PcyM_1344200 | rhomboid protease ROM8, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1344200OTHER0.9999980.0000000.000002
No Results

  • Fasta :-

    >PcyM_1344200 MENNKSGENAKAFLESKDKRGKMDDDDEDDDKKKKHDKDKQNGNHKSNAGAAHRKKDGKD SNTKRIGNDNDRDQKNGGGKNSDKNGNAKVGGTADDSNLNNDSAPPIDSNPPKTHNVTKK KERKSNSISLSDTSARRSKDKGDKAHHKQKQGSAESTERRKRDGKNVKDAKDAKDAKDAK DAKNAMHVKDAEKAKHEHGEEEEEEEEDDDEDDEEYDDEEDDDDDEEEEDDDDDEEDDED EEDDDDEENEDEEKRKNNDINKAQSRKKEKLLQNELLNLDSSNTVQFFNLLNGKNKEKDD NNNSSKKERYRSSNLKKEKKLKMSHTYEEFLSDHHDYMSLKVNYKINKKSHYDKTKKRPH MSISISENKERNLNKSSICTDNAKFLNFLNDNEKNAHYYKNRKRYESRRRKQKKSSIKIK EKNETKETLDNYILNVNEKNKYNEIMSSENVDKVKMSMKHYPAGKKTDEAYVSELQDAEQ KQQMKDEERQKNYASTVEEEKKIIKEKSKIKSSMQCSRRFFIFQKKTLRKRKEKIIIFLN HNYSACENGQFNDHFYKTIHKNDLENLEEERIYIDNEKENTIKKIIYRIFPQFSIFSLIL YVTFIQWVIFILLISVKSDFTLTPSNDSLKNFGSNFPHNIFKKAEFYRLFTALFLHSNFN HICANTYVQLTVGFLLEYMYGTYVVFLVYVFTGIFGIILSSPLTYCYSTTESSSSSSGII GIFFSEILMMTNFNVDKISISVHLFCFFLLLLFLKFSLNTVSINIYSHFFGFLGGFLIGI ILKRNQLKYFLKNNLLIQILSLVFLIVSLATAIFISTYVVQSCPN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1344200.fa Sequence name : PcyM_1344200 Sequence length : 825 VALUES OF COMPUTED PARAMETERS Coef20 : 3.302 CoefTot : 0.000 ChDiff : -7 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.459 2.853 0.523 0.951 MesoH : 1.199 1.474 0.112 0.573 MuHd_075 : 11.179 6.004 3.012 0.837 MuHd_095 : 9.520 5.950 1.482 1.271 MuHd_100 : 16.396 7.134 4.219 2.022 MuHd_105 : 28.804 10.874 7.735 3.455 Hmax_075 : -10.033 -0.817 -5.286 -0.070 Hmax_095 : -15.137 -5.950 -7.465 -1.033 Hmax_100 : -3.900 -0.200 -3.626 0.940 Hmax_105 : -3.900 0.700 -3.626 1.307 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9926 0.0074 DFMC : 0.9836 0.0164
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 825 PcyM_1344200 MENNKSGENAKAFLESKDKRGKMDDDDEDDDKKKKHDKDKQNGNHKSNAGAAHRKKDGKDSNTKRIGNDNDRDQKNGGGK 80 NSDKNGNAKVGGTADDSNLNNDSAPPIDSNPPKTHNVTKKKERKSNSISLSDTSARRSKDKGDKAHHKQKQGSAESTERR 160 KRDGKNVKDAKDAKDAKDAKDAKNAMHVKDAEKAKHEHGEEEEEEEEDDDEDDEEYDDEEDDDDDEEEEDDDDDEEDDED 240 EEDDDDEENEDEEKRKNNDINKAQSRKKEKLLQNELLNLDSSNTVQFFNLLNGKNKEKDDNNNSSKKERYRSSNLKKEKK 320 LKMSHTYEEFLSDHHDYMSLKVNYKINKKSHYDKTKKRPHMSISISENKERNLNKSSICTDNAKFLNFLNDNEKNAHYYK 400 NRKRYESRRRKQKKSSIKIKEKNETKETLDNYILNVNEKNKYNEIMSSENVDKVKMSMKHYPAGKKTDEAYVSELQDAEQ 480 KQQMKDEERQKNYASTVEEEKKIIKEKSKIKSSMQCSRRFFIFQKKTLRKRKEKIIIFLNHNYSACENGQFNDHFYKTIH 560 KNDLENLEEERIYIDNEKENTIKKIIYRIFPQFSIFSLILYVTFIQWVIFILLISVKSDFTLTPSNDSLKNFGSNFPHNI 640 FKKAEFYRLFTALFLHSNFNHICANTYVQLTVGFLLEYMYGTYVVFLVYVFTGIFGIILSSPLTYCYSTTESSSSSSGII 720 GIFFSEILMMTNFNVDKISISVHLFCFFLLLLFLKFSLNTVSINIYSHFFGFLGGFLIGIILKRNQLKYFLKNNLLIQIL 800 SLVFLIVSLATAIFISTYVVQSCPN 880 ................................................................................ 