PcyM_1279200 | proteasome subunit alpha type-1, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_1279200OTHER0.9999650.0000140.000021
No Results

  • Fasta :-

    >PcyM_1279200 MYRNLYDTDNIIYSPEGRLYQVEYANEAIKQGTCAVAIKSKDFVVVCGLKKRISKLSFHQ EKLFKIDDYIGVTMSGITSDAKVLTKYMRNECLSHKFLFDENMNIEKLVKKVADKYQQNT QRSSRRAFGVGLIIAGYFKEPYIFETKPNGSYFEYIALSFGARSHASKTYLEKNLHLFEN SSLEELTLHCLKALRCSLSSENELTVENTSLAIVGKDKPWQEVTTVDLVELLMRVNAEQR TENIEADIQNEEIPPNEGDAPNPQGDQME
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1279200.fa Sequence name : PcyM_1279200 Sequence length : 269 VALUES OF COMPUTED PARAMETERS Coef20 : 3.351 CoefTot : -0.191 ChDiff : -6 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.694 1.371 0.042 0.615 MesoH : -0.856 0.067 -0.498 0.161 MuHd_075 : 25.902 13.951 5.146 6.804 MuHd_095 : 26.535 15.461 5.371 6.772 MuHd_100 : 26.539 17.309 5.804 6.751 MuHd_105 : 23.751 16.944 5.783 5.088 Hmax_075 : 4.200 4.433 -1.277 3.197 Hmax_095 : -2.400 1.600 -2.886 2.188 Hmax_100 : 8.600 8.900 0.179 3.830 Hmax_105 : 0.400 3.100 -1.493 2.570 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6194 0.3806 DFMC : 0.8235 0.1765
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 269 PcyM_1279200 MYRNLYDTDNIIYSPEGRLYQVEYANEAIKQGTCAVAIKSKDFVVVCGLKKRISKLSFHQEKLFKIDDYIGVTMSGITSD 80 AKVLTKYMRNECLSHKFLFDENMNIEKLVKKVADKYQQNTQRSSRRAFGVGLIIAGYFKEPYIFETKPNGSYFEYIALSF 160 GARSHASKTYLEKNLHLFENSSLEELTLHCLKALRCSLSSENELTVENTSLAIVGKDKPWQEVTTVDLVELLMRVNAEQR 240 TENIEADIQNEEIPPNEGDAPNPQGDQME 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1279200 3 ----MYR|NL 0.090 . PcyM_1279200 18 IYSPEGR|LY 0.090 . PcyM_1279200 30 YANEAIK|QG 0.063 . PcyM_1279200 39 TCAVAIK|SK 0.097 . PcyM_1279200 41 AVAIKSK|DF 0.071 . PcyM_1279200 50 VVVCGLK|KR 0.053 . PcyM_1279200 51 VVCGLKK|RI 0.085 . PcyM_1279200 52 VCGLKKR|IS 0.192 . PcyM_1279200 55 LKKRISK|LS 0.164 . PcyM_1279200 62 LSFHQEK|LF 0.061 . PcyM_1279200 65 HQEKLFK|ID 0.073 . PcyM_1279200 82 GITSDAK|VL 0.062 . PcyM_1279200 86 DAKVLTK|YM 0.063 . PcyM_1279200 89 VLTKYMR|NE 0.075 . PcyM_1279200 96 NECLSHK|FL 0.076 . PcyM_1279200 107 ENMNIEK|LV 0.070 . PcyM_1279200 110 NIEKLVK|KV 0.073 . PcyM_1279200 111 IEKLVKK|VA 0.144 . PcyM_1279200 115 VKKVADK|YQ 0.066 . PcyM_1279200 122 YQQNTQR|SS 0.149 . PcyM_1279200 125 NTQRSSR|RA 0.361 . PcyM_1279200 126 TQRSSRR|AF 0.299 . PcyM_1279200 139 IIAGYFK|EP 0.060 . PcyM_1279200 147 PYIFETK|PN 0.064 . PcyM_1279200 163 ALSFGAR|SH 0.126 . PcyM_1279200 168 ARSHASK|TY 0.080 . PcyM_1279200 173 SKTYLEK|NL 0.068 . PcyM_1279200 192 LTLHCLK|AL 0.063 . PcyM_1279200 195 HCLKALR|CS 0.075 . PcyM_1279200 216 SLAIVGK|DK 0.103 . PcyM_1279200 218 AIVGKDK|PW 0.067 . PcyM_1279200 234 LVELLMR|VN 0.075 . PcyM_1279200 240 RVNAEQR|TE 0.078 . ____________________________^_________________

  • Fasta :-

    >PcyM_1279200 ATGTATCGAAACCTGTACGACACAGACAATATTATTTACTCTCCGGAAGGAAGGCTGTAC CAAGTCGAATACGCGAATGAAGCTATAAAACAGGGGACCTGCGCCGTGGCTATAAAGTCC AAGGATTTTGTGGTCGTTTGTGGACTAAAGAAGCGCATAAGCAAGTTATCGTTCCACCAA GAAAAACTGTTCAAAATAGATGACTACATCGGTGTGACGATGAGTGGCATAACATCTGAC GCAAAGGTTTTGACGAAGTACATGCGAAACGAATGTCTGTCGCATAAGTTTCTATTTGAT GAAAATATGAATATAGAAAAATTAGTGAAAAAGGTGGCAGATAAGTATCAGCAGAATACT CAGAGGAGTAGTAGAAGGGCATTTGGTGTAGGGTTAATAATAGCTGGATATTTTAAGGAG CCCTATATTTTTGAAACGAAGCCAAATGGTTCATATTTTGAATACATTGCCTTATCGTTT GGTGCTAGATCTCATGCATCGAAAACTTATTTAGAAAAAAATTTACATTTATTTGAAAAT TCGTCGTTGGAGGAGCTTACTCTTCATTGCTTAAAGGCCTTAAGATGTTCCCTTTCGAGT GAAAATGAGTTAACTGTAGAAAATACGTCGCTAGCTATTGTTGGTAAGGATAAACCATGG CAAGAAGTTACCACTGTAGACTTAGTGGAGCTTCTAATGAGAGTAAACGCTGAACAGCGA ACTGAAAATATTGAGGCAGACATTCAGAATGAGGAAATTCCTCCAAATGAAGGAGATGCA CCAAATCCGCAGGGCGATCAAATGGAATGA
  • Download Fasta

  • Fasta :-

    MYRNLYDTDNIIYSPEGRLYQVEYANEAIKQGTCAVAIKSKDFVVVCGLKKRISKLSFHQ EKLFKIDDYIGVTMSGITSDAKVLTKYMRNECLSHKFLFDENMNIEKLVKKVADKYQQNT QRSSRRAFGVGLIIAGYFKEPYIFETKPNGSYFEYIALSFGARSHASKTYLEKNLHLFEN SSLEELTLHCLKALRCSLSSENELTVENTSLAIVGKDKPWQEVTTVDLVELLMRVNAEQR TENIEADIQNEEIPPNEGDAPNPQGDQME

  • title: active site
  • coordinates: T33,L49,K51,K62,A162
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India