PcyM_1314800 | conserved Plasmodium protein, unknown function

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No Results
No Results

  • Fasta :-

    >PcyM_1314800 MLAKRLLLNARTPANLARYNALRRGGSLPWARKLTSSRDQTTHFGKKKKQNENKEIGKGE IKSIDHPADEKPSNFHEQDGGSKGILTHLVSKNGKKPIAGELPNLVLAILKEKSSLQSEK KTLIDQYKQIVCVRLEGGSQNSADKKDALNFSDIFATLYLCYTEKIFDLDFVTKVNAALE VLLSGVGGKMDQMDQMDQSDQSGHRGNPGNRGNRGEGEKDVLNEATINHCMMMLHYLSSL NVKNVTLCNQVRDYIVSNEVPPLVIYHYLECLSLLADSTDRRGKNSLRDYVVPVVEIFLE NFYNFNNYLVLRILQFLHKLSFMDAELFLLLTRKINKNVYRENANRFELCLLARTYALYK KENITFNNYLCEDLMSSLTKYEDNFQSDEDGPVSSPVSSPVSGPVSGQVGNPDSHPDGST PDDESSRLLQSQPANTPDVLEIENVNRQNYPLFKHPLYNGGLNFYAFFVDAKTTNRDKCF ERKNYLNMTFVNSNANEKEHQRTSTHMSEWHKLFLYDEYKEKDIKNEPFVKLEDTQKGDK QMVEAYNQSLAENLHFQFSHKKIAQLFEQVSERMDNVQVDFTADEEAPTEMDDEAVHQYK KKILYVENYYIGHIFDIVDSLLALKAHHNCATFKKMENKILNVIKNNELYIIDNFDSDEI KSLLIFLSHTNRNYKEAFIYCLTHRMVDLYINNLCQPSTLSTFFYFLLNFTKRRVVKKNR FNHTIRNVIYNSYSWLNDNKSVLNLTAGIDATNWQEKENSDTRRVIKAKNYSLLQVLSMH VCKNVYFMSLSTLASLLRSVSYLFFTDANFFNVFIPLFMKHMADLSNVDILNITQAYNKQ KIQNKYFYYLLAKQYQSNRSEETKNADQKIKLVG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1314800.fa Sequence name : PcyM_1314800 Sequence length : 874 VALUES OF COMPUTED PARAMETERS Coef20 : 4.650 CoefTot : 1.312 ChDiff : 3 ZoneTo : 38 KR : 9 DE : 0 CleavSite : 42 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.282 1.412 0.069 0.634 MesoH : 0.025 0.676 -0.296 0.295 MuHd_075 : 47.880 22.813 10.431 10.636 MuHd_095 : 23.738 14.228 5.952 5.667 MuHd_100 : 34.484 19.347 8.831 7.748 MuHd_105 : 41.848 20.772 10.016 9.518 Hmax_075 : 11.083 11.667 -0.578 3.162 Hmax_095 : 4.200 3.900 -1.005 2.590 Hmax_100 : 11.800 13.200 1.863 4.800 Hmax_105 : 11.900 13.300 1.863 4.877 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0042 0.9958 DFMC : 0.0028 0.9972 This protein is probably imported in mitochondria. f(Ser) = 0.0789 f(Arg) = 0.1842 CMi = 0.24077 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 874 PcyM_1314800 MLAKRLLLNARTPANLARYNALRRGGSLPWARKLTSSRDQTTHFGKKKKQNENKEIGKGEIKSIDHPADEKPSNFHEQDG 80 GSKGILTHLVSKNGKKPIAGELPNLVLAILKEKSSLQSEKKTLIDQYKQIVCVRLEGGSQNSADKKDALNFSDIFATLYL 160 CYTEKIFDLDFVTKVNAALEVLLSGVGGKMDQMDQMDQSDQSGHRGNPGNRGNRGEGEKDVLNEATINHCMMMLHYLSSL 240 NVKNVTLCNQVRDYIVSNEVPPLVIYHYLECLSLLADSTDRRGKNSLRDYVVPVVEIFLENFYNFNNYLVLRILQFLHKL 320 SFMDAELFLLLTRKINKNVYRENANRFELCLLARTYALYKKENITFNNYLCEDLMSSLTKYEDNFQSDEDGPVSSPVSSP 400 VSGPVSGQVGNPDSHPDGSTPDDESSRLLQSQPANTPDVLEIENVNRQNYPLFKHPLYNGGLNFYAFFVDAKTTNRDKCF 480 ERKNYLNMTFVNSNANEKEHQRTSTHMSEWHKLFLYDEYKEKDIKNEPFVKLEDTQKGDKQMVEAYNQSLAENLHFQFSH 