80 ................................................................................ 160 .P.............................................................................. 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ......................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PcyM_1344200 5 --MENNK|SG 0.072 . PcyM_1344200 11 KSGENAK|AF 0.066 . PcyM_1344200 17 KAFLESK|DK 0.069 . PcyM_1344200 19 FLESKDK|RG 0.058 . PcyM_1344200 20 LESKDKR|GK 0.257 . PcyM_1344200 22 SKDKRGK|MD 0.076 . PcyM_1344200 32 DDEDDDK|KK 0.055 . PcyM_1344200 33 DEDDDKK|KK 0.088 . PcyM_1344200 34 EDDDKKK|KH 0.091 . PcyM_1344200 35 DDDKKKK|HD 0.114 . PcyM_1344200 38 KKKKHDK|DK 0.089 . PcyM_1344200 40 KKHDKDK|QN 0.092 . PcyM_1344200 46 KQNGNHK|SN 0.086 . PcyM_1344200 54 NAGAAHR|KK 0.089 . PcyM_1344200 55 AGAAHRK|KD 0.098 . PcyM_1344200 56 GAAHRKK|DG 0.147 . PcyM_1344200 59 HRKKDGK|DS 0.101 . PcyM_1344200 64 GKDSNTK|RI 0.062 . PcyM_1344200 65 KDSNTKR|IG 0.227 . PcyM_1344200 72 IGNDNDR|DQ 0.101 . PcyM_1344200 75 DNDRDQK|NG 0.108 . PcyM_1344200 80 QKNGGGK|NS 0.077 . PcyM_1344200 84 GGKNSDK|NG 0.069 . PcyM_1344200 89 DKNGNAK|VG 0.081 . PcyM_1344200 113 IDSNPPK|TH 0.073 . PcyM_1344200 119 KTHNVTK|KK 0.079 . PcyM_1344200 120 THNVTKK|KE 0.160 . PcyM_1344200 121 HNVTKKK|ER 0.086 . PcyM_1344200 123 VTKKKER|KS 0.084 . PcyM_1344200 124 TKKKERK|SN 0.218 . PcyM_1344200 136 LSDTSAR|RS 0.103 . PcyM_1344200 137 SDTSARR|SK 0.282 . PcyM_1344200 139 TSARRSK|DK 0.404 . PcyM_1344200 141 ARRSKDK|GD 0.090 . PcyM_1344200 144 SKDKGDK|AH 0.070 . PcyM_1344200 148 GDKAHHK|QK 0.074 . PcyM_1344200 150 KAHHKQK|QG 0.084 . PcyM_1344200 159 SAESTER|RK 0.088 . PcyM_1344200 160 AESTERR|KR 0.147 . PcyM_1344200 161 ESTERRK|RD 0.081 . PcyM_1344200 162 STERRKR|DG 0.612 *ProP* PcyM_1344200 165 RRKRDGK|NV 0.267 . PcyM_1344200 168 RDGKNVK|DA 0.097 . PcyM_1344200 171 KNVKDAK|DA 0.103 . PcyM_1344200 174 KDAKDAK|DA 0.116 . PcyM_1344200 177 KDAKDAK|DA 0.115 . PcyM_1344200 180 KDAKDAK|DA 0.106 . PcyM_1344200 183 KDAKDAK|NA 0.088 . PcyM_1344200 189 KNAMHVK|DA 0.136 . PcyM_1344200 193 HVKDAEK|AK 0.065 . PcyM_1344200 195 KDAEKAK|HE 0.101 . PcyM_1344200 254 ENEDEEK|RK 0.055 . PcyM_1344200 255 NEDEEKR|KN 