PcyM_1314700 | ATP-dependent Clp protease proteolytic subunit, putative

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_IDPredictionOTHERSPmTPCS_Position
PcyM_1314700SP0.0014180.9983720.000209CS pos: 23-24. GEA-TA. Pr: 0.5855
No Results

  • Fasta :-

    >PcyM_1314700 MQSYLLLLVAIALSPLCAHKGEATAKYSYITSRSNVPVGRLKNLKKSKTKLLLSPGEHNQ QGISIPSMLLSKRIIFLSSPVYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKI INLNGITDVISIIDVIDYISSDVYTYCLGKAYGISCILASSGKKGFRFSLKNSSFCLNQS YSVIPFNQASNIEIQNKEIMNTKRKVVEIIANNTGKEKSHIERILERDRYFSAPEAVQFN LVDHILEKE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1314700.fa Sequence name : PcyM_1314700 Sequence length : 249 VALUES OF COMPUTED PARAMETERS Coef20 : 4.310 CoefTot : -1.826 ChDiff : 8 ZoneTo : 86 KR : 11 DE : 2 CleavSite : 83 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.606 1.865 0.303 0.639 MesoH : -0.357 0.418 -0.233 0.237 MuHd_075 : 23.663 16.874 6.853 6.297 MuHd_095 : 31.284 20.544 10.235 6.621 MuHd_100 : 30.280 17.381 8.922 5.408 MuHd_105 : 32.631 17.087 9.827 5.381 Hmax_075 : 15.700 14.350 5.192 6.340 Hmax_095 : 3.200 9.300 -0.795 3.500 Hmax_100 : 9.600 6.200 2.179 2.620 Hmax_105 : 9.275 13.200 2.215 3.750 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7174 0.2826 DFMC : 0.4546 0.5454 This protein is probably imported in chloroplast. f(Ser) = 0.1512 f(Arg) = 0.0349 CMi = 1.27202 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 249 PcyM_1314700 MQSYLLLLVAIALSPLCAHKGEATAKYSYITSRSNVPVGRLKNLKKSKTKLLLSPGEHNQQGISIPSMLLSKRIIFLSSP 80 VYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKIINLNGITDVISIIDVIDYISSDVYTYCLGKAYGISCILAS 160 SGKKGFRFSLKNSSFCLNQSYSVIPFNQASNIEIQNKEIMNTKRKVVEIIANNTGKEKSHIERILERDRYFSAPEAVQFN 240 LVDHILEKE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ......... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1314700 20 SPLCAHK|GE 0.066 . PcyM_1314700 26 KGEATAK|YS 0.070 . PcyM_1314700 33 YSYITSR|SN 0.155 . PcyM_1314700 40 SNVPVGR|LK 0.079 . PcyM_1314700 42 VPVGRLK|NL 0.061 . PcyM_1314700 45 GRLKNLK|KS 0.065 . PcyM_1314700 46 RLKNLKK|SK 0.182 . PcyM_1314700 48 KNLKKSK|TK 0.059 . PcyM_1314700 50 LKKSKTK|LL 0.063 . PcyM_1314700 72 PSMLLSK|RI 0.054 . PcyM_1314700 73 SMLLSKR|II 0.144 . PcyM_1314700 101 YLEYESK|RK 0.057 . PcyM_1314700 102 LEYESKR|KP 0.119 . PcyM_1314700 103 EYESKRK|PI 0.085 . PcyM_1314700 119 GDLENNK|II 0.058 . PcyM_1314700 150 YTYCLGK|AY 0.062 . PcyM_1314700 163 ILASSGK|KG 0.057 . PcyM_1314700 164 LASSGKK|GF 0.112 . PcyM_1314700 167 SGKKGFR|FS 0.085 . PcyM_1314700 171 GFRFSLK|NS 0.086 . PcyM_1314700 197 NIEIQNK|EI 0.064 . PcyM_1314700 203 KEIMNTK|RK 0.057 . PcyM_1314700 204 EIMNTKR|KV 0.271 . PcyM_1314700 205 IMNTKRK|VV 0.150 . PcyM_1314700 216 IANNTGK|EK 0.097 . PcyM_1314700 218 NNTGKEK|SH 0.070 . PcyM_1314700 223 EKSHIER|IL 0.112 . PcyM_1314700 227 IERILER|DR 0.093 . PcyM_1314700 229 RILERDR|YF 0.093 . PcyM_1314700 248 VDHILEK|E- 0.064 . ____________________________^_________________

  • Fasta :-

    >PcyM_1314700 ATGCAAAGTTACCTGCTGCTGCTTGTCGCGATTGCCCTTTCCCCCCTATGTGCACATAAA GGGGAGGCAACCGCCAAGTACAGCTACATAACCAGCAGAAGCAACGTACCAGTAGGAAGA TTAAAAAATCTAAAAAAGTCCAAAACGAAGTTGCTCCTTTCCCCAGGTGAACACAACCAA CAGGGGATCAGCATCCCGTCAATGTTACTCTCCAAGAGAATCATATTTCTATCATCTCCA GTATATCCCCATATATCCGAGCAAATAATCTCACAGCTCCTCTACCTCGAGTATGAGTCC AAAAGAAAACCAATCCATTTATACATTAACAGTACAGGCGATTTAGAAAATAATAAAATT ATAAATCTTAATGGAATCACAGATGTCATATCGATCATAGATGTAATAGATTACATTTCG TCTGATGTGTATACATACTGTTTGGGGAAGGCGTATGGGATTTCCTGCATTTTGGCTAGC AGTGGGAAAAAGGGGTTTCGTTTTTCTCTCAAAAACTCCTCGTTCTGCTTGAACCAGTCC TACTCAGTTATCCCCTTCAACCAAGCGTCTAACATTGAAATACAGAACAAGGAAATTATG AACACTAAGAGGAAGGTCGTGGAAATTATTGCCAACAACACGGGGAAGGAGAAGAGCCAC ATCGAGCGCATTTTGGAGAGGGACAGGTACTTCAGCGCGCCCGAGGCTGTGCAGTTCAAC TTGGTCGACCATATCCTCGAGAAGGAGTAG
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  • Fasta :-

    MQSYLLLLVAIALSPLCAHKGEATAKYSYITSRSNVPVGRLKNLKKSKTKLLLSPGEHNQ QGISIPSMLLSKRIIFLSSPVYPHISEQIISQLLYLEYESKRKPIHLYINSTGDLENNKI INLNGITDVISIIDVIDYISSDVYTYCLGKAYGISCILASSGKKGFRFSLKNSSFCLNQS YSVIPFNQASNIEIQNKEIMNTKRKVVEIIANNTGKEKSHIERILERDRYFSAPEAVQFN LVDHILEKE

  • title: active site residues
  • coordinates: G153,N178,D228
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_1314700232 SDRYFSAPEA0.996unspPcyM_1314700232 SDRYFSAPEA0.996unspPcyM_1314700232 SDRYFSAPEA0.996unspPcyM_131470054 SKLLLSPGEH0.994unspPcyM_1314700169 SGFRFSLKNS0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India