247900 230 VSQNVQK|GI 0.101 . PcyM_1247900 237 GIGVVNK|KI 0.093 . PcyM_1247900 238 IGVVNKK|II 0.091 . PcyM_1247900 246 IPVENVK|VT 0.064 . PcyM_1247900 253 VTFADVK|GC 0.065 . PcyM_1247900 259 KGCDEVK|QE 0.058 . PcyM_1247900 270 EIIDYLK|NS 0.056 . PcyM_1247900 274 YLKNSDK|FT 0.072 . PcyM_1247900 277 NSDKFTK|IG 0.065 . PcyM_1247900 281 FTKIGAK|LP 0.060 . PcyM_1247900 284 IGAKLPK|GI 0.075 . PcyM_1247900 296 GEPGTGK|TL 0.058 . PcyM_1247900 301 GKTLIAR|AI 0.097 . PcyM_1247900 329 FVGVGAR|RI 0.096 . PcyM_1247900 330 VGVGARR|IR 0.094 . PcyM_1247900 332 VGARRIR|EL 0.288 . PcyM_1247900 339 ELFQAAK|KH 0.060 . PcyM_1247900 340 LFQAAKK|HA 0.098 . PcyM_1247900 357 IDAVGSK|RS 0.057 . PcyM_1247900 358 DAVGSKR|SN 0.253 . PcyM_1247900 361 GSKRSNR|DN 0.663 *ProP* PcyM_1247900 367 RDNSAVR|MT 0.105 . PcyM_1247900 400 FPQSLDK|AL 0.061 . PcyM_1247900 404 LDKALVR|PG 0.073 . PcyM_1247900 407 ALVRPGR|LD 0.195 . PcyM_1247900 410 RPGRLDK|TI 0.134 . PcyM_1247900 420 VPLPDIK|GR 0.066 . PcyM_1247900 422 LPDIKGR|YE 0.105 . PcyM_1247900 427 GRYEILK|MY 0.081 . PcyM_1247900 432 LKMYSSK|IV 0.084 . PcyM_1247900 437 SKIVLSK|DV 0.103 . PcyM_1247900 446 DLHVLSR|RT 0.078 . PcyM_1247900 447 LHVLSRR|TV 0.256 . PcyM_1247900 466 LNIAAIK|CS 0.062 . PcyM_1247900 472 KCSVEGK|KA 0.083 . PcyM_1247900 473 CSVEGKK|AV 0.124 . PcyM_1247900 486 IEQAFDR|VV 0.121 . PcyM_1247900 493 VVVGLQR|KS 0.065 . PcyM_1247900 494 VVGLQRK|SP 0.087 . PcyM_1247900 502 PLNEEEK|NI 0.069 . PcyM_1247900 520 LVNFYTK|GS 0.085 . PcyM_1247900 527 GSDPVHK|AT 0.077 . PcyM_1247900 533 KATIMPR|GM 0.113 . PcyM_1247900 542 SLGVTWK|IP 0.062 . PcyM_1247900 548 KIPISDK|YS 0.074 . PcyM_1247900 552 SDKYSQK|IR 0.066 . PcyM_1247900 554 KYSQKIR|DV 0.237 . PcyM_1247900 576 EEIIFGK|NN 0.063 . PcyM_1247900 589 CSSDLQR|AT 0.147 . PcyM_1247900 617 SMFLQDK|KN 0.065 . PcyM_1247900 618 MFLQDKK|NI 0.107 . PcyM_1247900 625 NISEEMK|IK 0.069 . PcyM_1247900 627 SEEMKIK|ID 0.069 . PcyM_1247900 630 MKIKIDK|SI 0.104 . PcyM_1247900 634 IDKSIQR|IL 0.086 . PcyM_1247900 642 LLDSYNR|AK 0.070 . PcyM_1247900 644 DSYNRAK|KV 0.077 . PcyM_1247900 645 SYNRAKK|VL 0.349 . PcyM_1247900 656 HIDELHR|VA 0.089 . PcyM_1247900 673 LTSDEIK|LA 0.096 . PcyM_1247900 679 KLAMQGK|HD 0.069 . PcyM_1247900 684 GKHDQIR|KN 0.098 . PcyM_1247900 685 KHDQIRK|NR 0.077 . PcyM_1247900 687 DQIRKNR|EL 0.421 . PcyM_1247900 690 RKNRELK|QK 0.191 . PcyM_1247900 692 NRELKQK|EF 0.067 . PcyM_1247900 697 QKEFNLK|DS 0.074 . PcyM_1247900 700 FNLKDSR|IS 0.075 . ____________________________^_________________