0.153 . PcyM_1344200 256 EDEEKRK|NN 0.098 . PcyM_1344200 262 KNNDINK|AQ 0.070 . PcyM_1344200 266 INKAQSR|KK 0.118 . PcyM_1344200 267 NKAQSRK|KE 0.075 . PcyM_1344200 268 KAQSRKK|EK 0.085 . PcyM_1344200 270 QSRKKEK|LL 0.077 . PcyM_1344200 294 FNLLNGK|NK 0.058 . PcyM_1344200 296 LLNGKNK|EK 0.082 . PcyM_1344200 298 NGKNKEK|DD 0.066 . PcyM_1344200 306 DNNNSSK|KE 0.060 . PcyM_1344200 307 NNNSSKK|ER 0.094 . PcyM_1344200 309 NSSKKER|YR 0.173 . PcyM_1344200 311 SKKERYR|SS 0.122 . PcyM_1344200 316 YRSSNLK|KE 0.068 . PcyM_1344200 317 RSSNLKK|EK 0.136 . PcyM_1344200 319 SNLKKEK|KL 0.068 . PcyM_1344200 320 NLKKEKK|LK 0.087 . PcyM_1344200 322 KKEKKLK|MS 0.088 . PcyM_1344200 341 HDYMSLK|VN 0.065 . PcyM_1344200 345 SLKVNYK|IN 0.064 . PcyM_1344200 348 VNYKINK|KS 0.061 . PcyM_1344200 349 NYKINKK|SH 0.108 . PcyM_1344200 354 KKSHYDK|TK 0.077 . PcyM_1344200 356 SHYDKTK|KR 0.065 . PcyM_1344200 357 HYDKTKK|RP 0.086 . PcyM_1344200 358 YDKTKKR|PH 0.173 . PcyM_1344200 369 ISISENK|ER 0.056 . PcyM_1344200 371 ISENKER|NL 0.104 . PcyM_1344200 375 KERNLNK|SS 0.086 . PcyM_1344200 384 ICTDNAK|FL 0.066 . PcyM_1344200 394 FLNDNEK|NA 0.065 . PcyM_1344200 400 KNAHYYK|NR 0.065 . PcyM_1344200 402 AHYYKNR|KR 0.091 . PcyM_1344200 403 HYYKNRK|RY 0.072 . PcyM_1344200 404 YYKNRKR|YE 0.210 . PcyM_1344200 408 RKRYESR|RR 0.095 . PcyM_1344200 409 KRYESRR|RK 0.152 . PcyM_1344200 410 RYESRRR|KQ 0.097 . PcyM_1344200 411 YESRRRK|QK 0.290 . PcyM_1344200 413 SRRRKQK|KS 0.279 . PcyM_1344200 414 RRRKQKK|SS 0.360 . PcyM_1344200 418 QKKSSIK|IK 0.079 . PcyM_1344200 420 KSSIKIK|EK 0.090 . PcyM_1344200 422 SIKIKEK|NE 0.064 . PcyM_1344200 426 KEKNETK|ET 0.059 . PcyM_1344200 439 ILNVNEK|NK 0.070 . PcyM_1344200 441 NVNEKNK|YN 0.073 . PcyM_1344200 453 SSENVDK|VK 0.065 . PcyM_1344200 455 ENVDKVK|MS 0.076 . PcyM_1344200 459 KVKMSMK|HY 0.077 . PcyM_1344200 465 KHYPAGK|KT 0.077 . PcyM_1344200 466 HYPAGKK|TD 0.085 . PcyM_1344200 481 LQDAEQK|QQ 0.061 . PcyM_1344200 485 EQKQQMK|DE 0.073 . PcyM_1344200 489 QMKDEER|QK 0.080 . PcyM_1344200 491 KDEERQK|NY 0.059 . PcyM_1344200 501 STVEEEK|KI 0.062 . PcyM_1344200 502 TVEEEKK|II 0.099 . PcyM_1344200 505 EEKKIIK|EK 0.068 . PcyM_1344200 507 KKIIKEK|SK 0.104 . PcyM_1344200 509 IIKEKSK|IK 0.073 . PcyM_1344200 511 KEKSKIK|SS 0.089 . PcyM_1344200 518 SSMQCSR|RF 0.093 . PcyM_1344200 519 SMQCSRR|FF 0.220 . PcyM_1344200 525 RFFIFQK|KT 0.064 . PcyM_1344200 526 FFIFQKK|TL 0.083 . PcyM_1344200 529 FQKKTLR|KR 0.071 . PcyM_1344200 530 QKKTLRK|RK 