560 KKIAQLFEQVSERMDNVQVDFTADEEAPTEMDDEAVHQYKKKILYVENYYIGHIFDIVDSLLALKAHHNCATFKKMENKI 640 LNVIKNNELYIIDNFDSDEIKSLLIFLSHTNRNYKEAFIYCLTHRMVDLYINNLCQPSTLSTFFYFLLNFTKRRVVKKNR 720 FNHTIRNVIYNSYSWLNDNKSVLNLTAGIDATNWQEKENSDTRRVIKAKNYSLLQVLSMHVCKNVYFMSLSTLASLLRSV 800 SYLFFTDANFFNVFIPLFMKHMADLSNVDILNITQAYNKQKIQNKYFYYLLAKQYQSNRSEETKNADQKIKLVG 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 .......................................................................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1314800 4 ---MLAK|RL 0.057 . PcyM_1314800 5 --MLAKR|LL 0.132 . PcyM_1314800 11 RLLLNAR|TP 0.068 . PcyM_1314800 18 TPANLAR|YN 0.128 . PcyM_1314800 23 ARYNALR|RG 0.093 . PcyM_1314800 24 RYNALRR|GG 0.103 . PcyM_1314800 32 GSLPWAR|KL 0.106 . PcyM_1314800 33 SLPWARK|LT 0.079 . PcyM_1314800 38 RKLTSSR|DQ 0.114 . PcyM_1314800 46 QTTHFGK|KK 0.069 . PcyM_1314800 47 TTHFGKK|KK 0.093 . PcyM_1314800 48 THFGKKK|KQ 0.103 . PcyM_1314800 49 HFGKKKK|QN 0.183 . PcyM_1314800 54 KKQNENK|EI 0.116 . PcyM_1314800 58 ENKEIGK|GE 0.071 . PcyM_1314800 62 IGKGEIK|SI 0.078 . PcyM_1314800 71 DHPADEK|PS 0.058 . PcyM_1314800 83 EQDGGSK|GI 0.063 . PcyM_1314800 92 LTHLVSK|NG 0.059 . PcyM_1314800 95 LVSKNGK|KP 0.073 . PcyM_1314800 96 VSKNGKK|PI 0.122 . PcyM_1314800 111 LVLAILK|EK 0.056 . PcyM_1314800 113 LAILKEK|SS 0.085 . PcyM_1314800 120 SSLQSEK|KT 0.064 . PcyM_1314800 121 SLQSEKK|TL 0.135 . PcyM_1314800 128 TLIDQYK|QI 0.076 . PcyM_1314800 134 KQIVCVR|LE 0.108 . PcyM_1314800 145 SQNSADK|KD 0.060 . PcyM_1314800 146 QNSADKK|DA 0.160 . PcyM_1314800 165 YLCYTEK|IF 0.062 . PcyM_1314800 174 DLDFVTK|VN 0.063 . PcyM_1314800 189 LSGVGGK|MD 0.066 . PcyM_1314800 205 SDQSGHR|GN 0.090 . PcyM_1314800 211 RGNPGNR|GN 0.098 . PcyM_1314800 214 PGNRGNR|GE 0.247 . PcyM_1314800 219 NRGEGEK|DV 0.079 . PcyM_1314800 243 LSSLNVK|NV 0.074 . PcyM_1314800 252 TLCNQVR|DY 0.119 . PcyM_1314800 281 LADSTDR|RG 0.070 . PcyM_1314800 282 ADSTDRR|GK 0.145 . PcyM_1314800 284 STDRRGK|NS 0.094 . PcyM_1314800 288 RGKNSLR|DY 0.088 . PcyM_1314800 312 NNYLVLR|IL 0.078 . PcyM_1314800 319 ILQFLHK|LS 0.059 . PcyM_1314800 333 LFLLLTR|KI 0.071 . PcyM_1314800 334 FLLLTRK|IN 0.069 . PcyM_1314800 337 LTRKINK|NV 0.075 . PcyM_1314800 341 INKNVYR|EN 0.094 . PcyM_1314800 346 YRENANR|FE 0.084 . PcyM_1314800 354 ELCLLAR|TY 0.073 . PcyM_1314800 360 RTYALYK|KE 0.058 . PcyM_1314800 361 TYALYKK|EN 0.093 . PcyM_1314800 380 LMSSLTK|YE 0.084 . PcyM_1314800 427 PDDESSR|LL 0.078 . PcyM_1314800 447 EIENVNR|QN 0.094 . PcyM_1314800 454 QNYPLFK|HP 0.060 . PcyM_1314800 472 AFFVDAK|TT 0.061 . PcyM_1314800 476 DAKTTNR|DK 0.095 . PcyM_1314800 478 KTTNRDK|CF 0.059 . PcyM_1314800 482 RDKCFER|KN 0.084 . PcyM_1314800 483 DKCFERK|NY 0.074 . PcyM_1314800 498 NSNANEK|EH 0.060 . PcyM_1314800 502 NEKEHQR|TS 0.085 . PcyM_1314800 512 HMSEWHK|LF 0.062 . PcyM_1314800 520 FLYDEYK|EK 0.063 . PcyM_1314800 522 YDEYKEK|DI 0.075 . PcyM_1314800 525 YKEKDIK|NE 0.053 . PcyM_1314800 531 KNEPFVK|LE 0.064 . PcyM_1314800 537 KLEDTQK|GD 0.065 . PcyM_1314800 540 DTQKGDK|QM 0.058 . PcyM_1314800 561 HFQFSHK|KI 0.079 . PcyM_1314800 562 FQFSHKK|IA 0.100 . PcyM_1314800 573 FEQVSER|MD 0.097 . PcyM_1314800 600 EAVHQYK|KK 0.062 . PcyM_1314800 601 AVHQYKK|KI 0.101 . PcyM_1314800 602 VHQYKKK|IL 0.120 . PcyM_1314800 625 DSLLALK|AH 0.054 . PcyM_1314800 634 HNCATFK|KM 0.072 . PcyM_1314800 635 NCATFKK|ME 0.140 . PcyM_1314800 639 FKKMENK|IL 0.074 . PcyM_1314800 645 KILNVIK|NN 0.067 . PcyM_1314800 661 FDSDEIK|SL 0.087 . PcyM_1314800 672 FLSHTNR|NY 0.093 . PcyM_1314800 675 HTNRNYK|EA 0.172 . PcyM_1314800 685 IYCLTHR|MV 0.125 . PcyM_1314800 712 FLLNFTK|RR 0.054 . PcyM_1314800 713 LLNFTKR|RV 0.285 . PcyM_1314800 714 LNFTKRR|VV 0.268 . PcyM_1314800 717 TKRRVVK|KN 0.149 . PcyM_1314800 718 KRRVVKK|NR 0.121 . PcyM_1314800 720 RVVKKNR|FN 0.144 . PcyM_1314800 726 RFNHTIR|NV 0.115 . PcyM_1314800 740 SWLNDNK|SV 0.086 . PcyM_1314800 757 ATNWQEK|EN 0.081 . PcyM_1314800 763 KENSDTR|RV 0.112 . PcyM_1314800 764 ENSDTRR|VI 0.239 . PcyM_1314800 767 DTRRVIK|AK 0.156 . PcyM_1314800 769 RRVIKAK|NY 0.082 . PcyM_1314800 783 LSMHVCK|NV 0.078 . PcyM_1314800 798 TLASLLR|SV 0.237 . PcyM_1314800 820 FIPLFMK|HM 0.056 . PcyM_1314800 839 ITQAYNK|QK 0.060 . PcyM_1314800 841 QAYNKQK|IQ 0.074 . PcyM_1314800 845 KQKIQNK|YF 0.069 . PcyM_1314800 853 FYYLLAK|QY 0.060 . PcyM_1314800 859 KQYQSNR|SE 0.140 . PcyM_1314800 864 NRSEETK|NA 0.116 . PcyM_1314800 869 TKNADQK|IK 0.073 . PcyM_1314800 871 NADQKIK|LV 0.096 . ____________________________^_________________

  • Fasta :-

    >PcyM_1314800 ATGCTCGCAAAAAGGTTGCTGCTAAACGCGCGCACACCGGCTAACCTTGCCAGGTACAAC GCCCTCAGGAGAGGAGGATCACTCCCCTGGGCCAGGAAACTCACCTCCTCACGTGATCAG ACCACCCATTTTGGAAAAAAAAAAAAGCAAAATGAGAATAAAGAAATAGGGAAAGGAGAA ATCAAGTCGATTGACCACCCCGCGGACGAGAAACCATCTAACTTTCACGAGCAAGATGGA GGGTCTAAAGGAATACTCACCCACTTGGTAAGCAAAAATGGAAAGAAACCAATAGCAGGG GAGCTGCCCAATTTAGTGCTTGCAATTTTGAAGGAAAAATCGTCTCTACAGTCAGAAAAA AAAACGCTAATAGATCAGTACAAACAAATTGTGTGTGTACGTTTGGAAGGGGGGTCCCAA AATAGTGCAGATAAAAAGGACGCCCTCAATTTTTCGGACATTTTTGCCACCCTGTATTTG TGTTACACGGAAAAGATATTCGACTTGGACTTCGTGACCAAAGTGAATGCCGCGCTGGAA