  • Fasta :-

    >PcyM_1247900 ATGCTGCTGCTGCGGAACGTCGTGGTGGTGCACCTGAAGAGGAGCCACATGCTCTATGTG GGAAACCTGGCGAACGTGGAATGCATCCTGAACAACAAAAGGTGCTTTACCCTCTTGAAA AACGAAAGGTTGGATAGACTAAAGAGGGAAATCCGATACAAGCCAAATGATAATTTCCTC ATATTACAGTTTTATAAGGAAGCAAATGTACATAACCCAAATGAAGTTATAAAACATTAC GAGAGCAACAATAACATCAAAAATGAAAGCATAACTAAGGAGTACATAAAAGCGCTAGTG TATACAAATAAGTTGAAGTACACGAACTTGGATAATATAAAGTATGATAGCGACCCCATG TTATATAGGCGATTGGTGGATGAGTCGAGTCATTCAAATGATGTCAATAACGATCGTTCG AGTGTGTATGATACGGGGAATTTAAACGCGGATTCTGGCTACGCTAATATGGCTCAGTCA TCTCACAGAATAGAATATGGAGATAAAAAAAAAGGGGTGCACAGTGAAATTTATAGTTTA CAAATAGACCCCAAGAAGCCTTTAAAAGTGTCTGTAGTGGATGGAAGTAAAAAAGGCATG TGGGGTTTACTCAAGTCGACCATTGGGTTTCTAATTCTCGTGGCGGCGGCAAGTGTATAC CTAGAGGGAGTATCCCAGAATGTCCAAAAAGGTATAGGAGTAGTAAATAAGAAAATAATT CCAGTGGAAAATGTGAAAGTTACCTTTGCAGATGTAAAAGGGTGTGATGAAGTGAAACAG GAACTTGAAGAAATAATTGATTATTTAAAAAACTCAGATAAATTTACAAAAATAGGTGCC AAATTACCGAAGGGGATACTCCTGTCCGGCGAACCTGGCACAGGAAAAACGTTAATTGCT AGAGCCATAGCGGGGGAAGCGAATGTCCCTTTCCTCCAAGCATCAGGCTCCGAATTTGAA GAAATGTTCGTAGGAGTTGGTGCCAGAAGGATAAGAGAGCTCTTCCAAGCAGCCAAAAAA CATGCGCCATGTATCGTTTTTATTGACGAAATTGATGCAGTTGGATCTAAAAGAAGCAAC AGAGATAACAGTGCTGTCAGAATGACGCTAAACCAATTACTGGTCGAATTGGACGGGTTT GAACAGAACGAAGGAATAGTAGTAATCTGTGCAACGAACTTCCCACAAAGCTTAGACAAA GCGTTGGTAAGACCAGGAAGGTTGGACAAAACGATTGTAGTACCTTTGCCAGATATAAAA GGTAGGTATGAAATTTTAAAAATGTATAGCAGCAAAATTGTGCTGTCGAAAGATGTCGAT TTGCATGTCTTATCGAGAAGAACCGTTGGAATGACAGGAGCAGATTTGAATAATATACTC AACATAGCTGCTATTAAATGCTCCGTGGAAGGAAAGAAAGCGGTAGATATGAATTCAATT GAACAGGCATTTGATAGAGTCGTTGTGGGATTGCAAAGAAAATCTCCCCTAAATGAAGAA GAGAAAAATATTACAGCTTATCACGAAGGTGGTCATACATTAGTTAATTTTTACACAAAA GGTTCTGATCCTGTCCATAAGGCAACCATTATGCCTAGAGGCATGTCCCTAGGTGTTACT TGGAAAATCCCAATCAGTGATAAGTACAGCCAAAAAATCAGAGATGTACAAAGCGAAATA GATATCCTCATGGGAGGGTTAGTTTCTGAAGAAATTATTTTTGGAAAGAATAATGTAACC ACTGGGTGTTCTAGTGATTTGCAGAGGGCTACTCACATAGCACAATCTCTTGTTATGAAT TATGGGGTAGGAATTAATGAAGAAAATATATCCATGTTCTTGCAGGATAAAAAAAACATT AGTGAAGAAATGAAAATCAAAATTGATAAATCTATTCAGAGAATACTGTTAGATTCTTAT AACAGAGCCAAAAAGGTCCTGAATCAACACATTGATGAATTACACAGGGTTGCTTCTGCC CTCGTAGAGTATGAAACTCTGACCAGCGATGAAATAAAACTAGCTATGCAAGGGAAGCAT GATCAGATAAGAAAAAATAGAGAACTGAAACAGAAGGAGTTTAACTTGAAGGACAGCAGG ATTTCGTAA
  • Download Fasta

  • Fasta :-

    MLLLRNVVVVHLKRSHMLYVGNLANVECILNNKRCFTLLKNERLDRLKREIRYKPNDNFL ILQFYKEANVHNPNEVIKHYESNNNIKNESITKEYIKALVYTNKLKYTNLDNIKYDSDPM LYRRLVDESSHSNDVNNDRSSVYDTGNLNADSGYANMAQSSHRIEYGDKKKGVHSEIYSL QIDPKKPLKVSVVDGSKKGMWGLLKSTIGFLILVAAASVYLEGVSQNVQKGIGVVNKKII PVENVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIA RAIAGEANVPFLQASGSEFEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSN RDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDIK GRYEILKMYSSKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKAVDMNSI EQAFDRVVVGLQRKSPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLGVT WKIPISDKYSQKIRDVQSEIDILMGGLVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVMN YGVGINEENISMFLQDKKNISEEMKIKIDKSIQRILLDSYNRAKKVLNQHIDELHRVASA LVEYETLTSDEIKLAMQGKHDQIRKNRELKQKEFNLKDSRIS

  • title: ATP binding site
  • coordinates: E291,P292,G293,T294,G295,K296,T297,L298,D349,N393
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_1247900272 SYLKNSDKFT0.992unspPcyM_1247900272 SYLKNSDKFT0.992unspPcyM_1247900272 SYLKNSDKFT0.992unspPcyM_1247900359 SGSKRSNRDN0.992unspPcyM_1247900495 SLQRKSPLNE0.995unspPcyM_1247900141 SNDRSSVYDT0.998unspPcyM_1247900191 SPLKVSVVDG0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India