PcyM_1318000 | microsomal signal peptidase 12 kDa subunit, putative

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  • Fasta :-

    >PcyM_1318000 MGLISAIKNSIERTYVCVRRNHMDFHGQKLAFLIKNIVFTISTIVSIAVGYYKQDLALSA YIILAGTALSALLIMPTWPMYNKHNIQWQSADESMEDKKKR
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1318000.fa Sequence name : PcyM_1318000 Sequence length : 101 VALUES OF COMPUTED PARAMETERS Coef20 : 4.688 CoefTot : -0.010 ChDiff : 5 ZoneTo : 11 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.024 2.100 0.385 0.736 MesoH : 0.136 0.760 -0.218 0.343 MuHd_075 : 26.731 13.243 6.192 5.519 MuHd_095 : 26.257 19.071 7.965 6.919 MuHd_100 : 25.834 20.779 8.612 6.404 MuHd_105 : 24.342 20.030 8.459 5.221 Hmax_075 : 10.033 15.600 2.810 5.030 Hmax_095 : 15.200 19.500 3.803 6.610 Hmax_100 : 16.500 20.000 4.890 6.610 Hmax_105 : 18.500 21.400 5.493 6.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5229 0.4771 DFMC : 0.6810 0.3190
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 101 PcyM_1318000 MGLISAIKNSIERTYVCVRRNHMDFHGQKLAFLIKNIVFTISTIVSIAVGYYKQDLALSAYIILAGTALSALLIMPTWPM 80 YNKHNIQWQSADESMEDKKKR 160 ................................................................................ 80 ..................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1318000 8 GLISAIK|NS 0.055 . PcyM_1318000 13 IKNSIER|TY 0.086 . PcyM_1318000 19 RTYVCVR|RN 0.084 . PcyM_1318000 20 TYVCVRR|NH 0.154 . PcyM_1318000 29 MDFHGQK|LA 0.066 . PcyM_1318000 35 KLAFLIK|NI 0.066 . PcyM_1318000 53 IAVGYYK|QD 0.056 . PcyM_1318000 83 TWPMYNK|HN 0.068 . PcyM_1318000 98 DESMEDK|KK 0.066 . PcyM_1318000 99 ESMEDKK|KR 0.087 . PcyM_1318000 100 SMEDKKK|R- 0.100 . PcyM_1318000 101 MEDKKKR|-- 0.282 . ____________________________^_________________

  • Fasta :-

    >PcyM_1318000 ATGGGTCTAATTAGCGCTATTAAAAACAGCATAGAGCGCACCTACGTGTGTGTCCGGAGG AATCACATGGATTTCCACGGTCAGAAGCTCGCATTTTTAATCAAAAATATCGTATTCACC ATCAGCACAATTGTCTCCATTGCAGTCGGTTATTACAAGCAGGACTTAGCCTTGAGTGCC TACATCATTTTGGCCGGTACCGCCTTGTCTGCATTGCTAATCATGCCCACGTGGCCCATG TACAACAAGCACAACATTCAGTGGCAAAGTGCAGATGAGTCCATGGAGGATAAGAAGAAA AGATAA
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  • Fasta :-

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IDSitePeptideScoreMethod
PcyM_131800094 SSADESMEDK0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India