GTGCTGCTCAGCGGGGTGGGCGGCAAAATGGATCAAATGGATCAAATGGATCAAAGCGAT CAAAGCGGCCATCGTGGTAATCCAGGCAATCGTGGCAATCGCGGTGAAGGGGAGAAAGAC GTGCTGAACGAGGCCACCATCAACCACTGCATGATGATGTTACACTACTTATCCTCCTTA AATGTCAAAAATGTAACATTATGCAACCAAGTGAGGGACTATATCGTAAGCAACGAGGTG CCCCCCCTGGTCATCTACCATTACCTAGAATGCCTGAGCCTGCTAGCCGACTCGACCGAC AGAAGAGGCAAGAATAGTCTGCGCGATTATGTTGTTCCCGTCGTAGAAATTTTCTTGGAA AATTTTTACAACTTCAACAATTACCTTGTGCTGCGCATTCTGCAGTTCCTACATAAACTG AGCTTTATGGACGCAGAACTATTTCTCCTGCTGACAAGGAAGATAAATAAAAATGTGTAT CGGGAGAATGCGAACCGGTTTGAGTTGTGCTTGCTGGCGCGTACATACGCCCTCTACAAA AAGGAAAACATCACCTTTAATAATTACCTGTGTGAAGATTTGATGAGCAGCTTGACCAAG TATGAGGACAACTTTCAGAGCGACGAGGATGGCCCGGTTAGCAGTCCGGTTAGCAGTCCG GTTAGCGGCCCGGTTAGCGGCCAAGTTGGCAACCCGGATAGCCACCCAGATGGCAGCACC CCTGACGACGAATCTTCCCGCTTGCTGCAAAGCCAACCCGCGAACACCCCCGACGTGCTC GAAATTGAAAACGTGAACCGGCAGAACTACCCCCTCTTTAAGCACCCCCTGTACAACGGC GGATTGAACTTCTACGCCTTCTTCGTTGACGCGAAGACAACCAACAGGGACAAGTGCTTC GAACGGAAAAACTATTTGAACATGACTTTTGTAAACAGTAATGCTAACGAGAAAGAGCAC CAAAGAACCAGTACACACATGTCCGAGTGGCACAAGCTATTCCTTTACGATGAGTACAAA GAGAAGGATATAAAAAACGAACCATTCGTTAAATTGGAAGACACGCAAAAGGGGGATAAA CAAATGGTTGAAGCGTATAATCAATCTTTAGCAGAAAATCTGCACTTCCAATTTAGCCAT AAGAAAATTGCACAACTGTTTGAACAGGTGAGCGAACGTATGGATAATGTCCAAGTCGAT TTCACGGCCGATGAGGAGGCACCCACAGAAATGGATGATGAAGCTGTTCACCAGTACAAG AAAAAAATTCTTTATGTTGAAAATTATTACATTGGTCATATATTTGACATAGTAGACTCT TTGCTAGCTTTGAAAGCACACCACAATTGTGCCACATTCAAAAAAATGGAAAATAAAATT TTGAATGTTATAAAAAATAATGAACTGTACATAATTGACAATTTTGACAGTGATGAAATT AAAAGCCTTTTAATTTTTTTATCGCACACAAATAGGAATTACAAAGAGGCATTTATTTAC TGCCTGACGCATCGAATGGTGGATCTGTACATTAATAACTTGTGTCAGCCCAGCACACTG TCCACATTTTTTTATTTTTTGTTGAATTTTACAAAGCGCAGAGTTGTTAAGAAGAACAGA TTTAACCACACCATAAGGAATGTCATATATAATAGCTATTCCTGGCTGAATGACAATAAA AGCGTTTTAAATCTGACCGCGGGTATCGATGCGACCAACTGGCAGGAAAAAGAAAACAGT GACACACGTCGCGTTATCAAAGCCAAAAATTACTCCCTGCTCCAAGTTCTCTCCATGCAT GTGTGCAAAAATGTCTATTTTATGAGCCTCTCAACGCTAGCCTCCCTACTCAGATCAGTG TCTTACTTGTTCTTCACCGATGCCAATTTTTTTAATGTGTTCATACCTTTATTTATGAAG CACATGGCAGATCTGAGCAATGTAGACATTTTGAACATAACTCAGGCCTACAACAAGCAA AAGATCCAAAACAAATATTTCTACTACTTGCTGGCAAAGCAGTACCAGAGCAACCGTTCG GAGGAAACGAAAAATGCCGACCAGAAAATTAAGCTAGTTGGCTAG
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_1314800286 SRGKNSLRDY0.997unspPcyM_1314800286 SRGKNSLRDY0.997unspPcyM_1314800286 SRGKNSLRDY0.997unspPcyM_1314800387 SDNFQSDEDG0.992unspPcyM_1314800419 SHPDGSTPDD0.993unspPcyM_1314800504 SHQRTSTHMS0.995unspPcyM_131480036 SRKLTSSRDQ0.997unspPcyM_1314800118 SSSLQSEKKT0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India