0.094 . PcyM_1344200 531 KKTLRKR|KE 0.131 . PcyM_1344200 532 KTLRKRK|EK 0.246 . PcyM_1344200 534 LRKRKEK|II 0.173 . PcyM_1344200 557 FNDHFYK|TI 0.071 . PcyM_1344200 561 FYKTIHK|ND 0.055 . PcyM_1344200 571 ENLEEER|IY 0.082 . PcyM_1344200 578 IYIDNEK|EN 0.059 . PcyM_1344200 583 EKENTIK|KI 0.061 . PcyM_1344200 584 KENTIKK|II 0.153 . PcyM_1344200 588 IKKIIYR|IF 0.080 . PcyM_1344200 617 ILLISVK|SD 0.077 . PcyM_1344200 630 PSNDSLK|NF 0.077 . PcyM_1344200 642 FPHNIFK|KA 0.080 . PcyM_1344200 643 PHNIFKK|AE 0.127 . PcyM_1344200 648 KKAEFYR|LF 0.118 . PcyM_1344200 737 TNFNVDK|IS 0.064 . PcyM_1344200 755 LLLLFLK|FS 0.056 . PcyM_1344200 783 LIGIILK|RN 0.054 . PcyM_1344200 784 IGIILKR|NQ 0.122 . PcyM_1344200 788 LKRNQLK|YF 0.071 . PcyM_1344200 792 QLKYFLK|NN 0.060 . ____________________________^_________________

  • Fasta :-

    >PcyM_1344200 ATGGAAAACAACAAATCTGGAGAAAATGCAAAAGCTTTTCTGGAGTCAAAGGATAAGAGA GGGAAAATGGATGACGATGATGAGGACGATGATAAAAAAAAGAAACACGATAAGGACAAG CAAAACGGTAATCATAAAAGTAACGCTGGAGCTGCCCACAGGAAGAAAGATGGCAAGGAC AGTAATACCAAACGTATCGGTAACGACAACGATAGGGACCAGAAGAATGGCGGAGGCAAA AATAGTGATAAAAATGGCAACGCAAAAGTGGGTGGCACCGCGGATGATTCTAATCTCAAT AATGATTCTGCCCCTCCGATAGACTCCAACCCCCCGAAAACTCACAACGTTACGAAGAAG AAAGAGCGCAAAAGCAATAGCATTTCACTGAGCGATACCAGTGCGAGGCGCTCGAAAGAC AAGGGCGACAAGGCGCACCACAAACAGAAACAGGGGAGTGCGGAAAGTACGGAGAGGAGA AAAAGAGACGGAAAAAATGTGAAAGACGCAAAAGACGCAAAAGACGCAAAAGACGCAAAG GACGCAAAAAACGCCATGCACGTGAAGGATGCGGAAAAGGCGAAACACGAACACGGGGAG GAAGAAGAGGAAGAAGAGGAGGATGACGATGAAGACGACGAGGAGTACGATGATGAAGAA GACGATGATGATGATGAAGAAGAAGAAGATGATGACGATGATGAAGAGGACGATGAAGAT GAGGAAGATGATGATGACGAAGAAAATGAAGATGAAGAAAAAAGAAAAAATAATGACATT AATAAGGCCCAATCTAGAAAAAAAGAAAAGCTTCTACAAAATGAACTACTCAATCTAGAC AGCAGCAACACAGTCCAATTTTTCAATTTACTAAATGGTAAAAATAAAGAAAAAGATGAT AACAATAACAGTTCAAAGAAAGAAAGATATCGAAGTAGCAATTTAAAGAAGGAAAAAAAA TTAAAAATGAGTCATACGTATGAAGAGTTCCTATCGGATCATCATGATTATATGTCGTTA AAAGTAAATTATAAAATTAACAAAAAAAGTCATTACGATAAGACGAAAAAAAGACCACAC ATGTCCATATCCATAAGTGAAAATAAGGAACGTAATTTAAATAAGAGTAGCATCTGTACA GATAATGCAAAGTTTTTAAATTTCCTAAATGATAATGAAAAAAATGCCCATTATTATAAG AATCGAAAACGATACGAGAGTAGACGAAGAAAGCAAAAAAAATCTAGTATAAAAATAAAA GAAAAAAATGAAACCAAAGAAACGTTAGACAATTATATACTAAATGTGAATGAGAAGAAT AAGTATAATGAAATAATGTCCAGCGAAAATGTAGATAAAGTCAAAATGTCGATGAAGCAT TATCCTGCTGGCAAAAAAACGGATGAGGCGTACGTAAGCGAATTACAAGATGCTGAACAG AAGCAACAAATGAAGGACGAAGAACGTCAAAAGAATTACGCAAGTACAGTTGAAGAGGAA AAAAAAATTATAAAAGAAAAAAGCAAAATTAAATCTTCCATGCAGTGTAGTCGAAGATTT TTTATATTCCAAAAAAAAACGTTAAGAAAAAGAAAGGAAAAAATTATTATTTTTTTAAAT CATAATTATTCTGCGTGTGAAAATGGACAATTTAATGACCATTTTTACAAAACGATTCAT AAAAATGATTTGGAAAATTTAGAAGAAGAAAGAATTTACATTGACAATGAAAAGGAAAAT ACAATAAAAAAAATTATCTATAGAATATTTCCACAGTTTTCCATTTTCAGTTTAATCCTC TACGTTACTTTCATCCAATGGGTAATATTCATTCTGCTTATATCTGTCAAATCTGATTTT ACCTTAACCCCATCAAACGATTCGTTAAAAAATTTTGGAAGCAATTTCCCACACAATATT TTCAAGAAGGCCGAATTTTATCGCCTTTTCACAGCGCTATTTTTACATTCGAATTTTAAC CACATTTGTGCAAATACATATGTTCAGTTAACTGTCGGATTTTTGTTAGAATATATGTAT GGGACATATGTTGTTTTTTTAGTATACGTGTTTACGGGCATTTTTGGAATAATTTTATCC TCCCCCTTAACGTACTGCTACTCGACCACCGAAAGCAGTAGCAGCTCCTCAGGAATTATT GGAATTTTTTTTTCAGAAATTTTAATGATGACAAATTTTAATGTGGATAAAATTAGCATT AGTGTGCATTTATTTTGTTTCTTTCTCCTCCTCTTATTTCTTAAATTTTCTTTAAACACC GTCAGTATTAATATATACAGCCACTTTTTTGGTTTCCTGGGAGGCTTTTTAATCGGCATA ATTTTAAAGCGTAACCAACTGAAGTACTTTCTGAAAAATAATTTACTAATTCAAATATTG TCCCTGGTCTTCCTGATAGTAAGTTTAGCTACTGCTATTTTTATATCAACGTATGTCGTG CAGAGTTGTCCAAATTAA
  • Download Fasta

  • Fasta :-

    MENNKSGENAKAFLESKDKRGKMDDDDEDDDKKKKHDKDKQNGNHKSNAGAAHRKKDGKD SNTKRIGNDNDRDQKNGGGKNSDKNGNAKVGGTADDSNLNNDSAPPIDSNPPKTHNVTKK KERKSNSISLSDTSARRSKDKGDKAHHKQKQGSAESTERRKRDGKNVKDAKDAKDAKDAK DAKNAMHVKDAEKAKHEHGEEEEEEEEDDDEDDEEYDDEEDDDDDEEEEDDDDDEEDDED EEDDDDEENEDEEKRKNNDINKAQSRKKEKLLQNELLNLDSSNTVQFFNLLNGKNKEKDD NNNSSKKERYRSSNLKKEKKLKMSHTYEEFLSDHHDYMSLKVNYKINKKSHYDKTKKRPH MSISISENKERNLNKSSICTDNAKFLNFLNDNEKNAHYYKNRKRYESRRRKQKKSSIKIK EKNETKETLDNYILNVNEKNKYNEIMSSENVDKVKMSMKHYPAGKKTDEAYVSELQDAEQ KQQMKDEERQKNYASTVEEEKKIIKEKSKIKSSMQCSRRFFIFQKKTLRKRKEKIIIFLN HNYSACENGQFNDHFYKTIHKNDLENLEEERIYIDNEKENTIKKIIYRIFPQFSIFSLIL YVTFIQWVIFILLISVKSDFTLTPSNDSLKNFGSNFPHNIFKKAEFYRLFTALFLHSNFN HICANTYVQLTVGFLLEYMYGTYVVFLVYVFTGIFGIILSSPLTYCYSTTESSSSSSGII GIFFSEILMMTNFNVDKISISVHLFCFFLLLLFLKFSLNTVSINIYSHFFGFLGGFLIGI ILKRNQLKYFLKNNLLIQILSLVFLIVSLATAIFISTYVVQSCPN

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_1344200129 SSNSISLSDT0.995unspPcyM_1344200129 SSNSISLSDT0.995unspPcyM_1344200129 SSNSISLSDT0.995unspPcyM_1344200134 SLSDTSARRS0.995unspPcyM_1344200138 SSARRSKDKG0.997unspPcyM_1344200153 SQKQGSAEST0.997unspPcyM_1344200265 SNKAQSRKKE0.997unspPcyM_1344200305 SNNNSSKKER0.994unspPcyM_1344200350 SINKKSHYDK0.992unspPcyM_1344200376 SNLNKSSICT0.99unspPcyM_1344200407 SKRYESRRRK0.997unspPcyM_1344200416 SQKKSSIKIK0.993unspPcyM_1344200457 SKVKMSMKHY0.993unspPcyM_1344200628 SPSNDSLKNF0.991unspPcyM_13442006 SENNKSGENA0.992unspPcyM_1344200125 SKERKSNSIS0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India